Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C030447.2 Cucumis melo HOM05D003985 ORTHO05D005253 0.0e+00 1478.8 718 100.0
Sed0018239 Sechium edule HOM05D003985 ORTHO05D005253 0.0e+00 1136.7 679 83.5
ClCG05G017380 Citrullus lanatus HOM05D003985 ORTHO05D005253 0.0e+00 1134.0 678 84.4
QL12p024588 Quercus lobata HOM05D003985 ORTHO05D005253 7.4e-311 1070.1 678 78.2
CiPaw.08G017300 Carya illinoinensis HOM05D003985 ORTHO05D005253 2.1e-305 1052.0 678 76.3
Prupe.1G463300 Prunus persica HOM05D003985 ORTHO05D005253 3.4e-303 1044.6 679 75.0
FAN15G3026 Fragaria x ananassa HOM05D003985 ORTHO05D005253 7.5e-303 1043.5 678 74.9
MD08G1132700 Malus domestica HOM05D003985 ORTHO05D005253 3.7e-302 1041.2 678 74.3
FAN24G2613 Fragaria x ananassa HOM05D003985 ORTHO05D005253 1.2e-300 1036.2 678 74.3
CsaV3_3G046890 Cucumis sativus L. HOM05D003985 ORTHO05D005253 4.6e-300 1034.2 561 90.7
Nn7g37851 Nelumbo nucifera HOM05D003985 ORTHO05D005253 7.8e-300 1033.5 679 74.4
MD15G1112100 Malus domestica HOM05D003985 ORTHO05D005253 2.3e-299 1031.9 678 73.0
Glyma.04G074200 Glycine max HOM05D003985 ORTHO05D005253 1.5e-298 1029.2 678 75.7
Sed0018865 Sechium edule HOM05D003985 ORTHO05D005253 1.5e-298 1029.2 678 75.1
RcHm_v2.0_Chr6g0312391 Rosa chinensis HOM05D003985 ORTHO05D005253 3.3e-298 1028.1 678 74.0
Lj1g0007461 Lotus japonicus HOM05D003985 ORTHO05D005253 4.3e-298 1027.7 678 74.3
arahy.Tifrunner.gnm1.ann1.S977N0 Arachis hypogaea HOM05D003985 ORTHO05D005253 1.6e-297 1025.8 678 73.6
Atru.chr7.2713 Acer truncatum HOM05D003985 ORTHO05D005253 8.0e-297 1023.5 679 74.5
Glyma.06G075300 Glycine max HOM05D003985 ORTHO05D005253 1.8e-296 1022.3 678 74.6
arahy.Tifrunner.gnm1.ann1.66HY6B Arachis hypogaea HOM05D003985 ORTHO05D005253 3.1e-296 1021.5 678 73.3
Gohir.A07G001000 Gossypium hirsutum HOM05D003985 ORTHO05D005253 3.1e-296 1021.5 680 74.9
GSVIVG01035593001 Vitis vinifera HOM05D003985 ORTHO05D005253 5.2e-296 1020.8 683 74.1
Gorai.001G001100 Gossypium raimondii HOM05D003985 ORTHO05D005253 8.9e-296 1020.0 679 73.9
Sabra18G0005700 Salix brachista HOM05D003985 ORTHO05D005253 2.0e-295 1018.8 680 73.2
Thecc.09G001600 Theobroma cacao HOM05D003985 ORTHO05D005253 3.4e-295 1018.1 679 72.9
Potri.018G000500 Populus trichocarpa HOM05D003985 ORTHO05D005253 4.4e-295 1017.7 679 73.2
Gohir.D07G001400 Gossypium hirsutum HOM05D003985 ORTHO05D005253 2.2e-294 1015.4 679 73.8
Dinv37477 Davidia involucrata HOM05D003985 ORTHO05D005253 6.4e-294 1013.8 682 73.3
Phvul.009G099900 Phaseolus vulgaris HOM05D003985 ORTHO05D005253 6.4e-294 1013.8 678 74.2
TAR625G0977 Trochodendron aralioides HOM05D003985 ORTHO05D005253 3.2e-293 1011.5 684 72.7
Dinv09449 Davidia involucrata HOM05D003985 ORTHO05D005253 2.0e-292 1008.8 682 73.3
Aqoxy7G02572 Aquilegia oxysepala HOM05D003985 ORTHO05D005253 6.0e-292 1007.3 683 73.1
Lalb_Chr11g0064061 Lupinus albus HOM05D003985 ORTHO05D005253 1.3e-291 1006.1 678 72.4
Eucgr.D02618 Eucalyptus grandis HOM05D003985 ORTHO05D005253 1.5e-290 1002.7 680 72.5
TWI63G1282 Tripterygium wilfordii HOM05D003985 ORTHO05D005253 1.5e-290 1002.7 681 71.5
Actinidia14151 Actinidia chinensis HOM05D003985 ORTHO05D005253 3.3e-290 1001.5 682 72.7
TPR.G12431 Trifolium pratense HOM05D003985 ORTHO05D005253 4.3e-290 1001.1 678 72.4
THA.LOC104803893 Tarenaya hassleriana HOM05D003985 ORTHO05D005253 8.1e-289 996.9 679 71.0
PSO455G0188 Papaver somniferum HOM05D003985 ORTHO05D005253 4.0e-288 994.6 684 72.5
Ca_15682_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 6.8e-288 993.8 679 73.0
Medtr3g108640 Medicago truncatula HOM05D003985 ORTHO05D005253 1.5e-287 992.6 679 72.8
Hma1.2p1_0214F.1_g090700 Hydrangea macrophylla HOM05D003985 ORTHO05D005253 5.8e-287 990.7 682 71.3
BcaNung01543 Brassica carinata HOM05D003985 ORTHO05D005253 2.2e-286 988.8 679 71.1
FAN27G1558 Fragaria x ananassa HOM05D003985 ORTHO05D005253 2.2e-286 988.8 704 70.5
Ciclev10007631m.g Citrus clementina HOM05D003985 ORTHO05D005253 2.9e-286 988.4 726 69.7
PSO170G0668 Papaver somniferum HOM05D003985 ORTHO05D005253 4.9e-286 987.6 685 72.0
Thhalv10024653m.g Eutrema salsugineum HOM05D003985 ORTHO05D005253 5.4e-285 984.2 679 71.1
BcaNung03411 Brassica carinata HOM05D003985 ORTHO05D005253 9.2e-285 983.4 679 70.5
BcaB03g12676 Brassica carinata HOM05D003985 ORTHO05D005253 1.2e-284 983.0 681 70.9
Cfa013241 Carpinus fangiana HOM05D003985 ORTHO05D005253 1.6e-284 982.6 632 75.8
Psat0s2583g0040 Pisum sativum HOM05D003985 ORTHO05D005253 1.6e-284 982.6 682 71.7
Cc07_g19480 Coffea canephora HOM05D003985 ORTHO05D005253 2.1e-284 982.2 679 71.4
Sp7g29000 Schrenkiella parvula HOM05D003985 ORTHO05D005253 3.5e-284 981.5 679 70.4
Nitab4.5_0000860g0110 Nicotiana tabacum HOM05D003985 ORTHO05D005253 1.3e-283 979.5 689 70.5
CAN.G940.15 Capsicum annuum HOM05D003985 ORTHO05D005253 1.7e-283 979.2 687 71.0
HanXRQChr03g0082341 Helianthus annuus HOM05D003985 ORTHO05D005253 2.5e-282 975.3 691 70.0
BcaNung02721 Brassica carinata HOM05D003985 ORTHO05D005253 4.3e-282 974.5 679 70.1
FAN20G2665 Fragaria x ananassa HOM05D003985 ORTHO05D005253 5.6e-282 974.2 692 70.2
Sopen08g001940 Solanum pennellii HOM05D003985 ORTHO05D005253 1.2e-281 973.0 685 70.8
BraA03t15094Z Brassica rapa HOM05D003985 ORTHO05D005253 2.8e-281 971.8 679 70.0
Sc06g0000030 Simmondsia chinensis HOM05D003985 ORTHO05D005253 4.7e-281 971.1 684 70.5
Sc06g0001350 Simmondsia chinensis HOM05D003985 ORTHO05D005253 4.7e-281 971.1 684 70.5
Solyc08g005970.3 Solanum lycopersicum HOM05D003985 ORTHO05D005253 8.1e-281 970.3 685 70.5
Carub.0007s0941 Capsella rubella HOM05D003985 ORTHO05D005253 1.4e-280 969.5 679 70.1
BcaC01g01113 Brassica carinata HOM05D003985 ORTHO05D005253 3.1e-280 968.4 679 69.4
BolC3t21136H Brassica oleracea HOM05D003985 ORTHO05D005253 3.1e-280 968.4 679 69.4
MSTRG.13931 Avicennia marina HOM05D003985 ORTHO05D005253 4.0e-280 968.0 684 70.3
BraA08t33849Z Brassica rapa HOM05D003985 ORTHO05D005253 8.9e-280 966.8 681 69.8
C03p88280 Brassica napus HOM05D003985 ORTHO05D005253 1.5e-279 966.1 679 69.2
PGR044G2633 Punica granatum HOM05D003985 ORTHO05D005253 2.0e-279 965.7 708 67.7
CARHR239030 Cardamine hirsuta HOM05D003985 ORTHO05D005253 3.4e-279 964.9 679 69.2
AL7G20950 Arabidopsis lyrata HOM05D003985 ORTHO05D005253 4.4e-279 964.5 679 69.8
DCAR_001159 Daucus carota HOM05D003985 ORTHO05D005253 7.6e-279 963.8 682 69.8
Oeu002012.3 Olea europaea HOM05D003985 ORTHO05D005253 1.7e-278 962.6 734 65.1
Peaxi162Scf00045g01452 Petunia axillaris HOM05D003985 ORTHO05D005253 1.7e-278 962.6 686 70.1
SGA_v2.0_scaffold121G33039 Striga asiatica HOM05D003985 ORTHO05D005253 2.9e-278 961.8 697 68.3
AT4G31120 Arabidopsis thaliana HOM05D003985 ORTHO05D005253 1.9e-277 959.1 679 69.7
Haze_21675 Corylus avellana HOM05D003985 ORTHO05D005253 5.4e-277 957.6 679 70.4
ECA240G2540 Erigeron canadensis HOM05D003985 ORTHO05D005253 9.2e-277 956.8 683 69.4
Manes.12G085100 Manihot esculenta HOM05D003985 ORTHO05D005253 4.6e-276 954.5 616 77.1
A08p18880 Brassica napus HOM05D003985 ORTHO05D005253 2.3e-275 952.2 707 67.2
Migut.E01402 Erythranthe guttata HOM05D003985 ORTHO05D005253 2.3e-275 952.2 683 68.7
Lsat_1_v5_gn_5_59301 Lactuca sativa HOM05D003985 ORTHO05D005253 2.3e-275 952.2 682 69.4
ATR0626G195 Amborella trichopoda HOM05D003985 ORTHO05D005253 4.9e-270 934.5 689 68.1
CSS0024851 Camellia sinensis var. sinensis HOM05D003985 ORTHO05D005253 4.9e-270 934.5 647 72.6
Aa31LG2G19220 Aethionema arabicum HOM05D003985 ORTHO05D005253 2.4e-269 932.2 709 65.7
Lj8A420G13 Lonicera japonica HOM05D003985 ORTHO05D005253 5.4e-269 931.0 682 68.0
Lalb_Chr08g0243681 Lupinus albus HOM05D003985 ORTHO05D005253 1.6e-268 929.5 613 74.4
SalBow8G1365 Salvia bowleyana HOM05D003985 ORTHO05D005253 6.6e-267 924.1 708 66.2
AUR62020691 Chenopodium quinoa HOM05D003985 ORTHO05D005253 1.3e-265 919.8 679 68.6
Os02g0139200 Oryza sativa ssp. japonica HOM05D003985 ORTHO05D005253 2.4e-264 915.6 688 67.4
Potri.006G281000 Populus trichocarpa HOM05D003985 ORTHO05D005253 8.4e-262 907.1 690 66.7
AUR62028034 Chenopodium quinoa HOM05D003985 ORTHO05D005253 3.2e-261 905.2 728 63.7
Zm00001eb209210 Zea mays HOM05D003985 ORTHO05D005253 1.6e-260 902.9 688 65.6
Zm00001eb232020 Zea mays HOM05D003985 ORTHO05D005253 2.7e-260 902.1 688 65.3
SEGI_26514 Sequoiadendron giganteum HOM05D003985 ORTHO05D005253 4.6e-260 901.4 693 65.1
HPP92_026442 Vanilla planifolia HOM05D003985 ORTHO05D005253 2.3e-259 899.0 687 65.6
BolC7t46300H Brassica oleracea HOM05D003985 ORTHO05D005253 1.9e-258 896.0 702 65.5
AagrBONN_evm.TU.Sc2ySwM_228.4220 Anthoceros agrestis HOM05D003985 ORTHO05D005253 1.1e-250 870.2 694 62.4
unitig_0.g2194 Utricularia gibba HOM05D003985 ORTHO05D005253 1.6e-249 866.3 685 63.9
CiPaw.07G215500 Carya illinoinensis HOM05D003985 ORTHO05D005253 2.8e-249 865.5 577 73.8
Mapoly0116s0029 Marchantia polymorpha HOM05D003985 ORTHO05D005253 2.0e-247 859.4 698 62.0
MBI13_g33580_MAGBIO Magnolia biondii HOM05D003985 ORTHO05D005253 3.4e-247 858.6 663 65.9
CBR_g50848 Chara braunii HOM05D003985 ORTHO05D005253 7.6e-247 857.4 695 62.9
CDE06G1054 Ceratophyllum demersum HOM05D003985 ORTHO05D005253 6.5e-246 854.4 686 63.6
C07p58460 Brassica napus HOM05D003985 ORTHO05D005253 1.4e-245 853.2 594 70.5
EL10Ac2g03661 Beta vulgaris HOM05D003985 ORTHO05D005253 3.5e-244 848.6 724 61.2
A03p60550 Brassica napus HOM05D003985 ORTHO05D005253 1.0e-243 847.0 594 70.4
Hund03241 Selenicereus undatus HOM05D003985 ORTHO05D005253 1.1e-240 837.0 812 57.0
Pp3c1_39750 Physcomitrium patens HOM05D003985 ORTHO05D005253 1.3e-238 830.1 696 61.1
Pp3c17_13030 Physcomitrium patens HOM05D003985 ORTHO05D005253 6.5e-238 827.8 696 60.3
Lj8C416G1 Lonicera japonica HOM05D003985 ORTHO05D005253 1.0e-235 820.5 642 66.4
vmacro05088 Vaccinium macrocarpon HOM05D003985 ORTHO05D005253 7.4e-234 814.3 887 51.5
Sp4g03340 Schrenkiella parvula HOM05D003985 ORTHO05D005253 4.1e-232 808.5 679 59.6
SMO334G0088 Selaginella moellendorffii HOM05D003985 ORTHO05D005253 1.0e-230 803.9 693 59.6
FvH4_2g30610 Fragaria vesca HOM05D003985 ORTHO05D005253 3.2e-229 798.9 521 73.3
Carub.0004s0367 Capsella rubella HOM05D003985 ORTHO05D005253 1.2e-220 770.4 670 58.8
Hma1.2p1_0268F.1_g107610 Hydrangea macrophylla HOM05D003985 ORTHO05D005253 1.4e-211 740.3 505 71.3
Pp3c17_13031 Physcomitrium patens HOM05D003985 ORTHO05D005253 1.0e-206 724.2 696 54.7
Rhsim07G0173800 Rhododendron simsii HOM05D003985 ORTHO05D005253 1.5e-205 720.3 511 69.7
TPR.G30956 Trifolium pratense HOM05D003985 ORTHO05D005253 4.9e-185 652.1 685 51.2
Aa31sc593G10 Aethionema arabicum HOM05D003985 ORTHO05D005253 1.2e-175 620.9 520 62.1
CARHR117750 Cardamine hirsuta HOM05D003985 ORTHO05D005253 2.1e-172 610.1 681 51.1
Ca_12891_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 2.6e-170 603.2 686 49.4
MD15G1112600 Malus domestica HOM05D003985 ORTHO05D005253 2.3e-166 590.1 448 66.3
Aa31LG7G12410 Aethionema arabicum HOM05D003985 ORTHO05D005253 3.9e-166 589.3 662 48.0
Thhalv10000136m.g Eutrema salsugineum HOM05D003985 ORTHO05D005253 9.5e-165 584.7 532 56.0
Cre03.g176550 Chlamydomonas reinhardtii HOM05D003985 ORTHO05D005253 6.2e-164 582.0 736 44.0
MCO04G116 Micromonas commoda HOM05D003985 ORTHO05D005253 3.1e-163 579.7 694 47.0
VMungo1309G1102 Vigna mungo HOM05D003985 ORTHO05D005253 8.4e-153 545.0 335 79.7
PRCOL_00000397 Prasinoderma coloniale HOM05D003985 ORTHO05D005253 2.9e-145 520.0 709 43.7
Thhalv10000691m.g Eutrema salsugineum HOM05D003985 ORTHO05D005253 3.8e-137 493.0 689 44.6
C01p07840 Brassica napus HOM05D003985 ORTHO05D005253 2.4e-136 490.3 335 71.9
BolC1t00771H Brassica oleracea HOM05D003985 ORTHO05D005253 9.3e-136 488.4 329 72.0
Nitab4.5_0003763g0040 Nicotiana tabacum HOM05D003985 ORTHO05D005253 2.7e-135 486.9 391 63.9
Nitab4.5_0020175g0010 Nicotiana tabacum HOM05D003985 ORTHO05D005253 1.9e-125 454.1 283 76.7
VMungo1309G0405 Vigna mungo HOM05D003985 ORTHO05D005253 1.2e-122 444.9 285 75.8
Ca_12890_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 1.8e-118 431.0 683 40.4
CARHR117740 Cardamine hirsuta HOM05D003985 ORTHO05D005253 9.7e-117 425.2 331 66.2
SHI03164 Sapria himalayana HOM05D003985 ORTHO05D005253 1.3e-105 388.3 390 55.1
Cpa.g.sc52.83 Carica papaya HOM05D003985 ORTHO05D005253 1.2e-103 381.7 679 37.0
MD15G1112700 Malus domestica HOM05D003985 ORTHO05D005253 2.1e-103 380.9 239 75.3
BcaC09g51896 Brassica carinata HOM05D003985 ORTHO05D005253 4.8e-100 369.8 316 62.7
Haze_26428 Corylus avellana HOM05D003985 ORTHO05D005253 2.7e-74 284.3 521 35.9
TPR.G30955 Trifolium pratense HOM05D003985 ORTHO05D005253 3.5e-74 283.9 452 38.1
SHI03163 Sapria himalayana HOM05D003985 ORTHO05D005253 1.1e-72 278.9 235 58.7
Haze_26909 Corylus avellana HOM05D003985 ORTHO05D005253 7.3e-72 276.2 540 34.3
MD15G1111800 Malus domestica HOM05D003985 ORTHO05D005253 3.0e-70 270.8 188 69.7
Haze_26350 Corylus avellana HOM05D003985 ORTHO05D005253 3.0e-65 254.2 705 28.5
COL.COLO4_18638 Corchorus olitorius HOM05D003985 ORTHO05D005253 8.0e-63 246.1 583 34.1
Ca_12894_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 2.3e-62 244.6 190 63.2
MBI13_g46508_MAGBIO Magnolia biondii HOM05D003985 ORTHO05D005253 1.3e-60 238.8 240 52.5
Ca_12896_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 7.0e-59 233.0 272 47.4
HanXRQChr08g0231401 Helianthus annuus HOM05D003985 ORTHO05D005253 3.5e-42 177.6 139 69.8
Ca_02459_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 2.6e-37 161.4 145 62.8
Rhsim07G0173700 Rhododendron simsii HOM05D003985 ORTHO05D023785 7.8e-34 149.8 231 41.6
TPR.G30953 Trifolium pratense HOM05D003985 ORTHO05D005253 1.6e-31 142.1 108 65.7
Oeu057141.1 Olea europaea HOM05D003985 ORTHO05D005253 9.0e-30 136.3 119 59.7
TPR.G30960 Trifolium pratense HOM05D003985 ORTHO05D005253 1.7e-28 132.1 126 54.8
arahy.Tifrunner.gnm1.ann1.AXX9EX Arachis hypogaea HOM05D003985 ORTHO05D023785 1.4e-27 129.0 79 70.9
TPR.G36216 Trifolium pratense HOM05D003985 ORTHO05D005253 3.1e-22 111.3 134 47.0
Lalb_Chr08g0243671 Lupinus albus HOM05D003985 ORTHO05D044681 7.1e-19 100.1 50 80.0
BcaC09g51897 Brassica carinata HOM05D003985 ORTHO05D023785 9.3e-19 99.8 92 55.4
TPR.G39898 Trifolium pratense HOM05D003985 ORTHO05D044347 8.7e-17 93.2 65 63.1
Ca_27914_v3 Cicer arietinum L. HOM05D003985 ORTHO05D044347 1.9e-16 92.0 65 72.3
Zm00001eb086470 Zea mays HOM05D000879 ORTHO05D002043 7.4e-16 90.1 163 35.6
Cc01_g20960 Coffea canephora HOM05D003985 ORTHO05D044681 1.4e-14 85.9 50 66.0
TPR.G20415 Trifolium pratense HOM05D003985 ORTHO05D038560 1.8e-14 85.5 79 57.0
TPR.G29968 Trifolium pratense HOM05D001758 ORTHO05D005969 4.0e-14 84.3 54 75.9
Ca_12155_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 6.9e-14 83.6 50 78.0
TPR.G33018 Trifolium pratense HOM05D000456 ORTHO05D000887 4.9e-12 77.4 63 63.5
TAR636G2548 Trochodendron aralioides HOM05D003985 ORTHO05D031326 1.2e-10 72.8 57 68.4
BcaB02g10473 Brassica carinata HOM05D012099 ORTHO05D014504 2.1e-10 72.0 81 48.1
BolC1t00770H Brassica oleracea HOM05D003985 ORTHO05D023785 2.7e-10 71.6 74 48.6
QL03p050850 Quercus lobata HOM05D000143 ORTHO05D000072 4.6e-10 70.9 47 72.3
CSS0001762 Camellia sinensis var. sinensis HOM05D003985 ORTHO05D023785 1.3e-09 69.3 51 66.7
AL4G14710 Arabidopsis lyrata HOM05D003985 ORTHO05D038560 2.3e-09 68.6 93 44.1
AL7G31410 Arabidopsis lyrata HOM05D003985 ORTHO05D031326 3.0e-09 68.2 37 83.8
AL6G47194 Arabidopsis lyrata HOM05D003985 ORTHO05D031326 6.7e-09 67.0 45 71.1
SMO118G0255 Selaginella moellendorffii HOM05D000639 ORTHO05D006731 2.5e-08 65.1 255 27.1
VMungo1215G0799 Vigna mungo HOM05D000639 ORTHO05D006731 4.1e-06 57.8 258 24.0
Glyma.09G285500 Glycine max HOM05D000639 ORTHO05D006731 5.3e-06 57.4 246 24.0
Haze_17408 Corylus avellana HOM05D003084 ORTHO05D003580 9.0e-06 56.6 184 26.1
Phvul.003G001000 Phaseolus vulgaris HOM05D000639 ORTHO05D006731 9.0e-06 56.6 247 24.7
Prupe.1G350300 Prunus persica HOM05D000639 ORTHO05D006731 9.0e-06 56.6 255 24.7


User provided reference genes

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