Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C029570.2 Cucumis melo HOM05D018665 ORTHO05D022380 7.0e-84 313.9 161 100.0
MELO3C033894.2 Cucumis melo HOM05D001469 ORTHO05D001648 4.8e-32 141.7 126 66.7
MELO3C027671.2 Cucumis melo HOM05D018665 ORTHO05D022380 2.9e-29 132.5 69 97.1
MELO3C031210.2 Cucumis melo HOM05D018665 ORTHO05D022380 3.2e-28 129.0 77 89.6
MELO3C005926.2 Cucumis melo HOM05D001469 ORTHO05D001648 2.3e-26 122.9 138 51.4
CsaV3_3G007070 Cucumis sativus L. HOM05D001469 ORTHO05D001648 1.5e-25 120.2 137 52.6
ClCG05G000010 Citrullus lanatus HOM05D001469 ORTHO05D001648 4.2e-20 102.1 153 44.4
MELO3C034757.2 Cucumis melo HOM05D018665 ORTHO05D168860 3.7e-16 89.0 47 93.6
Cc04_g05870 Coffea canephora HOM05D001469 ORTHO05D001648 9.1e-15 84.3 126 44.4
Sed0017905 Sechium edule HOM05D001469 ORTHO05D001648 9.1e-15 84.3 141 39.0
DCAR_021395 Daucus carota HOM05D001469 ORTHO05D001648 1.7e-13 80.1 68 61.8
TAR371G1267 Trochodendron aralioides HOM05D001469 ORTHO05D001648 5.0e-13 78.6 68 61.8
VMungo0251G3692 Vigna mungo HOM05D001469 ORTHO05D001648 6.5e-13 78.2 109 46.8
Lj4g0000743 Lotus japonicus HOM05D001469 ORTHO05D001648 8.5e-13 77.8 68 63.2
Dinv13721 Davidia involucrata HOM05D001469 ORTHO05D001648 1.1e-12 77.4 67 61.2
Glyma.08G007500 Glycine max HOM05D001469 ORTHO05D001648 1.4e-12 77.0 84 52.4
Medtr8g096190 Medicago truncatula HOM05D001469 ORTHO05D001648 1.9e-12 76.6 68 60.3
Actinidia36842 Actinidia chinensis HOM05D001469 ORTHO05D001648 3.2e-12 75.9 68 58.8
MSTRG.4645 Avicennia marina HOM05D001469 ORTHO05D001648 3.2e-12 75.9 67 58.2
CANSAT56G1992 Cannabis sativa HOM05D001469 ORTHO05D001648 3.2e-12 75.9 68 57.4
Duzib084G0588 Durio zibethinus HOM05D001469 ORTHO05D001648 3.2e-12 75.9 106 41.5
Solyc03g118200.4 Solanum lycopersicum HOM05D001469 ORTHO05D001648 3.2e-12 75.9 98 45.9
Sopen03g037120 Solanum pennellii HOM05D001469 ORTHO05D001648 3.2e-12 75.9 98 45.9
GSVIVG01008648001 Vitis vinifera HOM05D001469 ORTHO05D001648 3.2e-12 75.9 104 47.1
arahy.Tifrunner.gnm1.ann1.MG7Y4R Arachis hypogaea HOM05D001469 ORTHO05D001648 4.2e-12 75.5 68 60.3
vmacro16755 Vaccinium macrocarpon HOM05D001469 ORTHO05D001648 4.2e-12 75.5 69 58.0
arahy.Tifrunner.gnm1.ann1.IJ6373 Arachis hypogaea HOM05D001469 ORTHO05D001648 5.5e-12 75.1 109 44.0
CiPaw.11G000900 Carya illinoinensis HOM05D001469 ORTHO05D001648 5.5e-12 75.1 68 58.8
COL.COLO4_37257 Corchorus olitorius HOM05D001469 ORTHO05D001648 5.5e-12 75.1 68 58.8
TPR.G12756 Trifolium pratense HOM05D001469 ORTHO05D001648 5.5e-12 75.1 65 60.0
arahy.Tifrunner.gnm1.ann1.UI8HZR Arachis hypogaea HOM05D001469 ORTHO05D001648 7.2e-12 74.7 99 47.5
HanXRQChr05g0155391 Helianthus annuus HOM05D001469 ORTHO05D001648 7.2e-12 74.7 66 59.1
Lalb_Chr07g0183821 Lupinus albus HOM05D001469 ORTHO05D001648 7.2e-12 74.7 68 58.8
TAR629G0068 Trochodendron aralioides HOM05D001469 ORTHO05D001648 7.2e-12 74.7 68 60.3
MD06G1130500 Malus domestica HOM05D001469 ORTHO05D001648 9.4e-12 74.3 68 55.9
QL10p000483 Quercus lobata HOM05D001469 ORTHO05D001648 9.4e-12 74.3 65 55.4
Peaxi162Scf00314g00627 Petunia axillaris HOM05D001469 ORTHO05D001648 1.2e-11 73.9 98 46.9
arahy.Tifrunner.gnm1.ann1.88B2ED Arachis hypogaea HOM05D001469 ORTHO05D001648 1.6e-11 73.6 109 44.0
CARHR275660 Cardamine hirsuta HOM05D001469 ORTHO05D001648 1.6e-11 73.6 107 42.1
Migut.D01183 Erythranthe guttata HOM05D001469 ORTHO05D001648 1.6e-11 73.6 96 47.9
MD14G1147300 Malus domestica HOM05D001469 ORTHO05D001648 1.6e-11 73.6 68 55.9
Thecc.03G140600 Theobroma cacao HOM05D001469 ORTHO05D001648 1.6e-11 73.6 66 60.6
arahy.Tifrunner.gnm1.ann1.WNZL0Z Arachis hypogaea HOM05D001469 ORTHO05D001648 2.1e-11 73.2 68 60.3
Lsat_1_v5_gn_5_10060 Lactuca sativa HOM05D001469 ORTHO05D001648 2.7e-11 72.8 66 59.1
Lj9A487T48 Lonicera japonica HOM05D001469 ORTHO05D001648 2.7e-11 72.8 107 45.8
Psat7g039480 Pisum sativum HOM05D001469 ORTHO05D001648 2.7e-11 72.8 68 57.4
BcaB07g29814 Brassica carinata HOM05D001469 ORTHO05D001648 3.6e-11 72.4 109 45.0
Cpa.g.sc13.174 Carica papaya HOM05D001469 ORTHO05D001648 4.7e-11 72.0 144 35.4
Phvul.002G281400 Phaseolus vulgaris HOM05D001469 ORTHO05D001648 4.7e-11 72.0 67 59.7
SGA_v2.0_scaffold168G38545 Striga asiatica HOM05D001469 ORTHO05D001648 4.7e-11 72.0 95 46.3
AT5G07300 Arabidopsis thaliana HOM05D001469 ORTHO05D001648 8.0e-11 71.2 68 55.9
Manes.14G044800 Manihot esculenta HOM05D001469 ORTHO05D001648 8.0e-11 71.2 68 52.9
Gohir.D11G041900 Gossypium hirsutum HOM05D001469 ORTHO05D001648 1.0e-10 70.9 66 57.6
Gorai.007G045000 Gossypium raimondii HOM05D001469 ORTHO05D001648 1.0e-10 70.9 66 57.6
Nitab4.5_0000976g0030 Nicotiana tabacum HOM05D001469 ORTHO05D001648 1.0e-10 70.9 104 45.2
Glyma.06G163800 Glycine max HOM05D001469 ORTHO05D001648 1.4e-10 70.5 109 44.0
Actinidia08909 Actinidia chinensis HOM05D001469 ORTHO05D001648 1.8e-10 70.1 68 55.9
Actinidia25519 Actinidia chinensis HOM05D001469 ORTHO05D001648 1.8e-10 70.1 108 43.5
AL6G17540 Arabidopsis lyrata HOM05D001469 ORTHO05D001648 1.8e-10 70.1 68 54.4
BcaC03g18105 Brassica carinata HOM05D001469 ORTHO05D001648 1.8e-10 70.1 111 40.5
C02p61690 Brassica napus HOM05D001469 ORTHO05D001648 1.8e-10 70.1 111 40.5
BolC2t12227H Brassica oleracea HOM05D001469 ORTHO05D001648 1.8e-10 70.1 111 40.5
Oeu046605.2 Olea europaea HOM05D001469 ORTHO05D001648 1.8e-10 70.1 69 56.5
A06p28580 Brassica napus HOM05D001469 ORTHO05D001648 2.3e-10 69.7 110 41.8
BraA06t25803Z Brassica rapa HOM05D001469 ORTHO05D001648 2.3e-10 69.7 110 41.8
Ca_16828_v3 Cicer arietinum L. HOM05D001469 ORTHO05D001648 2.3e-10 69.7 141 36.2
Lsat_1_v5_gn_1_30260 Lactuca sativa HOM05D001469 ORTHO05D001648 2.3e-10 69.7 66 54.5
Lsat_1_v5_gn_4_84480 Lactuca sativa HOM05D001469 ORTHO05D001648 2.3e-10 69.7 66 56.1
CARHR205850 Cardamine hirsuta HOM05D001469 ORTHO05D001648 3.0e-10 69.3 67 58.2
Dinv23225 Davidia involucrata HOM05D001469 ORTHO05D001648 3.0e-10 69.3 68 58.8
Thhalv10003523m.g Eutrema salsugineum HOM05D001469 ORTHO05D001648 3.0e-10 69.3 109 40.4
Lalb_Chr13g0296951 Lupinus albus HOM05D001469 ORTHO05D001648 3.0e-10 69.3 68 55.9
Nn4g22132 Nelumbo nucifera HOM05D001469 ORTHO05D001648 3.0e-10 69.3 68 58.8
Sp2g25090 Schrenkiella parvula HOM05D001469 ORTHO05D001648 3.0e-10 69.3 106 41.5
Atru.chr6.1917 Acer truncatum HOM05D001469 ORTHO05D001648 3.9e-10 68.9 66 54.5
CSS0042941 Camellia sinensis var. sinensis HOM05D001469 ORTHO05D001648 3.9e-10 68.9 69 52.2
Gohir.A11G038600 Gossypium hirsutum HOM05D001469 ORTHO05D001648 3.9e-10 68.9 66 56.1
Nitab4.5_0010249g0010 Nicotiana tabacum HOM05D001469 ORTHO05D001648 3.9e-10 68.9 104 44.2
A02p41780 Brassica napus HOM05D001469 ORTHO05D001648 5.2e-10 68.6 111 39.6
Duzib205G0496 Durio zibethinus HOM05D001469 ORTHO05D001648 5.2e-10 68.6 66 54.5
RcHm_v2.0_Chr7g0188701 Rosa chinensis HOM05D001469 ORTHO05D001648 5.2e-10 68.6 68 52.9
Aa31LG11G1610 Aethionema arabicum HOM05D001469 ORTHO05D001648 6.7e-10 68.2 69 55.1
TWI23G0492 Tripterygium wilfordii HOM05D001469 ORTHO05D001648 6.7e-10 68.2 65 58.5
Aqoxy5G03119 Aquilegia oxysepala HOM05D001469 ORTHO05D001648 8.8e-10 67.8 69 53.6
BcaC01g02446 Brassica carinata HOM05D001469 ORTHO05D001648 8.8e-10 67.8 110 40.9
C03p65200 Brassica napus HOM05D001469 ORTHO05D001648 8.8e-10 67.8 110 40.9
BolC3t18772H Brassica oleracea HOM05D001469 ORTHO05D001648 8.8e-10 67.8 110 40.9
Phvul.009G161100 Phaseolus vulgaris HOM05D001469 ORTHO05D001648 8.8e-10 67.8 66 57.6
HanXRQChr10g0316021 Helianthus annuus HOM05D001469 ORTHO05D001648 1.1e-09 67.4 66 54.5
Sopen06g026110 Solanum pennellii HOM05D001469 ORTHO05D001648 1.1e-09 67.4 68 51.5
AL8G38660 Arabidopsis lyrata HOM05D001469 ORTHO05D001648 1.5e-09 67.0 106 41.5
C09p69450 Brassica napus HOM05D001469 ORTHO05D001648 1.5e-09 67.0 68 51.5
BolC9t59690H Brassica oleracea HOM05D001469 ORTHO05D001648 1.5e-09 67.0 68 51.5
VMungo1309G0299 Vigna mungo HOM05D001469 ORTHO05D001648 1.5e-09 67.0 98 45.9
AT5G61900 Arabidopsis thaliana HOM05D001469 ORTHO05D001648 2.0e-09 66.6 109 38.5
AT5G61910 Arabidopsis thaliana HOM05D001469 ORTHO05D001648 2.0e-09 66.6 109 38.5
Haze_07097 Corylus avellana HOM05D001469 ORTHO05D001648 2.0e-09 66.6 68 54.4
Sc04g0000190 Simmondsia chinensis HOM05D001469 ORTHO05D001648 2.0e-09 66.6 72 54.2
Gorai.003G116900 Gossypium raimondii HOM05D001469 ORTHO05D001648 2.6e-09 66.2 106 38.7
Solyc06g068840.3 Solanum lycopersicum HOM05D001469 ORTHO05D001648 2.6e-09 66.2 68 51.5
BcaC06g32450 Brassica carinata HOM05D001469 ORTHO05D001648 3.3e-09 65.9 68 51.5
Gohir.D03G110500 Gossypium hirsutum HOM05D001469 ORTHO05D001648 3.3e-09 65.9 66 51.5
Duzib068G1059 Durio zibethinus HOM05D001469 ORTHO05D001648 4.4e-09 65.5 66 53.0
Gohir.D09G248700 Gossypium hirsutum HOM05D001469 ORTHO05D001648 4.4e-09 65.5 65 53.8
Gorai.006G273100 Gossypium raimondii HOM05D001469 ORTHO05D001648 4.4e-09 65.5 65 53.8
A10p29080 Brassica napus HOM05D001469 ORTHO05D001648 7.4e-09 64.7 70 51.4
BraA10t44956Z Brassica rapa HOM05D001469 ORTHO05D001648 7.4e-09 64.7 70 51.4
Carub.0008s2258 Capsella rubella HOM05D001469 ORTHO05D001648 7.4e-09 64.7 99 39.4
Thhalv10012927m.g Eutrema salsugineum HOM05D001469 ORTHO05D001648 7.4e-09 64.7 143 33.6
FvH4_5g09500 Fragaria vesca HOM05D001469 ORTHO05D001648 7.4e-09 64.7 68 51.5
FAN04G0584 Fragaria x ananassa HOM05D001469 ORTHO05D001648 7.4e-09 64.7 68 51.5
Manes.06G126900 Manihot esculenta HOM05D001469 ORTHO05D001648 7.4e-09 64.7 68 50.0
Nitab4.5_0005097g0040 Nicotiana tabacum HOM05D001469 ORTHO05D001648 9.7e-09 64.3 68 50.0
MELO3C031042.2 Cucumis melo HOM05D018665 ORTHO05D022380 1.3e-08 63.9 35 85.7
Glyma.04G201500 Glycine max HOM05D001469 ORTHO05D001648 1.3e-08 63.9 109 42.2
unitig_0.g347 Utricularia gibba HOM05D001469 ORTHO05D001648 1.3e-08 63.9 104 42.3
Actinidia18300 Actinidia chinensis HOM05D001469 ORTHO05D001648 2.2e-08 63.2 68 54.4
HanXRQChr09g0273831 Helianthus annuus HOM05D001469 ORTHO05D001648 2.2e-08 63.2 69 50.7
FAN18G2599 Fragaria x ananassa HOM05D001469 ORTHO05D001648 2.8e-08 62.8 68 50.0
THA.LOC104804658 Tarenaya hassleriana HOM05D001469 ORTHO05D001648 3.7e-08 62.4 105 42.9
Aa31LG3G19070 Aethionema arabicum HOM05D001469 ORTHO05D001648 4.8e-08 62.0 106 38.7
C03p03600 Brassica napus HOM05D001469 ORTHO05D001648 4.8e-08 62.0 145 30.3
BolC3t12900H Brassica oleracea HOM05D001469 ORTHO05D001648 4.8e-08 62.0 145 30.3
Carub.0006s0626 Capsella rubella HOM05D001469 ORTHO05D001648 4.8e-08 62.0 141 33.3
Nitab4.5_0001841g0070 Nicotiana tabacum HOM05D001469 ORTHO05D001648 4.8e-08 62.0 109 38.5
Rhsim08G0197500 Rhododendron simsii HOM05D001469 ORTHO05D001648 4.8e-08 62.0 105 39.0
FAN13G2020 Fragaria x ananassa HOM05D001469 ORTHO05D001648 8.2e-08 61.2 68 50.0
BraA03t09674Z Brassica rapa HOM05D001469 ORTHO05D001648 1.4e-07 60.5 171 27.5
Eucgr.K00066 Eucalyptus grandis HOM05D001469 ORTHO05D001648 1.4e-07 60.5 70 48.6
MBI18_g04708_MAGBIO Magnolia biondii HOM05D001469 ORTHO05D001648 1.4e-07 60.5 71 49.3
SalBow1G8623 Salvia bowleyana HOM05D001469 ORTHO05D001648 1.4e-07 60.5 127 38.6
Cfa018706 Carpinus fangiana HOM05D001469 ORTHO05D001648 1.8e-07 60.1 68 50.0
PGR083G0952 Punica granatum HOM05D001469 ORTHO05D001648 1.8e-07 60.1 66 51.5
CiPaw.07G012200 Carya illinoinensis HOM05D001469 ORTHO05D001648 2.4e-07 59.7 69 47.8
Lj5A87G66 Lonicera japonica HOM05D001469 ORTHO05D001648 4.1e-07 58.9 89 43.8
EL10Ac5g11285 Beta vulgaris HOM05D001469 ORTHO05D001648 5.3e-07 58.5 70 50.0
PSO407G0323 Papaver somniferum HOM05D001469 ORTHO05D001648 5.3e-07 58.5 70 45.7
THA.LOC104818282 Tarenaya hassleriana HOM05D001469 ORTHO05D001648 5.3e-07 58.5 143 32.2
Gohir.A09G247900 Gossypium hirsutum HOM05D001469 ORTHO05D001648 7.0e-07 58.2 67 52.2
QL03p060617 Quercus lobata HOM05D001469 ORTHO05D001648 7.0e-07 58.2 69 47.8
Dinv03770 Davidia involucrata HOM05D001469 ORTHO05D001648 9.1e-07 57.8 65 49.2
Glyma.03G242100 Glycine max HOM05D001469 ORTHO05D001648 9.1e-07 57.8 70 44.3
Potri.012G108200 Populus trichocarpa HOM05D001469 ORTHO05D001648 9.1e-07 57.8 66 51.5
Potri.015G106400 Populus trichocarpa HOM05D001469 ORTHO05D001648 9.1e-07 57.8 65 52.3
CiPaw.07G012100 Carya illinoinensis HOM05D001469 ORTHO05D001648 1.2e-06 57.4 69 46.4
QL03p053454 Quercus lobata HOM05D001469 ORTHO05D001648 1.2e-06 57.4 74 50.0
Sp6g35590 Schrenkiella parvula HOM05D001469 ORTHO05D001648 1.6e-06 57.0 106 38.7
A03p03180 Brassica napus HOM05D001469 ORTHO05D001648 2.0e-06 56.6 145 29.7
Lsat_1_v5_gn_4_140940 Lactuca sativa HOM05D001469 ORTHO05D001648 2.0e-06 56.6 80 40.0
PSO017G6660 Papaver somniferum HOM05D001469 ORTHO05D001648 2.0e-06 56.6 40 70.0
PSO170G5326 Papaver somniferum HOM05D001469 ORTHO05D001648 2.0e-06 56.6 69 44.9
PSO478G3695 Papaver somniferum HOM05D001469 ORTHO05D001648 2.0e-06 56.6 40 70.0
Potri.013G029100 Populus trichocarpa HOM05D001469 ORTHO05D001648 2.0e-06 56.6 70 45.7
CSS0001052 Camellia sinensis var. sinensis HOM05D001469 ORTHO05D001648 2.6e-06 56.2 72 45.8
CSS0043837 Camellia sinensis var. sinensis HOM05D001469 ORTHO05D001648 2.6e-06 56.2 72 45.8
CiPaw.08G175900 Carya illinoinensis HOM05D001469 ORTHO05D001648 2.6e-06 56.2 69 44.9
Dinv01784 Davidia involucrata HOM05D001469 ORTHO05D001648 3.5e-06 55.8 74 44.6
Actinidia05740 Actinidia chinensis HOM05D001469 ORTHO05D001648 4.5e-06 55.5 74 44.6
BcaB01g06353 Brassica carinata HOM05D001469 ORTHO05D001648 4.5e-06 55.5 111 33.3
BcaC07g41920 Brassica carinata HOM05D001469 ORTHO05D001648 4.5e-06 55.5 70 50.0
C08p49790 Brassica napus HOM05D001469 ORTHO05D001648 4.5e-06 55.5 70 50.0
Psat3g009200 Pisum sativum HOM05D001469 ORTHO05D001648 4.5e-06 55.5 65 41.5
THA.LOC104821056 Tarenaya hassleriana HOM05D001469 ORTHO05D001648 4.5e-06 55.5 71 50.7
Cfa006514 Carpinus fangiana HOM05D001469 ORTHO05D001648 5.9e-06 55.1 74 44.6
CiPaw.08G134000 Carya illinoinensis HOM05D001469 ORTHO05D001648 5.9e-06 55.1 71 45.1
ClCG11G011220 Citrullus lanatus HOM05D001469 ORTHO05D001648 5.9e-06 55.1 73 45.2
Nn4g26065 Nelumbo nucifera HOM05D001469 ORTHO05D001648 5.9e-06 55.1 72 44.4
TPR.G6937 Trifolium pratense HOM05D001469 ORTHO05D001648 5.9e-06 55.1 65 41.5
CiPaw.08G169400 Carya illinoinensis HOM05D001469 ORTHO05D017168 7.7e-06 54.7 71 42.3
AUR62009539 Chenopodium quinoa HOM05D001469 ORTHO05D001648 7.7e-06 54.7 69 47.8
Migut.H02535 Erythranthe guttata HOM05D001469 ORTHO05D001648 7.7e-06 54.7 74 45.9
Phvul.006G096200 Phaseolus vulgaris HOM05D001469 ORTHO05D001648 7.7e-06 54.7 65 43.1
QL03p061144 Quercus lobata HOM05D001469 ORTHO05D001648 7.7e-06 54.7 74 43.2


User provided reference genes

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