Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C027676.2 Cucumis melo HOM05D004229 ORTHO05D025211 1.1e-201 706.4 349 100.0
MELO3C030131.2 Cucumis melo HOM05D004229 ORTHO05D025211 1.7e-21 107.8 82 68.3
MELO3C012405.2 Cucumis melo HOM05D004229 ORTHO05D005468 1.7e-18 97.8 51 94.1
CsaV3_5G036050 Cucumis sativus L. HOM05D004229 ORTHO05D005468 1.7e-18 97.8 51 94.1
ClCG05G021220 Citrullus lanatus HOM05D004229 ORTHO05D005468 3.8e-18 96.7 51 92.2
MELO3C031144.2 Cucumis melo HOM05D004229 ORTHO05D171339 3.2e-17 93.6 43 97.7
Sed0026489 Sechium edule HOM05D004229 ORTHO05D005468 9.4e-17 92.0 51 86.3
Cfa001676 Carpinus fangiana HOM05D004229 ORTHO05D005468 5.2e-15 86.3 51 78.4
Haze_16858 Corylus avellana HOM05D004229 ORTHO05D005468 5.2e-15 86.3 51 78.4
Glyma.10G208100 Glycine max HOM05D004229 ORTHO05D005468 8.8e-15 85.5 51 78.4
QL08p054613 Quercus lobata HOM05D004229 ORTHO05D005468 8.8e-15 85.5 51 80.4
arahy.Tifrunner.gnm1.ann1.EYW761 Arachis hypogaea HOM05D004229 ORTHO05D005468 1.2e-14 85.1 78 55.1
Lj5g0013282 Lotus japonicus HOM05D004229 ORTHO05D005468 1.2e-14 85.1 51 78.4
MD01G1103400 Malus domestica HOM05D004229 ORTHO05D005468 1.2e-14 85.1 51 80.4
QL08p054435 Quercus lobata HOM05D004229 ORTHO05D005468 2.0e-14 84.3 51 78.4
Psat6g180120 Pisum sativum HOM05D004229 ORTHO05D005468 2.6e-14 84.0 51 74.5
Prupe.2G209100 Prunus persica HOM05D004229 ORTHO05D005468 2.6e-14 84.0 51 76.5
PGR142G2592 Punica granatum HOM05D004229 ORTHO05D005468 2.6e-14 84.0 51 76.5
RcHm_v2.0_Chr1g0362641 Rosa chinensis HOM05D004229 ORTHO05D005468 2.6e-14 84.0 51 78.4
CSS0012456 Camellia sinensis var. sinensis HOM05D004229 ORTHO05D005468 3.4e-14 83.6 51 78.4
Rhsim03G0230200 Rhododendron simsii HOM05D004229 ORTHO05D005468 3.4e-14 83.6 51 78.4
Potri.008G035600 Populus trichocarpa HOM05D004229 ORTHO05D005468 4.4e-14 83.2 50 78.0
arahy.Tifrunner.gnm1.ann1.1PX64U Arachis hypogaea HOM05D004229 ORTHO05D005468 5.7e-14 82.8 78 53.8
FvH4_7g18830 Fragaria vesca HOM05D004229 ORTHO05D005468 5.7e-14 82.8 51 76.5
FAN03G3391 Fragaria x ananassa HOM05D004229 ORTHO05D005468 5.7e-14 82.8 51 76.5
FAN06G0013 Fragaria x ananassa HOM05D004229 ORTHO05D005468 5.7e-14 82.8 51 76.5
FAN06G0297 Fragaria x ananassa HOM05D004229 ORTHO05D005468 5.7e-14 82.8 51 76.5
FAN10G0146 Fragaria x ananassa HOM05D004229 ORTHO05D005468 5.7e-14 82.8 51 76.5
MELO3C029984.2 Cucumis melo HOM05D004229 ORTHO05D025211 7.5e-14 82.4 54 81.5
DCAR_006417 Daucus carota HOM05D004229 ORTHO05D005468 7.5e-14 82.4 51 76.5
Eucgr.G02865 Eucalyptus grandis HOM05D004229 ORTHO05D005468 7.5e-14 82.4 51 76.5
Actinidia38868 Actinidia chinensis HOM05D004229 ORTHO05D005468 9.8e-14 82.0 51 76.5
arahy.Tifrunner.gnm1.ann1.LJ1MV6 Arachis hypogaea HOM05D004229 ORTHO05D005468 9.8e-14 82.0 95 48.4
MD07G1170300 Malus domestica HOM05D004229 ORTHO05D005468 9.8e-14 82.0 51 76.5
GSVIVG01016224001 Vitis vinifera HOM05D004229 ORTHO05D005468 9.8e-14 82.0 51 76.5
MSTRG.27482 Avicennia marina HOM05D004229 ORTHO05D005468 1.3e-13 81.6 97 42.3
Dinv31228 Davidia involucrata HOM05D004229 ORTHO05D005468 1.3e-13 81.6 51 74.5
vmacro07123 Vaccinium macrocarpon HOM05D004229 ORTHO05D005468 1.3e-13 81.6 51 76.5
Actinidia34806 Actinidia chinensis HOM05D004229 ORTHO05D005468 1.7e-13 81.3 51 74.5
Ca_10545_v3 Cicer arietinum L. HOM05D004229 ORTHO05D005468 1.7e-13 81.3 51 72.5
Ciclev10031072m.g Citrus clementina HOM05D004229 ORTHO05D005468 1.7e-13 81.3 51 74.5
HanXRQChr09g0248221 Helianthus annuus HOM05D004229 ORTHO05D005468 1.7e-13 81.3 51 74.5
Manes.15G095600 Manihot esculenta HOM05D004229 ORTHO05D005468 1.7e-13 81.3 50 76.0
Duzib114G0264 Durio zibethinus HOM05D004229 ORTHO05D005468 2.2e-13 80.9 50 78.0
Medtr1g094200 Medicago truncatula HOM05D004229 ORTHO05D005468 2.2e-13 80.9 51 72.5
Phvul.005G180400 Phaseolus vulgaris HOM05D004229 ORTHO05D005468 2.2e-13 80.9 51 74.5
Sabra08G0023800 Salix brachista HOM05D004229 ORTHO05D005468 2.2e-13 80.9 50 74.0
CAN.G694.36 Capsicum annuum HOM05D004229 ORTHO05D005468 2.8e-13 80.5 51 72.5
Sabra10G0174900 Salix brachista HOM05D004229 ORTHO05D005468 2.8e-13 80.5 50 76.0
COL.COLO4_17138 Corchorus olitorius HOM05D004229 ORTHO05D005468 3.7e-13 80.1 50 76.0
Migut.F01959 Erythranthe guttata HOM05D004229 ORTHO05D005468 3.7e-13 80.1 68 57.4
Nitab4.5_0000096g0310 Nicotiana tabacum HOM05D004229 ORTHO05D005468 3.7e-13 80.1 51 72.5
Nitab4.5_0001760g0040 Nicotiana tabacum HOM05D004229 ORTHO05D005468 3.7e-13 80.1 51 72.5
VMungo1080G0141 Vigna mungo HOM05D004229 ORTHO05D005468 4.8e-13 79.7 51 74.5
HanXRQChr12g0376891 Helianthus annuus HOM05D004229 ORTHO05D005468 6.3e-13 79.3 51 72.5
Lj2C19G5 Lonicera japonica HOM05D004229 ORTHO05D005468 6.3e-13 79.3 69 60.9
Thecc.10G082900 Theobroma cacao HOM05D004229 ORTHO05D005468 6.3e-13 79.3 50 76.0
Cpa.g.sc1603.2 Carica papaya HOM05D004229 ORTHO05D005468 1.4e-12 78.2 51 72.5
SGA_v2.0_scaffold62G21390 Striga asiatica HOM05D004229 ORTHO05D005468 1.8e-12 77.8 97 41.2
FAN04G2411 Fragaria x ananassa HOM05D004229 ORTHO05D005468 2.4e-12 77.4 51 72.5
FAN18G2159 Fragaria x ananassa HOM05D004229 ORTHO05D005468 2.4e-12 77.4 51 74.5
Cc02_g10960 Coffea canephora HOM05D004229 ORTHO05D005468 3.1e-12 77.0 69 58.0
Lsat_1_v5_gn_9_70141 Lactuca sativa HOM05D004229 ORTHO05D005468 3.1e-12 77.0 51 70.6
arahy.Tifrunner.gnm1.ann1.ET3M0C Arachis hypogaea HOM05D004229 ORTHO05D005468 4.1e-12 76.6 57 66.7
Nn2g13792 Nelumbo nucifera HOM05D004229 ORTHO05D003832 4.1e-12 76.6 51 70.6
Potri.010G226600 Populus trichocarpa HOM05D004229 ORTHO05D005468 4.1e-12 76.6 50 74.0
TAR633G0060 Trochodendron aralioides HOM05D004229 ORTHO05D005468 4.1e-12 76.6 51 72.5
Sc20g0001740 Simmondsia chinensis HOM05D004229 ORTHO05D005468 7.0e-12 75.9 50 70.0
FvH4_5g35750 Fragaria vesca HOM05D004229 ORTHO05D005468 9.1e-12 75.5 51 72.5
Solyc05g055600.4 Solanum lycopersicum HOM05D004229 ORTHO05D005468 1.2e-11 75.1 52 69.2
Sopen05g034050 Solanum pennellii HOM05D004229 ORTHO05D005468 1.2e-11 75.1 52 69.2
TWI38G0761 Tripterygium wilfordii HOM05D004229 ORTHO05D005468 1.2e-11 75.1 51 72.5
ECA232G1554 Erigeron canadensis HOM05D004229 ORTHO05D005468 1.6e-11 74.7 51 68.6
FAN13G1026 Fragaria x ananassa HOM05D004229 ORTHO05D005468 1.6e-11 74.7 51 70.6
Oeu000792.2 Olea europaea HOM05D004229 ORTHO05D005468 1.6e-11 74.7 51 72.5
BcaB01g00152 Brassica carinata HOM05D004229 ORTHO05D005468 2.0e-11 74.3 51 66.7
BcaC07g39772 Brassica carinata HOM05D004229 ORTHO05D005468 2.0e-11 74.3 51 66.7
BcaNung06953 Brassica carinata HOM05D004229 ORTHO05D005468 2.0e-11 74.3 51 66.7
A09p47800 Brassica napus HOM05D004229 ORTHO05D005468 2.0e-11 74.3 51 66.7
C08p30050 Brassica napus HOM05D004229 ORTHO05D005468 2.0e-11 74.3 51 66.7
BolC8t50614H Brassica oleracea HOM05D004229 ORTHO05D005468 2.0e-11 74.3 51 66.7
BraA09t40237Z Brassica rapa HOM05D004229 ORTHO05D005468 2.0e-11 74.3 51 66.7
AL5G35970 Arabidopsis lyrata HOM05D004229 ORTHO05D005468 2.7e-11 73.9 51 68.6
CARHR164840 Cardamine hirsuta HOM05D004229 ORTHO05D005468 2.7e-11 73.9 51 68.6
Gohir.D04G004600 Gossypium hirsutum HOM05D004229 ORTHO05D005468 2.7e-11 73.9 50 72.0
Gorai.012G005800 Gossypium raimondii HOM05D004229 ORTHO05D005468 2.7e-11 73.9 50 72.0
AT3G54860 Arabidopsis thaliana HOM05D004229 ORTHO05D005468 5.9e-11 72.8 51 66.7
CANSAT56G0520 Cannabis sativa HOM05D004229 ORTHO05D005468 5.9e-11 72.8 50 68.0
Carub.0005s2147 Capsella rubella HOM05D004229 ORTHO05D005468 5.9e-11 72.8 51 66.7
Peaxi162Scf00176g01415 Petunia axillaris HOM05D004229 ORTHO05D005468 5.9e-11 72.8 61 60.7
Gohir.A05G411400 Gossypium hirsutum HOM05D004229 ORTHO05D005468 7.7e-11 72.4 50 70.0
Sp5g07560 Schrenkiella parvula HOM05D004229 ORTHO05D005468 7.7e-11 72.4 51 66.7
Aqoxy4G03296 Aquilegia oxysepala HOM05D004229 ORTHO05D005468 1.7e-10 71.2 50 70.0
Thhalv10010229m.g Eutrema salsugineum HOM05D004229 ORTHO05D005468 2.3e-10 70.9 51 66.7
PSO170G6718 Papaver somniferum HOM05D004229 ORTHO05D005468 2.3e-10 70.9 51 58.8
PSO339G0163 Papaver somniferum HOM05D004229 ORTHO05D005468 2.3e-10 70.9 51 58.8
THA.LOC104826473 Tarenaya hassleriana HOM05D004229 ORTHO05D005468 2.9e-10 70.5 51 66.7
Hund24846 Selenicereus undatus HOM05D004229 ORTHO05D005468 3.8e-10 70.1 50 70.0
Zm00001eb356850 Zea mays HOM05D004229 ORTHO05D005468 5.0e-10 69.7 51 60.8
Atru.chr12.837 Acer truncatum HOM05D004229 ORTHO05D005468 6.5e-10 69.3 51 68.6
Os04g0223000 Oryza sativa ssp. japonica HOM05D004229 ORTHO05D005468 1.1e-09 68.6 51 60.8
SalBow4G2353 Salvia bowleyana HOM05D004229 ORTHO05D005468 1.1e-09 68.6 56 62.5
SalBow4G2572 Salvia bowleyana HOM05D004229 ORTHO05D005468 1.1e-09 68.6 56 62.5
HPP92_008482 Vanilla planifolia HOM05D004229 ORTHO05D005468 1.9e-09 67.8 50 62.0
PSO801G0085 Papaver somniferum HOM05D004229 ORTHO05D005468 2.5e-09 67.4 52 59.6
MELO3C035290.2 Cucumis melo HOM05D004229 ORTHO05D025211 3.3e-09 67.0 57 61.4
EL10Ac7g16698 Beta vulgaris HOM05D004229 ORTHO05D005468 5.5e-09 66.2 51 62.7
unitig_899.g14450 Utricularia gibba HOM05D004229 ORTHO05D005468 7.2e-09 65.9 51 58.8
AUR62041379 Chenopodium quinoa HOM05D004229 ORTHO05D000001 2.8e-08 63.9 69 50.7
ATR1132G004 Amborella trichopoda HOM05D004229 ORTHO05D005468 4.7e-08 63.2 51 62.7
CDE09G0908 Ceratophyllum demersum HOM05D004229 ORTHO05D005468 4.7e-08 63.2 51 64.7
FAN10G1099 Fragaria x ananassa HOM05D004229 ORTHO05D005468 4.7e-08 63.2 42 73.8
PGSC0003DMG400023478 Solanum tuberosum HOM05D004229 ORTHO05D005468 4.7e-08 63.2 47 63.8
arahy.Tifrunner.gnm1.ann1.DJS8Z9 Arachis hypogaea HOM05D004229 ORTHO05D005468 6.1e-08 62.8 38 71.1
arahy.Tifrunner.gnm1.ann1.LC1BQN Arachis hypogaea HOM05D004229 ORTHO05D005468 6.1e-08 62.8 38 71.1
SHI08894 Sapria himalayana HOM05D004229 ORTHO05D005468 8.0e-08 62.4 51 66.7
Aa31sc141G10 Aethionema arabicum HOM05D004229 ORTHO05D005468 1.4e-07 61.6 51 62.7
Carub.0005s2206 Capsella rubella HOM05D004229 ORTHO05D005468 1.8e-07 61.2 41 68.3
arahy.Tifrunner.gnm1.ann1.I4EZ5E Arachis hypogaea HOM05D004229 ORTHO05D005468 2.3e-07 60.8 36 72.2
SEGI_01819 Sequoiadendron giganteum HOM05D004229 ORTHO05D025211 4.0e-07 60.1 69 47.8
Mapoly0054s0015 Marchantia polymorpha HOM05D004229 ORTHO05D005468 5.7e-06 56.2 50 56.0


User provided reference genes

Program Settings