Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C027435.2 Cucumis melo HOM05D004419 ORTHO05D005480 2.6e-28 127.9 58 100.0
MELO3C015209.2 Cucumis melo HOM05D004419 ORTHO05D005480 2.7e-25 117.9 57 91.2
CsaV3_1G042600 Cucumis sativus L. HOM05D004419 ORTHO05D005480 1.7e-24 115.2 57 91.2
MELO3C025411.2 Cucumis melo HOM05D004419 ORTHO05D005480 3.0e-24 114.4 57 89.5
ClCG03G013430 Citrullus lanatus HOM05D004419 ORTHO05D005480 1.5e-23 112.1 57 87.7
Sed0001509 Sechium edule HOM05D004419 ORTHO05D005480 2.1e-22 108.2 56 85.7
Dinv36300 Davidia involucrata HOM05D004419 ORTHO05D005480 1.5e-20 102.1 56 76.8
Cfa009704 Carpinus fangiana HOM05D004419 ORTHO05D005480 1.3e-19 99.0 56 73.2
CiPaw.13G165000 Carya illinoinensis HOM05D004419 ORTHO05D005480 1.3e-19 99.0 56 73.2
Haze_23052 Corylus avellana HOM05D004419 ORTHO05D005480 1.3e-19 99.0 56 73.2
Haze_23057 Corylus avellana HOM05D004419 ORTHO05D005480 1.3e-19 99.0 56 73.2
Potri.001G016200 Populus trichocarpa HOM05D004419 ORTHO05D005480 2.9e-19 97.8 56 75.0
PSO384G0662 Papaver somniferum HOM05D004419 ORTHO05D005480 3.7e-19 97.4 55 74.5
RcHm_v2.0_Chr5g0078291 Rosa chinensis HOM05D004419 ORTHO05D005480 6.4e-19 96.7 56 73.2
CSS0021936 Camellia sinensis var. sinensis HOM05D004419 ORTHO05D005480 8.3e-19 96.3 56 73.2
Actinidia39384 Actinidia chinensis HOM05D004419 ORTHO05D005480 1.1e-18 95.9 56 75.0
TAR623G0092 Trochodendron aralioides HOM05D004419 ORTHO05D005480 1.1e-18 95.9 56 71.4
Atru.chr3.2519_Atru.chr3.2520 Acer truncatum HOM05D004419 ORTHO05D005480 1.4e-18 95.5 56 73.2
vmacro12711 Vaccinium macrocarpon HOM05D004419 ORTHO05D005480 1.9e-18 95.1 56 71.4
RcHm_v2.0_Chr5g0078171 Rosa chinensis HOM05D004419 ORTHO05D005480 2.4e-18 94.7 56 71.4
Lalb_Chr19g0138231 Lupinus albus HOM05D004419 ORTHO05D005480 5.4e-18 93.6 55 74.5
Nn7g36075 Nelumbo nucifera HOM05D004419 ORTHO05D005480 5.4e-18 93.6 56 71.4
Hund22076 Selenicereus undatus HOM05D004419 ORTHO05D005480 5.4e-18 93.6 56 69.6
CAN.G388.54 Capsicum annuum HOM05D004419 ORTHO05D005480 7.0e-18 93.2 56 71.4
FvH4_3g43600 Fragaria vesca HOM05D004419 ORTHO05D005480 7.0e-18 93.2 56 69.6
FAN11G1953 Fragaria x ananassa HOM05D004419 ORTHO05D005480 7.0e-18 93.2 56 69.6
FAN21G0217 Fragaria x ananassa HOM05D004419 ORTHO05D005480 7.0e-18 93.2 56 69.6
Lalb_Chr01g0003291 Lupinus albus HOM05D004419 ORTHO05D005480 7.0e-18 93.2 56 71.4
GSVIVG01025322001 Vitis vinifera HOM05D004419 ORTHO05D005480 9.2e-18 92.8 56 67.9
Ah.04g161770 Amaranthus hybridus HOM05D004419 ORTHO05D005480 1.2e-17 92.4 56 67.9
DCAR_002041 Daucus carota HOM05D004419 ORTHO05D005480 1.2e-17 92.4 56 69.6
FAN25G0488 Fragaria x ananassa HOM05D004419 ORTHO05D005480 1.2e-17 92.4 56 69.6
Hma1.2p1_0143F.1_g064490 Hydrangea macrophylla HOM05D004419 ORTHO05D005480 1.2e-17 92.4 56 71.4
Duzib150G1622 Durio zibethinus HOM05D004419 ORTHO05D005480 1.6e-17 92.0 55 69.1
Duzib168G0032 Durio zibethinus HOM05D004419 ORTHO05D005480 1.6e-17 92.0 55 69.1
MBI01_g41296_MAGBIO Magnolia biondii HOM05D004419 ORTHO05D005480 1.6e-17 92.0 56 67.9
Eucgr.J00814 Eucalyptus grandis HOM05D004419 ORTHO05D005480 2.0e-17 91.7 56 69.6
Gohir.A06G108900 Gossypium hirsutum HOM05D004419 ORTHO05D005480 2.0e-17 91.7 54 68.5
Gorai.010G128800 Gossypium raimondii HOM05D004419 ORTHO05D005480 2.0e-17 91.7 54 68.5
Manes.14G013900 Manihot esculenta HOM05D004419 ORTHO05D005480 2.0e-17 91.7 55 72.7
QL01p006124 Quercus lobata HOM05D004419 ORTHO05D005480 2.0e-17 91.7 56 66.1
QL01p016023 Quercus lobata HOM05D004419 ORTHO05D005480 2.0e-17 91.7 56 66.1
Solyc01g006680.4 Solanum lycopersicum HOM05D004419 ORTHO05D005480 2.0e-17 91.7 56 67.9
Sopen01g002670 Solanum pennellii HOM05D004419 ORTHO05D005480 2.0e-17 91.7 56 67.9
Manes.06G168600 Manihot esculenta HOM05D004419 ORTHO05D005480 2.7e-17 91.3 55 70.9
Nitab4.5_0003250g0020 Nicotiana tabacum HOM05D004419 ORTHO05D005480 2.7e-17 91.3 56 69.6
MD03G1020700 Malus domestica HOM05D004419 ORTHO05D005480 3.5e-17 90.9 55 69.1
Nitab4.5_0000175g0140 Nicotiana tabacum HOM05D004419 ORTHO05D005480 3.5e-17 90.9 56 67.9
PGSC0003DMG400021346 Solanum tuberosum HOM05D004419 ORTHO05D005480 3.5e-17 90.9 56 67.9
Peaxi162Scf00559g00213 Petunia axillaris HOM05D004419 ORTHO05D005480 4.6e-17 90.5 56 67.9
THA.LOC104816908 Tarenaya hassleriana HOM05D004419 ORTHO05D005480 4.6e-17 90.5 55 69.1
TWI60G0085 Tripterygium wilfordii HOM05D004419 ORTHO05D005480 4.6e-17 90.5 56 71.4
Carub.0003s2077 Capsella rubella HOM05D004419 ORTHO05D005480 6.0e-17 90.1 55 67.3
FAN16G1269 Fragaria x ananassa HOM05D004419 ORTHO05D005480 6.0e-17 90.1 56 67.9
Prupe.6G015700 Prunus persica HOM05D004419 ORTHO05D005480 6.0e-17 90.1 54 70.4
Cpa.g.sc84.102 Carica papaya HOM05D004419 ORTHO05D005480 1.3e-16 89.0 56 66.1
Cc01_g04260 Coffea canephora HOM05D004419 ORTHO05D005480 1.3e-16 89.0 56 67.9
ECA233G0260 Erigeron canadensis HOM05D004419 ORTHO05D005480 1.3e-16 89.0 55 67.3
Migut.D00562 Erythranthe guttata HOM05D004419 ORTHO05D005480 1.3e-16 89.0 57 66.7
MBI01_g05106_MAGBIO Magnolia biondii HOM05D004419 ORTHO05D005480 1.3e-16 89.0 56 66.1
Thecc.09G224700 Theobroma cacao HOM05D004419 ORTHO05D005480 1.3e-16 89.0 55 67.3
Ciclev10015488m.g Citrus clementina HOM05D004419 ORTHO05D005480 1.7e-16 88.6 55 67.3
AL3G34730 Arabidopsis lyrata HOM05D004419 ORTHO05D005480 2.3e-16 88.2 55 65.5
BcaB06g26154 Brassica carinata HOM05D004419 ORTHO05D005480 2.3e-16 88.2 55 65.5
BcaC05g28277 Brassica carinata HOM05D004419 ORTHO05D005480 2.3e-16 88.2 55 65.5
BcaC05g28278 Brassica carinata HOM05D004419 ORTHO05D005480 2.3e-16 88.2 55 65.5
Sp3g18830 Schrenkiella parvula HOM05D004419 ORTHO05D005480 2.3e-16 88.2 55 65.5
arahy.Tifrunner.gnm1.ann1.LD2WL8 Arachis hypogaea HOM05D004419 ORTHO05D005480 3.0e-16 87.8 55 67.3
Ah.06g193530 Amaranthus hybridus HOM05D004419 ORTHO05D005480 3.9e-16 87.4 56 62.5
Aqoxy2G00106 Aquilegia oxysepala HOM05D004419 ORTHO05D005480 3.9e-16 87.4 56 62.5
Lj3g0003248 Lotus japonicus HOM05D004419 ORTHO05D005480 3.9e-16 87.4 55 65.5
PGR119G1205 Punica granatum HOM05D004419 ORTHO05D005480 3.9e-16 87.4 56 62.5
Aa31LG8G7630 Aethionema arabicum HOM05D004419 ORTHO05D005480 5.0e-16 87.0 55 65.5
AT3G20810 Arabidopsis thaliana HOM05D004419 ORTHO05D005480 5.0e-16 87.0 55 63.6
BcaC05g28276 Brassica carinata HOM05D004419 ORTHO05D005480 5.0e-16 87.0 55 63.6
A05p27970 Brassica napus HOM05D004419 ORTHO05D005480 5.0e-16 87.0 55 63.6
C05p43260 Brassica napus HOM05D004419 ORTHO05D005480 5.0e-16 87.0 55 63.6
BolC5t33056H Brassica oleracea HOM05D004419 ORTHO05D005480 5.0e-16 87.0 55 63.6
BraA05t21680Z Brassica rapa HOM05D004419 ORTHO05D005480 5.0e-16 87.0 55 63.6
Medtr4g066020 Medicago truncatula HOM05D004419 ORTHO05D005480 5.0e-16 87.0 55 65.5
HanXRQChr02g0056491 Helianthus annuus HOM05D004419 ORTHO05D005480 8.6e-16 86.3 55 63.6
ATR0605G084 Amborella trichopoda HOM05D004419 ORTHO05D005480 1.1e-15 85.9 56 60.7
Lsat_1_v5_gn_6_50061 Lactuca sativa HOM05D004419 ORTHO05D005480 1.1e-15 85.9 55 65.5
CANSAT54G1224 Cannabis sativa HOM05D004419 ORTHO05D005480 1.5e-15 85.5 54 64.8
Thhalv10021129m.g Eutrema salsugineum HOM05D004419 ORTHO05D005480 1.5e-15 85.5 55 63.6
Glyma.11G130600 Glycine max HOM05D004419 ORTHO05D005480 1.5e-15 85.5 55 67.3
SHI30509 Sapria himalayana HOM05D004419 ORTHO05D005480 1.5e-15 85.5 56 64.3
MSTRG.21407 Avicennia marina HOM05D004419 ORTHO05D005480 1.9e-15 85.1 56 62.5
Ca_20582_v3 Cicer arietinum L. HOM05D004419 ORTHO05D005480 1.9e-15 85.1 55 63.6
Phvul.011G056900 Phaseolus vulgaris HOM05D004419 ORTHO05D005480 1.9e-15 85.1 55 65.5
TPR.G13661 Trifolium pratense HOM05D004419 ORTHO05D005633 1.9e-15 85.1 55 63.6
Oeu024454.3 Olea europaea HOM05D004419 ORTHO05D005480 2.5e-15 84.7 56 60.7
Glyma.12G055000 Glycine max HOM05D004419 ORTHO05D005480 3.3e-15 84.3 55 65.5
Psat7g213880 Pisum sativum HOM05D004419 ORTHO05D005480 3.3e-15 84.3 55 63.6
Os09g0489200 Oryza sativa ssp. japonica HOM05D004419 ORTHO05D005480 7.3e-15 83.2 52 65.4
EL10Ac4g10313 Beta vulgaris HOM05D004419 ORTHO05D005480 1.6e-14 82.0 66 54.5
Os08g0508500 Oryza sativa ssp. japonica HOM05D004419 ORTHO05D005480 1.6e-14 82.0 54 61.1
Gohir.D06G112900 Gossypium hirsutum HOM05D004419 ORTHO05D005480 6.2e-14 80.1 73 50.7
Sc16g0011690 Simmondsia chinensis HOM05D004419 ORTHO05D005480 8.1e-14 79.7 56 60.7
HPP92_017970 Vanilla planifolia HOM05D004419 ORTHO05D005480 3.1e-13 77.8 50 60.0
Mapoly0036s0149 Marchantia polymorpha HOM05D004419 ORTHO05D005480 4.4e-12 73.9 56 48.2
SMO364G0845 Selaginella moellendorffii HOM05D004419 ORTHO05D005480 7.5e-12 73.2 52 57.7
Pp3c17_10850 Physcomitrium patens HOM05D004419 ORTHO05D005480 1.1e-10 69.3 49 57.1
MD11G1022000 Malus domestica HOM05D004419 ORTHO05D005480 2.4e-10 68.2 42 71.4
MD11G1022300 Malus domestica HOM05D004419 ORTHO05D005480 3.2e-10 67.8 53 56.6
Sabra01G0011400 Salix brachista HOM05D004419 ORTHO05D005480 5.4e-10 67.0 119 34.5
AagrBONN_evm.TU.Sc2ySwM_117.3437 Anthoceros agrestis HOM05D004419 ORTHO05D005480 1.2e-09 65.9 50 50.0
Cre11.g467768 Chlamydomonas reinhardtii HOM05D004419 ORTHO05D005480 3.5e-09 64.3 51 49.0
CBR_g68529 Chara braunii HOM05D004419 ORTHO05D005480 8.6e-08 59.7 49 44.9
arahy.Tifrunner.gnm1.ann1.6DX332 Arachis hypogaea HOM05D004419 ORTHO05D005480 2.1e-06 55.1 99 34.3


User provided reference genes

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