Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C029751.2 Cucumis melo HOM05D003829 ORTHO05D044979 1.4e-41 172.6 87 100.0
MELO3C017266.2 Cucumis melo HOM05D003829 ORTHO05D004943 5.1e-28 127.5 90 78.9
ClCG06G015260 Citrullus lanatus HOM05D003829 ORTHO05D004943 9.5e-27 123.2 60 98.3
CsaV3_1G003150 Cucumis sativus L. HOM05D003829 ORTHO05D004943 9.5e-27 123.2 60 98.3
Sed0025371 Sechium edule HOM05D003829 ORTHO05D004943 3.1e-25 118.2 87 71.3
Sc12g0007010 Simmondsia chinensis HOM05D003829 ORTHO05D004943 7.5e-24 113.6 87 70.1
Lj4C813G7 Lonicera japonica HOM05D003829 ORTHO05D004943 2.2e-23 112.1 60 83.3
Rhsim01G0138800 Rhododendron simsii HOM05D003829 ORTHO05D004943 2.9e-23 111.7 60 83.3
Rhsim09G0091000 Rhododendron simsii HOM05D003829 ORTHO05D004943 2.9e-23 111.7 60 83.3
Actinidia35063 Actinidia chinensis HOM05D003829 ORTHO05D004943 3.7e-23 111.3 87 63.2
CSS0022273 Camellia sinensis var. sinensis HOM05D003829 ORTHO05D004943 3.7e-23 111.3 87 66.7
CANSAT80G2907 Cannabis sativa HOM05D003829 ORTHO05D004943 3.7e-23 111.3 60 85.0
Dinv38617 Davidia involucrata HOM05D003829 ORTHO05D004943 3.7e-23 111.3 87 66.7
Duzib084G0834 Durio zibethinus HOM05D003829 ORTHO05D004943 3.7e-23 111.3 87 69.0
Nn6g34733 Nelumbo nucifera HOM05D003829 ORTHO05D004943 3.7e-23 111.3 60 81.7
Actinidia18960 Actinidia chinensis HOM05D003829 ORTHO05D004943 4.9e-23 110.9 87 66.7
Prupe.5G212200 Prunus persica HOM05D003829 ORTHO05D004943 8.3e-23 110.2 60 83.3
Phvul.003G180700 Phaseolus vulgaris HOM05D003829 ORTHO05D004943 1.1e-22 109.8 87 65.5
Prupe.5G041000 Prunus persica HOM05D003829 ORTHO05D004943 1.1e-22 109.8 60 81.7
Nn3g17616 Nelumbo nucifera HOM05D003829 ORTHO05D004943 1.4e-22 109.4 87 62.1
Thecc.03G060100 Theobroma cacao HOM05D003829 ORTHO05D004943 1.4e-22 109.4 87 66.7
Potri.018G070200 Populus trichocarpa HOM05D003829 ORTHO05D004943 1.9e-22 109.0 87 65.5
Gohir.A12G270300 Gossypium hirsutum HOM05D003829 ORTHO05D004943 2.4e-22 108.6 87 66.7
Gohir.D12G270700 Gossypium hirsutum HOM05D003829 ORTHO05D004943 2.4e-22 108.6 87 66.7
Gorai.008G291100 Gossypium raimondii HOM05D003829 ORTHO05D004943 2.4e-22 108.6 87 66.7
Hund27361 Selenicereus undatus HOM05D003829 ORTHO05D004943 2.4e-22 108.6 87 64.4
TAR622G1091 Trochodendron aralioides HOM05D003829 ORTHO05D004943 3.2e-22 108.2 87 62.1
VMungo1215G2863 Vigna mungo HOM05D003829 ORTHO05D004943 3.2e-22 108.2 87 64.4
MSTRG.22458 Avicennia marina HOM05D003829 ORTHO05D004943 4.1e-22 107.8 60 83.3
Ca_21737_v3 Cicer arietinum L. HOM05D003829 ORTHO05D004943 5.4e-22 107.5 87 62.1
Potri.013G068100 Populus trichocarpa HOM05D003829 ORTHO05D004943 5.4e-22 107.5 87 64.4
PGR119G2172 Punica granatum HOM05D003829 ORTHO05D004943 5.4e-22 107.5 87 66.7
Lj4g0017423 Lotus japonicus HOM05D003829 ORTHO05D004943 7.1e-22 107.1 87 62.1
Glyma.17G083700 Glycine max HOM05D003829 ORTHO05D004943 9.2e-22 106.7 87 62.1
GSVIVG01008188001 Vitis vinifera HOM05D003829 ORTHO05D004943 9.2e-22 106.7 87 64.4
Ah.03g138770 Amaranthus hybridus HOM05D003829 ORTHO05D004943 1.2e-21 106.3 60 80.0
Cc00_g04570 Coffea canephora HOM05D003829 ORTHO05D004943 1.2e-21 106.3 87 66.7
Glyma.05G016400 Glycine max HOM05D003829 ORTHO05D004943 1.2e-21 106.3 87 62.1
Medtr4g112680 Medicago truncatula HOM05D003829 ORTHO05D004943 1.2e-21 106.3 86 61.6
Medtr5g077610 Medicago truncatula HOM05D003829 ORTHO05D004943 1.2e-21 106.3 86 61.6
arahy.Tifrunner.gnm1.ann1.03AHKF Arachis hypogaea HOM05D003829 ORTHO05D004943 1.6e-21 105.9 87 63.2
arahy.Tifrunner.gnm1.ann1.WM1R7K Arachis hypogaea HOM05D003829 ORTHO05D004943 1.6e-21 105.9 87 63.2
RcHm_v2.0_Chr7g0184111 Rosa chinensis HOM05D003829 ORTHO05D004943 1.6e-21 105.9 60 76.7
vmacro21052 Vaccinium macrocarpon HOM05D003829 ORTHO05D004943 1.6e-21 105.9 60 80.0
DCAR_011621 Daucus carota HOM05D003829 ORTHO05D004943 2.7e-21 105.1 60 80.0
HanXRQChr03g0078721 Helianthus annuus HOM05D003829 ORTHO05D004943 4.6e-21 104.4 60 80.0
Hma1.2p1_0744F.1_g211650 Hydrangea macrophylla HOM05D003829 ORTHO05D004943 4.6e-21 104.4 60 80.0
Manes.06G055300 Manihot esculenta HOM05D003829 ORTHO05D004943 4.6e-21 104.4 87 63.2
TPR.G23867 Trifolium pratense HOM05D003829 ORTHO05D004943 4.6e-21 104.4 60 75.0
ATR0789G018 Amborella trichopoda HOM05D003829 ORTHO05D004943 6.0e-21 104.0 87 65.5
Lalb_Chr12g0197451 Lupinus albus HOM05D003829 ORTHO05D004943 6.0e-21 104.0 87 59.8
EL10Ac6g14132 Beta vulgaris HOM05D003829 ORTHO05D004943 7.8e-21 103.6 60 76.7
CDE10G0520 Ceratophyllum demersum HOM05D003829 ORTHO05D004943 7.8e-21 103.6 87 62.1
CDE10G0816 Ceratophyllum demersum HOM05D003829 ORTHO05D004943 7.8e-21 103.6 87 63.2
FvH4_5g13020 Fragaria vesca HOM05D003829 ORTHO05D004943 7.8e-21 103.6 60 75.0
FAN08G2534 Fragaria x ananassa HOM05D003829 ORTHO05D004943 7.8e-21 103.6 60 75.0
FAN13G0156 Fragaria x ananassa HOM05D003829 ORTHO05D004943 7.8e-21 103.6 60 75.0
FAN18G1085 Fragaria x ananassa HOM05D003829 ORTHO05D004943 7.8e-21 103.6 60 75.0
Psat4g043920 Pisum sativum HOM05D003829 ORTHO05D004943 1.0e-20 103.2 86 59.3
ECA240G3266 Erigeron canadensis HOM05D003829 ORTHO05D003544 1.3e-20 102.8 60 78.3
HanXRQChr09g0270121 Helianthus annuus HOM05D003829 ORTHO05D004943 1.3e-20 102.8 59 81.4
AUR62008644 Chenopodium quinoa HOM05D003829 ORTHO05D004943 3.9e-20 101.3 60 75.0
AUR62014243 Chenopodium quinoa HOM05D003829 ORTHO05D004943 3.9e-20 101.3 60 75.0
Eucgr.B02012 Eucalyptus grandis HOM05D003829 ORTHO05D004943 3.9e-20 101.3 87 63.2
SGA_v2.0_scaffold127G34045 Striga asiatica HOM05D003829 ORTHO05D004943 3.9e-20 101.3 60 78.3
SGA_v2.0_scaffold116G32207 Striga asiatica HOM05D003829 ORTHO05D004943 5.1e-20 100.9 60 78.3
THA.LOC104806554 Tarenaya hassleriana HOM05D003829 ORTHO05D004943 1.1e-19 99.8 60 80.0
THA.LOC104820955 Tarenaya hassleriana HOM05D003829 ORTHO05D004943 1.1e-19 99.8 60 80.0
Migut.L00155 Erythranthe guttata HOM05D003829 ORTHO05D004943 1.9e-19 99.0 60 75.0
Migut.M00517 Erythranthe guttata HOM05D003829 ORTHO05D004943 1.9e-19 99.0 60 75.0
Migut.N03353 Erythranthe guttata HOM05D003829 ORTHO05D004943 1.9e-19 99.0 60 75.0
Migut.O00831 Erythranthe guttata HOM05D003829 ORTHO05D004943 1.9e-19 99.0 60 75.0
Atru.chr11.247 Acer truncatum HOM05D003829 ORTHO05D004943 3.3e-19 98.2 59 78.0
Cpa.g.sc271.5 Carica papaya HOM05D003829 ORTHO05D004943 3.3e-19 98.2 60 80.0
MD14G1218400 Malus domestica HOM05D003829 ORTHO05D004943 3.3e-19 98.2 60 76.7
HanXRQChr05g0129701 Helianthus annuus HOM05D003829 ORTHO05D044979 4.3e-19 97.8 87 60.9
Ciclev10014690m.g Citrus clementina HOM05D003829 ORTHO05D004943 7.3e-19 97.1 85 63.5
MD06G1208000 Malus domestica HOM05D003829 ORTHO05D004943 7.3e-19 97.1 60 75.0
Atru.chr10.875 Acer truncatum HOM05D003829 ORTHO05D004943 1.2e-18 96.3 86 59.3
SalBow6G2606 Salvia bowleyana HOM05D003829 ORTHO05D004943 2.1e-18 95.5 55 81.8
Sp6g28120 Schrenkiella parvula HOM05D003829 ORTHO05D004943 2.8e-18 95.1 60 73.3
QL10p021913 Quercus lobata HOM05D003829 ORTHO05D004943 4.7e-18 94.4 60 71.7
unitig_60.g25860 Utricularia gibba HOM05D003829 ORTHO05D004943 1.1e-17 93.2 59 74.6
unitig_0.g846 Utricularia gibba HOM05D003829 ORTHO05D004943 1.4e-17 92.8 59 74.6
BcaC04g18917 Brassica carinata HOM05D003829 ORTHO05D004943 1.8e-17 92.4 60 71.7
COL.COLO4_28877 Corchorus olitorius HOM05D003829 ORTHO05D004943 3.1e-17 91.7 51 78.4
Sabra13G0059400 Salix brachista HOM05D003829 ORTHO05D004943 3.1e-17 91.7 125 46.4
Aa31LG11G13610 Aethionema arabicum HOM05D003829 ORTHO05D004943 6.8e-17 90.5 59 71.2
Haze_18554 Corylus avellana HOM05D003829 ORTHO05D004943 6.8e-17 90.5 60 71.7
TWI73G0611 Tripterygium wilfordii HOM05D003829 ORTHO05D004943 6.8e-17 90.5 58 74.1
Aqoxy1G02793 Aquilegia oxysepala HOM05D003829 ORTHO05D004943 1.2e-16 89.7 58 74.1
AL2G32240 Arabidopsis lyrata HOM05D003829 ORTHO05D004943 1.2e-16 89.7 60 68.3
Oeu037756.2 Olea europaea HOM05D003829 ORTHO05D004943 1.2e-16 89.7 60 63.3
Peaxi162Scf00153g00217 Petunia axillaris HOM05D003829 ORTHO05D004943 1.2e-16 89.7 86 58.1
Solyc01g008310.4 Solanum lycopersicum HOM05D003829 ORTHO05D004943 1.2e-16 89.7 88 56.8
Sopen01g003830 Solanum pennellii HOM05D003829 ORTHO05D004943 1.2e-16 89.7 88 56.8
Cfa021591 Carpinus fangiana HOM05D003829 ORTHO05D004943 1.5e-16 89.4 60 71.7
Pp3c19_13120 Physcomitrium patens HOM05D003829 ORTHO05D004943 1.5e-16 89.4 87 50.6
CBR_g49053 Chara braunii HOM05D003829 ORTHO05D004943 2.0e-16 89.0 87 52.9
Lsat_1_v5_gn_1_11920 Lactuca sativa HOM05D003829 ORTHO05D004943 2.0e-16 89.0 51 78.4
Mapoly0013s0023 Marchantia polymorpha HOM05D003829 ORTHO05D004943 2.0e-16 89.0 67 58.2
Carub.0002s1941 Capsella rubella HOM05D003829 ORTHO05D004943 3.4e-16 88.2 60 66.7
CiPaw.04G139300 Carya illinoinensis HOM05D003829 ORTHO05D004943 4.4e-16 87.8 57 73.7
CiPaw.15G121900 Carya illinoinensis HOM05D003829 ORTHO05D004943 4.4e-16 87.8 60 66.7
Nitab4.5_0000069g0100 Nicotiana tabacum HOM05D003829 ORTHO05D004943 4.4e-16 87.8 86 58.1
Nitab4.5_0001328g0030 Nicotiana tabacum HOM05D003829 ORTHO05D004943 4.4e-16 87.8 86 58.1
Nitab4.5_0006274g0010 Nicotiana tabacum HOM05D003829 ORTHO05D004943 4.4e-16 87.8 86 58.1
Haze_25314 Corylus avellana HOM05D003829 ORTHO05D004943 5.8e-16 87.4 60 68.3
BcaB08g36877 Brassica carinata HOM05D003829 ORTHO05D004943 7.6e-16 87.0 60 68.3
C09p61050 Brassica napus HOM05D003829 ORTHO05D004943 7.6e-16 87.0 60 68.3
BolC9t58950H Brassica oleracea HOM05D003829 ORTHO05D004943 7.6e-16 87.0 60 68.3
Pp3c22_15340 Physcomitrium patens HOM05D003829 ORTHO05D004943 7.6e-16 87.0 87 49.4
Aqoxy6G02137 Aquilegia oxysepala HOM05D003829 ORTHO05D004943 1.7e-15 85.9 59 69.5
AT1G72550 Arabidopsis thaliana HOM05D003829 ORTHO05D004943 1.7e-15 85.9 60 66.7
A10p23060 Brassica napus HOM05D003829 ORTHO05D004943 2.2e-15 85.5 60 66.7
BraA10t44375Z Brassica rapa HOM05D003829 ORTHO05D004943 2.2e-15 85.5 60 66.7
SMO351G0192 Selaginella moellendorffii HOM05D003829 ORTHO05D004943 2.2e-15 85.5 64 57.8
Thhalv10007156m.g Eutrema salsugineum HOM05D003829 ORTHO05D004943 8.4e-15 83.6 59 66.1
PSO339G3234 Papaver somniferum HOM05D003829 ORTHO05D004943 1.1e-14 83.2 60 66.7
PSO676G0009 Papaver somniferum HOM05D003829 ORTHO05D004943 1.1e-14 83.2 60 66.7
CAN.G282.43 Capsicum annuum HOM05D003829 ORTHO05D004943 1.4e-14 82.8 59 66.1
HPP92_013143 Vanilla planifolia HOM05D003829 ORTHO05D004943 1.4e-14 82.8 60 65.0
HPP92_013145 Vanilla planifolia HOM05D003829 ORTHO05D004943 1.4e-14 82.8 60 65.0
SEGI_10599 Sequoiadendron giganteum HOM05D003829 ORTHO05D004943 1.9e-14 82.4 51 64.7
CARHR065490 Cardamine hirsuta HOM05D003829 ORTHO05D004943 2.4e-14 82.0 60 61.7
PSO384G2719 Papaver somniferum HOM05D003829 ORTHO05D004943 3.2e-14 81.6 60 65.0
Os05g0558900 Oryza sativa ssp. japonica HOM05D003829 ORTHO05D004943 9.2e-14 80.1 60 63.3
Hma1.2p1_0340F.1_g130210 Hydrangea macrophylla HOM05D003829 ORTHO05D004943 2.1e-13 79.0 42 85.7
PRCOL_00001438 Prasinoderma coloniale HOM05D003829 ORTHO05D004943 4.6e-13 77.8 60 58.3
AagrBONN_evm.TU.Sc2ySwM_199.43 Anthoceros agrestis HOM05D003829 ORTHO05D004943 1.0e-12 76.6 60 51.7
BcaC03g18463 Brassica carinata HOM05D003829 ORTHO05D004943 1.3e-12 76.3 51 66.7
C02p08100 Brassica napus HOM05D003829 ORTHO05D004943 2.3e-12 75.5 50 68.0
BolC2t06732H Brassica oleracea HOM05D003829 ORTHO05D004943 2.3e-12 75.5 50 68.0
HPP92_013183 Vanilla planifolia HOM05D003829 ORTHO05D004943 3.0e-12 75.1 60 65.0
Cfa026018 Carpinus fangiana HOM05D003829 ORTHO05D004943 5.6e-11 70.9 58 51.7
MCO09G827 Micromonas commoda HOM05D003829 ORTHO05D004943 1.6e-10 69.3 87 46.0
Cre13.g603900 Chlamydomonas reinhardtii HOM05D003829 ORTHO05D004943 1.1e-09 66.6 87 41.4
Haze_26625 Corylus avellana HOM05D003829 ORTHO05D004943 1.5e-08 62.8 59 47.5
SEGI_27435 Sequoiadendron giganteum HOM05D003829 ORTHO05D004943 2.6e-08 62.0 60 58.3
AagrBONN_evm.TU.Sc2ySwM_368.2791 Anthoceros agrestis HOM05D003829 ORTHO05D004943 2.2e-07 58.9 51 51.0
HPP92_013146 Vanilla planifolia HOM05D003829 ORTHO05D004943 2.9e-07 58.5 67 46.3


User provided reference genes

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