Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C028540.2 Cucumis melo HOM05D001816 ORTHO05D002001 1.2e-23 112.5 62 100.0
ClCG10G011880 Citrullus lanatus HOM05D001816 ORTHO05D002001 1.7e-17 92.0 51 94.1
CsaV3_3G031480 Cucumis sativus L. HOM05D001816 ORTHO05D002001 1.7e-17 92.0 51 94.1
MELO3C027271.2 Cucumis melo HOM05D001816 ORTHO05D026252 2.2e-17 91.7 50 96.0
Sed0023914 Sechium edule HOM05D001816 ORTHO05D002001 7.0e-16 86.7 51 88.2
Sed0006167 Sechium edule HOM05D001816 ORTHO05D002001 9.2e-16 86.3 50 90.0
Sed0023453 Sechium edule HOM05D001816 ORTHO05D002001 9.2e-16 86.3 50 90.0
Ciclev10030624m.g Citrus clementina HOM05D001816 ORTHO05D002001 1.0e-14 82.8 50 86.0
Haze_00547 Corylus avellana HOM05D001816 ORTHO05D002001 1.7e-14 82.0 50 84.0
Cfa015943 Carpinus fangiana HOM05D001816 ORTHO05D002001 2.3e-14 81.6 50 84.0
MD13G1007000 Malus domestica HOM05D001816 ORTHO05D002001 3.9e-14 80.9 50 82.0
MD16G1000800 Malus domestica HOM05D001816 ORTHO05D002001 3.9e-14 80.9 50 82.0
GSVIVG01012030001 Vitis vinifera HOM05D001816 ORTHO05D002001 6.6e-14 80.1 50 82.0
CiPaw.05G167200 Carya illinoinensis HOM05D001816 ORTHO05D002001 8.6e-14 79.7 50 82.0
Manes.11G108600 Manihot esculenta HOM05D001816 ORTHO05D002001 1.1e-13 79.3 54 75.9
Potri.005G094300 Populus trichocarpa HOM05D001816 ORTHO05D002001 1.1e-13 79.3 53 77.4
Gohir.D02G187500 Gossypium hirsutum HOM05D001816 ORTHO05D002001 1.9e-13 78.6 53 75.5
Gorai.005G210000 Gossypium raimondii HOM05D001816 ORTHO05D002001 1.9e-13 78.6 53 75.5
Manes.04G066500 Manihot esculenta HOM05D001816 ORTHO05D002001 1.9e-13 78.6 54 75.9
Prupe.1G345900 Prunus persica HOM05D001816 ORTHO05D002001 1.9e-13 78.6 50 80.0
COL.COLO4_03690 Corchorus olitorius HOM05D001816 ORTHO05D002001 2.5e-13 78.2 53 73.6
QL03p043876 Quercus lobata HOM05D001816 ORTHO05D002001 2.5e-13 78.2 50 80.0
Carub.0001s3933 Capsella rubella HOM05D001816 ORTHO05D002001 3.3e-13 77.8 53 77.4
MSTRG.3 Avicennia marina HOM05D001816 ORTHO05D002001 4.3e-13 77.4 53 77.4
Gohir.D12G138166 Gossypium hirsutum HOM05D001816 ORTHO05D002001 4.3e-13 77.4 53 73.6
Gorai.008G149700 Gossypium raimondii HOM05D001816 ORTHO05D002001 4.3e-13 77.4 53 73.6
Oeu028987.2 Olea europaea HOM05D001816 ORTHO05D002001 4.3e-13 77.4 50 80.0
Thecc.02G161500 Theobroma cacao HOM05D001816 ORTHO05D002001 4.3e-13 77.4 50 76.0
Sp1g37060 Schrenkiella parvula HOM05D001816 ORTHO05D002001 5.6e-13 77.0 49 81.6
Duzib052G1218 Durio zibethinus HOM05D001816 ORTHO05D002001 9.5e-13 76.3 53 71.7
AT1G50200 Arabidopsis thaliana HOM05D001816 ORTHO05D002001 1.2e-12 75.9 53 75.5
Duzib248G0227 Durio zibethinus HOM05D001816 ORTHO05D002001 1.6e-12 75.5 53 71.7
THA.LOC104801893 Tarenaya hassleriana HOM05D001816 ORTHO05D002001 1.6e-12 75.5 53 73.6
BcaB04g17263 Brassica carinata HOM05D001816 ORTHO05D002001 2.1e-12 75.1 49 79.6
BcaC01g01218 Brassica carinata HOM05D001816 ORTHO05D002001 2.1e-12 75.1 49 79.6
BcaC08g43202 Brassica carinata HOM05D001816 ORTHO05D002001 2.1e-12 75.1 49 79.6
A06p03300 Brassica napus HOM05D001816 ORTHO05D002001 2.1e-12 75.1 49 79.6
A08p03280 Brassica napus HOM05D001816 ORTHO05D002001 2.1e-12 75.1 49 79.6
C06p05260 Brassica napus HOM05D001816 ORTHO05D002001 2.1e-12 75.1 49 79.6
BolC6t35631H Brassica oleracea HOM05D001816 ORTHO05D002001 2.1e-12 75.1 49 79.6
BolC6t35636H Brassica oleracea HOM05D001816 ORTHO05D002001 2.1e-12 75.1 49 79.6
BraA06t23540Z Brassica rapa HOM05D001816 ORTHO05D002001 2.1e-12 75.1 49 79.6
BraA08t32361Z Brassica rapa HOM05D001816 ORTHO05D002001 2.1e-12 75.1 49 79.6
Gohir.A03G164100 Gossypium hirsutum HOM05D001816 ORTHO05D002001 2.1e-12 75.1 53 73.6
Hma1.2p1_0419F.1_g149540 Hydrangea macrophylla HOM05D001816 ORTHO05D002001 2.1e-12 75.1 50 74.0
CARHR040290 Cardamine hirsuta HOM05D001816 ORTHO05D002001 2.8e-12 74.7 53 75.5
Rhsim03G0224600 Rhododendron simsii HOM05D001816 ORTHO05D002001 3.6e-12 74.3 50 76.0
TAR629G2582 Trochodendron aralioides HOM05D001816 ORTHO05D002001 3.6e-12 74.3 49 77.6
Actinidia08767 Actinidia chinensis HOM05D001816 ORTHO05D002001 4.7e-12 73.9 50 78.0
AL1G57820 Arabidopsis lyrata HOM05D001816 ORTHO05D002001 6.2e-12 73.6 53 73.6
BcaB07g33474 Brassica carinata HOM05D001816 ORTHO05D002001 6.2e-12 73.6 49 77.6
Dinv29120 Davidia involucrata HOM05D001816 ORTHO05D002001 6.2e-12 73.6 50 74.0
GSVIVG01024320001 Vitis vinifera HOM05D001816 ORTHO05D002001 6.2e-12 73.6 49 79.6
Eucgr.J00856 Eucalyptus grandis HOM05D001816 ORTHO05D002001 8.1e-12 73.2 50 74.0
Nn8g39979 Nelumbo nucifera HOM05D001816 ORTHO05D002001 8.1e-12 73.2 53 71.7
SalBow2G2560 Salvia bowleyana HOM05D001816 ORTHO05D002001 8.1e-12 73.2 53 73.6
Migut.F00930 Erythranthe guttata HOM05D001816 ORTHO05D002001 1.1e-11 72.8 50 74.0
Actinidia24519 Actinidia chinensis HOM05D001816 ORTHO05D002001 1.4e-11 72.4 50 76.0
Actinidia27035 Actinidia chinensis HOM05D001816 ORTHO05D002001 1.4e-11 72.4 50 76.0
Aa31LG10G3980 Aethionema arabicum HOM05D001816 ORTHO05D002001 1.4e-11 72.4 53 71.7
C06p05090 Brassica napus HOM05D001816 ORTHO05D002001 1.4e-11 72.4 49 77.6
Sabra05G0078100 Salix brachista HOM05D001816 ORTHO05D002001 1.4e-11 72.4 53 69.8
Atru.chr9.1432 Acer truncatum HOM05D001816 ORTHO05D002001 1.8e-11 72.0 49 77.6
Nitab4.5_0000021g0810 Nicotiana tabacum HOM05D001816 ORTHO05D002001 1.8e-11 72.0 50 76.0
Nitab4.5_0009278g0020 Nicotiana tabacum HOM05D001816 ORTHO05D002001 1.8e-11 72.0 50 76.0
Sopen03g028060 Solanum pennellii HOM05D001816 ORTHO05D002001 1.8e-11 72.0 50 76.0
Lj3g0010854 Lotus japonicus HOM05D001816 ORTHO05D002001 2.3e-11 71.6 50 72.0
Lj3g0027168 Lotus japonicus HOM05D001816 ORTHO05D002001 2.3e-11 71.6 50 72.0
Psat7g173440 Pisum sativum HOM05D001816 ORTHO05D002001 3.1e-11 71.2 51 72.5
CSS0038936 Camellia sinensis var. sinensis HOM05D001816 ORTHO05D002001 4.0e-11 70.9 50 72.0
Ca_19037_v3 Cicer arietinum L. HOM05D001816 ORTHO05D002001 4.0e-11 70.9 50 72.0
Hund19354 Selenicereus undatus HOM05D001816 ORTHO05D002001 4.0e-11 70.9 49 75.5
THA.LOC104815233 Tarenaya hassleriana HOM05D001816 ORTHO05D002001 4.0e-11 70.9 49 75.5
HanXRQChr11g0337711 Helianthus annuus HOM05D001816 ORTHO05D002001 5.2e-11 70.5 50 74.0
Medtr4g074640 Medicago truncatula HOM05D001816 ORTHO05D002001 5.2e-11 70.5 51 70.6
Peaxi162Scf00516g00523 Petunia axillaris HOM05D001816 ORTHO05D002001 5.2e-11 70.5 50 74.0
vmacro06369 Vaccinium macrocarpon HOM05D001816 ORTHO05D002001 5.2e-11 70.5 50 70.0
PGR044G0467 Punica granatum HOM05D001816 ORTHO05D002001 6.8e-11 70.1 50 72.0
TWI77G0632 Tripterygium wilfordii HOM05D001816 ORTHO05D002001 6.8e-11 70.1 53 67.9
Thhalv10011205m.g Eutrema salsugineum HOM05D001816 ORTHO05D002001 8.9e-11 69.7 53 67.9
Solyc03g097290.4 Solanum lycopersicum HOM05D001816 ORTHO05D002001 8.9e-11 69.7 50 74.0
Ah.08g210750 Amaranthus hybridus HOM05D001816 ORTHO05D002001 1.2e-10 69.3 50 72.0
CAN.G732.34 Capsicum annuum HOM05D001816 ORTHO05D002001 1.2e-10 69.3 50 72.0
Cc02_g00090 Coffea canephora HOM05D001816 ORTHO05D002001 1.2e-10 69.3 50 74.0
Glyma.11G102100 Glycine max HOM05D001816 ORTHO05D002001 1.2e-10 69.3 50 70.0
Ah.15g091020 Amaranthus hybridus HOM05D001816 ORTHO05D002001 1.5e-10 68.9 50 70.0
Lsat_1_v5_gn_7_108581 Lactuca sativa HOM05D001816 ORTHO05D002001 1.5e-10 68.9 50 74.0
Lj8C169G8 Lonicera japonica HOM05D001816 ORTHO05D002001 1.5e-10 68.9 50 72.0
PSO063G5047 Papaver somniferum HOM05D001816 ORTHO05D002001 1.5e-10 68.9 53 67.9
PSO111G0090 Papaver somniferum HOM05D001816 ORTHO05D002001 1.5e-10 68.9 53 67.9
Peaxi162Scf00133g00523 Petunia axillaris HOM05D001816 ORTHO05D002001 1.5e-10 68.9 50 72.0
VMungo1127G1305 Vigna mungo HOM05D001816 ORTHO05D002001 1.5e-10 68.9 50 70.0
AUR62015043 Chenopodium quinoa HOM05D001816 ORTHO05D002001 2.0e-10 68.6 47 78.7
Lalb_Chr03g0024831 Lupinus albus HOM05D001816 ORTHO05D002001 2.0e-10 68.6 50 70.0
TPR.G32335 Trifolium pratense HOM05D001816 ORTHO05D002001 2.0e-10 68.6 51 68.6
unitig_62.g23836 Utricularia gibba HOM05D001816 ORTHO05D002001 2.6e-10 68.2 49 73.5
AUR62028574 Chenopodium quinoa HOM05D001816 ORTHO05D002001 3.4e-10 67.8 47 78.7
AUR62033529 Chenopodium quinoa HOM05D001816 ORTHO05D002001 3.4e-10 67.8 47 78.7
Cc11_g00060 Coffea canephora HOM05D001816 ORTHO05D002001 3.4e-10 67.8 50 74.0
Phvul.011G031100 Phaseolus vulgaris HOM05D001816 ORTHO05D002001 3.4e-10 67.8 53 66.0
unitig_52.g17019 Utricularia gibba HOM05D001816 ORTHO05D002001 4.4e-10 67.4 51 70.6
Glyma.12G027800 Glycine max HOM05D001816 ORTHO05D002001 5.8e-10 67.0 50 68.0
FvH4_4g36780 Fragaria vesca HOM05D001816 ORTHO05D002001 1.3e-09 65.9 49 69.4
FAN07G1183 Fragaria x ananassa HOM05D001816 ORTHO05D002001 1.3e-09 65.9 49 69.4
FAN12G0939 Fragaria x ananassa HOM05D001816 ORTHO05D002001 1.3e-09 65.9 49 69.4
FAN17G1219 Fragaria x ananassa HOM05D001816 ORTHO05D002001 1.3e-09 65.9 49 69.4
RcHm_v2.0_Chr4g0446511 Rosa chinensis HOM05D001816 ORTHO05D002001 1.3e-09 65.9 49 69.4
BraA05t20939Z Brassica rapa HOM05D001816 ORTHO05D002001 1.7e-09 65.5 53 66.0
AUR62017503 Chenopodium quinoa HOM05D001816 ORTHO05D002001 1.7e-09 65.5 47 76.6
PSO782G0984 Papaver somniferum HOM05D001816 ORTHO05D002001 2.2e-09 65.1 50 66.0
TWI74G1422 Tripterygium wilfordii HOM05D001816 ORTHO05D002001 2.9e-09 64.7 53 62.3
A05p20290 Brassica napus HOM05D001816 ORTHO05D002001 3.7e-09 64.3 53 64.2
Sc06g0002420 Simmondsia chinensis HOM05D001816 ORTHO05D002001 4.9e-09 63.9 50 68.0
ECA236G4276 Erigeron canadensis HOM05D001816 ORTHO05D002001 6.4e-09 63.5 50 64.0
CDE05G2317 Ceratophyllum demersum HOM05D001816 ORTHO05D002001 1.1e-08 62.8 54 61.1
MBI12_g22457_MAGBIO Magnolia biondii HOM05D001816 ORTHO05D002001 1.9e-08 62.0 43 72.1
EL10Ac7g16954 Beta vulgaris HOM05D001816 ORTHO05D002001 2.4e-08 61.6 47 68.1
SGA_v2.0_scaffold59G20731 Striga asiatica HOM05D001816 ORTHO05D002001 3.2e-08 61.2 73 52.1
Lalb_Chr01g0001481 Lupinus albus HOM05D001816 ORTHO05D002001 5.4e-08 60.5 50 62.0
MBI02_g31764_MAGBIO Magnolia biondii HOM05D001816 ORTHO05D002001 7.1e-08 60.1 43 69.8
arahy.Tifrunner.gnm1.ann1.8P6R80 Arachis hypogaea HOM05D001816 ORTHO05D002001 9.2e-08 59.7 50 60.0
arahy.Tifrunner.gnm1.ann1.56UDE7 Arachis hypogaea HOM05D001816 ORTHO05D002001 1.2e-07 59.3 50 60.0
HPP92_007958 Vanilla planifolia HOM05D001816 ORTHO05D002001 1.2e-07 59.3 51 54.9
AagrBONN_evm.TU.Sc2ySwM_228.5790 Anthoceros agrestis HOM05D001816 ORTHO05D002001 1.6e-07 58.9 50 60.0
AagrBONN_evm.TU.Sc2ySwM_344.917 Anthoceros agrestis HOM05D001816 ORTHO05D002001 1.6e-07 58.9 50 60.0
Aqoxy7G03361 Aquilegia oxysepala HOM05D001816 ORTHO05D002001 1.6e-07 58.9 50 62.0
ATR0019G036 Amborella trichopoda HOM05D001816 ORTHO05D002001 2.7e-07 58.2 53 54.7
DCAR_020432 Daucus carota HOM05D001816 ORTHO05D002001 6.0e-07 57.0 84 45.2
Zm00001eb409500 Zea mays HOM05D001816 ORTHO05D002001 2.3e-06 55.1 49 57.1
ATR0326G040 Amborella trichopoda HOM05D001816 ORTHO05D002001 8.6e-06 53.1 53 50.9


User provided reference genes

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