Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C026793.2 Cucumis melo HOM05D003620 ORTHO05D004261 4.2e-32 140.6 64 100.0
MELO3C018674.2 Cucumis melo HOM05D003620 ORTHO05D004261 1.0e-22 109.4 56 87.5
CsaV3_7G006180 Cucumis sativus L. HOM05D003620 ORTHO05D004261 1.0e-22 109.4 56 87.5
Sed0005951 Sechium edule HOM05D003620 ORTHO05D004261 1.0e-22 109.4 56 87.5
ClCG09G013430 Citrullus lanatus HOM05D003620 ORTHO05D004261 1.4e-22 109.0 56 85.7
ECA240G1941 Erigeron canadensis HOM05D003620 ORTHO05D004261 5.7e-21 103.6 56 82.1
Lsat_1_v5_gn_9_117920 Lactuca sativa HOM05D003620 ORTHO05D004261 5.7e-21 103.6 56 82.1
Lsat_1_v5_gn_7_80501 Lactuca sativa HOM05D003620 ORTHO05D004261 9.8e-21 102.8 56 80.4
Phvul.006G208800 Phaseolus vulgaris HOM05D003620 ORTHO05D004261 1.3e-20 102.4 56 82.1
Dinv24230 Davidia involucrata HOM05D003620 ORTHO05D004261 2.9e-20 101.3 56 80.4
Glyma.08G181200 Glycine max HOM05D003620 ORTHO05D004261 2.9e-20 101.3 56 80.4
VMungo0540G0770 Vigna mungo HOM05D003620 ORTHO05D004261 2.9e-20 101.3 56 80.4
ECA236G2397 Erigeron canadensis HOM05D003620 ORTHO05D004261 6.4e-20 100.1 56 80.4
Peaxi162Scf00001g00523 Petunia axillaris HOM05D003620 ORTHO05D004261 6.4e-20 100.1 56 76.8
HanXRQChr03g0065791 Helianthus annuus HOM05D003620 ORTHO05D004261 8.3e-20 99.8 56 78.6
HanXRQChr11g0337651 Helianthus annuus HOM05D003620 ORTHO05D004261 8.3e-20 99.8 56 78.6
Actinidia00242 Actinidia chinensis HOM05D003620 ORTHO05D004261 1.1e-19 99.4 56 78.6
CiPaw.05G039200 Carya illinoinensis HOM05D003620 ORTHO05D004261 1.1e-19 99.4 56 78.6
Duzib132G0147 Durio zibethinus HOM05D003620 ORTHO05D004261 1.1e-19 99.4 56 78.6
Lj6g0005534 Lotus japonicus HOM05D003620 ORTHO05D004261 1.1e-19 99.4 56 78.6
QL02p098754 Quercus lobata HOM05D003620 ORTHO05D004261 1.1e-19 99.4 56 78.6
THA.LOC104811774 Tarenaya hassleriana HOM05D003620 ORTHO05D004261 1.1e-19 99.4 56 78.6
CSS0011415 Camellia sinensis var. sinensis HOM05D003620 ORTHO05D004261 1.4e-19 99.0 56 76.8
CSS0027167 Camellia sinensis var. sinensis HOM05D003620 ORTHO05D004261 1.4e-19 99.0 56 76.8
Lj5C243T9 Lonicera japonica HOM05D003620 ORTHO05D004261 1.4e-19 99.0 56 76.8
Oeu037206.2 Olea europaea HOM05D003620 ORTHO05D004261 1.8e-19 98.6 56 76.8
CDE08G1148 Ceratophyllum demersum HOM05D003620 ORTHO05D004261 2.4e-19 98.2 56 76.8
MD08G1222700 Malus domestica HOM05D003620 ORTHO05D004261 2.4e-19 98.2 56 76.8
Oeu047368.1 Olea europaea HOM05D003620 ORTHO05D004261 2.4e-19 98.2 56 75.0
CAN.G523.97 Capsicum annuum HOM05D003620 ORTHO05D004261 3.2e-19 97.8 56 75.0
Lalb_Chr18g0060681 Lupinus albus HOM05D003620 ORTHO05D004261 3.2e-19 97.8 56 76.8
Nitab4.5_0007987g0020 Nicotiana tabacum HOM05D003620 ORTHO05D004261 3.2e-19 97.8 56 75.0
THA.LOC104817775 Tarenaya hassleriana HOM05D003620 ORTHO05D004261 3.2e-19 97.8 56 76.8
GSVIVG01029732001 Vitis vinifera HOM05D003620 ORTHO05D004261 3.2e-19 97.8 56 76.8
MSTRG.16561 Avicennia marina HOM05D003620 ORTHO05D004261 4.1e-19 97.4 56 76.8
Prupe.1G560600 Prunus persica HOM05D003620 ORTHO05D004261 4.1e-19 97.4 56 76.8
Rhsim11G0134200 Rhododendron simsii HOM05D003620 ORTHO05D004261 4.1e-19 97.4 55 78.2
Nn1g06259 Nelumbo nucifera HOM05D003620 ORTHO05D004261 5.4e-19 97.1 56 76.8
SalBow5G2235 Salvia bowleyana HOM05D003620 ORTHO05D004261 5.4e-19 97.1 55 76.4
SalBow5G2754 Salvia bowleyana HOM05D003620 ORTHO05D004261 5.4e-19 97.1 55 76.4
vmacro01806 Vaccinium macrocarpon HOM05D003620 ORTHO05D004261 5.4e-19 97.1 56 76.8
COL.COLO4_20874 Corchorus olitorius HOM05D003620 ORTHO05D004261 7.0e-19 96.7 56 75.0
RcHm_v2.0_Chr7g0225351 Rosa chinensis HOM05D003620 ORTHO05D004261 7.0e-19 96.7 56 78.6
CANSAT11G1106 Cannabis sativa HOM05D003620 ORTHO05D004261 9.2e-19 96.3 56 76.8
CsaV3_6G003040 Cucumis sativus L. HOM05D003620 ORTHO05D004261 9.2e-19 96.3 56 82.1
PGR042G1212 Punica granatum HOM05D003620 ORTHO05D004261 9.2e-19 96.3 56 73.2
Solyc01g104880.3 Solanum lycopersicum HOM05D003620 ORTHO05D004261 9.2e-19 96.3 56 73.2
Sopen01g047400 Solanum pennellii HOM05D003620 ORTHO05D004261 9.2e-19 96.3 56 73.2
Psat1g218440 Pisum sativum HOM05D003620 ORTHO05D004261 1.2e-18 95.9 56 76.8
Sabra01G0139300 Salix brachista HOM05D003620 ORTHO05D004261 1.2e-18 95.9 56 75.0
Thecc.02G144000 Theobroma cacao HOM05D003620 ORTHO05D004261 1.2e-18 95.9 56 78.6
TPR.G19731 Trifolium pratense HOM05D003620 ORTHO05D004261 1.2e-18 95.9 56 76.8
Actinidia38967 Actinidia chinensis HOM05D003620 ORTHO05D004261 1.6e-18 95.5 56 76.8
Cfa005564 Carpinus fangiana HOM05D003620 ORTHO05D004261 1.6e-18 95.5 56 76.8
Ca_00113_v3 Cicer arietinum L. HOM05D003620 ORTHO05D004261 1.6e-18 95.5 56 75.0
Haze_10770 Corylus avellana HOM05D003620 ORTHO05D004261 1.6e-18 95.5 56 76.8
FvH4_5g30530 Fragaria vesca HOM05D003620 ORTHO05D004261 1.6e-18 95.5 56 76.8
FAN08G3618 Fragaria x ananassa HOM05D003620 ORTHO05D004261 1.6e-18 95.5 56 76.8
FAN13G1243 Fragaria x ananassa HOM05D003620 ORTHO05D004261 1.6e-18 95.5 56 76.8
FAN18G1779 Fragaria x ananassa HOM05D003620 ORTHO05D004261 1.6e-18 95.5 56 76.8
Sc09g0004430 Simmondsia chinensis HOM05D003620 ORTHO05D004261 1.6e-18 95.5 56 75.0
DCAR_001444 Daucus carota HOM05D003620 ORTHO05D004261 2.0e-18 95.1 56 75.0
Eucgr.G00656 Eucalyptus grandis HOM05D003620 ORTHO05D004261 2.0e-18 95.1 56 73.2
FAN04G1518 Fragaria x ananassa HOM05D003620 ORTHO05D004261 2.0e-18 95.1 56 75.0
TWI14G0354 Tripterygium wilfordii HOM05D003620 ORTHO05D004261 2.0e-18 95.1 56 75.0
Os01g0959800 Oryza sativa ssp. japonica HOM05D003620 ORTHO05D004261 2.7e-18 94.7 56 75.0
PSO541G1613 Papaver somniferum HOM05D003620 ORTHO05D004261 2.7e-18 94.7 56 76.8
TAR625G1066 Trochodendron aralioides HOM05D003620 ORTHO05D004261 2.7e-18 94.7 56 73.2
Potri.001G172400 Populus trichocarpa HOM05D003620 ORTHO05D004261 3.5e-18 94.4 56 75.0
HPP92_019398 Vanilla planifolia HOM05D003620 ORTHO05D004261 3.5e-18 94.4 56 76.8
AT5G57190 Arabidopsis thaliana HOM05D003620 ORTHO05D004261 4.6e-18 94.0 56 75.0
Cpa.g.sc845.5 Carica papaya HOM05D003620 ORTHO05D004261 4.6e-18 94.0 56 73.2
Cc02_g21940 Coffea canephora HOM05D003620 ORTHO05D004261 4.6e-18 94.0 56 75.0
MBI06_g29671_MAGBIO Magnolia biondii HOM05D003620 ORTHO05D004261 4.6e-18 94.0 56 75.0
BcaNung03773 Brassica carinata HOM05D003620 ORTHO05D004261 5.9e-18 93.6 56 73.2
Thhalv10024661m.g Eutrema salsugineum HOM05D003620 ORTHO05D004261 5.9e-18 93.6 56 73.2
Potri.003G061700 Populus trichocarpa HOM05D003620 ORTHO05D004261 5.9e-18 93.6 56 73.2
Sabra03G0035800 Salix brachista HOM05D003620 ORTHO05D004261 5.9e-18 93.6 56 73.2
Atru.chr6.881 Acer truncatum HOM05D003620 ORTHO05D004261 1.0e-17 92.8 56 73.2
CANSAT11G0919 Cannabis sativa HOM05D003620 ORTHO05D004261 1.0e-17 92.8 56 73.2
CBR_g4358 Chara braunii HOM05D003620 ORTHO05D004261 1.0e-17 92.8 56 73.2
PSO675G2802 Papaver somniferum HOM05D003620 ORTHO05D004261 1.0e-17 92.8 56 75.0
ATR1136G049 Amborella trichopoda HOM05D003620 ORTHO05D004261 1.3e-17 92.4 55 76.4
BcaC04g19991 Brassica carinata HOM05D003620 ORTHO05D004261 1.3e-17 92.4 56 73.2
BcaC09g50725 Brassica carinata HOM05D003620 ORTHO05D004261 1.3e-17 92.4 56 71.4
A01p17230 Brassica napus HOM05D003620 ORTHO05D004261 1.3e-17 92.4 56 71.4
A10p14580 Brassica napus HOM05D003620 ORTHO05D004261 1.3e-17 92.4 56 73.2
C01p21590 Brassica napus HOM05D003620 ORTHO05D004261 1.3e-17 92.4 56 71.4
C09p49020 Brassica napus HOM05D003620 ORTHO05D004261 1.3e-17 92.4 56 73.2
BolC1t02078H Brassica oleracea HOM05D003620 ORTHO05D004261 1.3e-17 92.4 56 71.4
BolC9t57753H Brassica oleracea HOM05D003620 ORTHO05D004261 1.3e-17 92.4 56 73.2
BraA01t01679Z Brassica rapa HOM05D003620 ORTHO05D004261 1.3e-17 92.4 56 71.4
BraA10t43545Z Brassica rapa HOM05D003620 ORTHO05D004261 1.3e-17 92.4 56 73.2
CsaV3_3G020620 Cucumis sativus L. HOM05D003620 ORTHO05D004261 1.3e-17 92.4 56 75.0
Gohir.A12G013800 Gossypium hirsutum HOM05D003620 ORTHO05D004261 1.3e-17 92.4 56 73.2
Gohir.D12G014500 Gossypium hirsutum HOM05D003620 ORTHO05D004261 1.3e-17 92.4 56 73.2
Gorai.008G014600 Gossypium raimondii HOM05D003620 ORTHO05D004261 1.3e-17 92.4 56 73.2
Sp6g18920 Schrenkiella parvula HOM05D003620 ORTHO05D004261 1.3e-17 92.4 56 73.2
AL161U10010 Arabidopsis lyrata HOM05D003620 ORTHO05D004261 1.7e-17 92.0 56 73.2
AL8G33150 Arabidopsis lyrata HOM05D003620 ORTHO05D004261 1.7e-17 92.0 56 73.2
Thhalv10012950m.g Eutrema salsugineum HOM05D003620 ORTHO05D004261 1.7e-17 92.0 56 73.2
Migut.B00643 Erythranthe guttata HOM05D003620 ORTHO05D004261 2.3e-17 91.7 56 71.4
Manes.07G024800 Manihot esculenta HOM05D003620 ORTHO05D004261 3.0e-17 91.3 56 71.4
Aa31LG3G13090 Aethionema arabicum HOM05D003620 ORTHO05D004261 3.9e-17 90.9 56 71.4
Aqoxy6G00354 Aquilegia oxysepala HOM05D003620 ORTHO05D004261 3.9e-17 90.9 56 75.0
BcaB08g36077 Brassica carinata HOM05D003620 ORTHO05D004261 3.9e-17 90.9 56 71.4
CARHR233480 Cardamine hirsuta HOM05D003620 ORTHO05D004261 3.9e-17 90.9 56 73.2
CARHR270980 Cardamine hirsuta HOM05D003620 ORTHO05D004261 3.9e-17 90.9 56 71.4
Aa31LG3G330 Aethionema arabicum HOM05D003620 ORTHO05D004261 5.0e-17 90.5 56 71.4
Manes.10G117200 Manihot esculenta HOM05D003620 ORTHO05D004261 5.0e-17 90.5 56 73.2
Carub.0007s1498 Capsella rubella HOM05D003620 ORTHO05D004261 6.6e-17 90.1 56 69.6
arahy.Tifrunner.gnm1.ann1.F2S38R Arachis hypogaea HOM05D003620 ORTHO05D004261 8.6e-17 89.7 56 71.4
Carub.0008s1770 Capsella rubella HOM05D003620 ORTHO05D004261 8.6e-17 89.7 56 71.4
Medtr2g008190 Medicago truncatula HOM05D003620 ORTHO05D004261 1.1e-16 89.4 56 71.4
AL7G27030 Arabidopsis lyrata HOM05D003620 ORTHO05D004261 1.9e-16 88.6 56 69.6
Mapoly0064s0044 Marchantia polymorpha HOM05D003620 ORTHO05D004261 1.9e-16 88.6 56 69.6
Nitab4.5_0008610g0050 Nicotiana tabacum HOM05D003620 ORTHO05D004261 1.9e-16 88.6 49 77.6
AT4G25970 Arabidopsis thaliana HOM05D003620 ORTHO05D004261 2.5e-16 88.2 56 67.9
AagrBONN_evm.TU.Sc2ySwM_228.3970 Anthoceros agrestis HOM05D003620 ORTHO05D004261 3.3e-16 87.8 55 72.7
AUR62004784 Chenopodium quinoa HOM05D003620 ORTHO05D004261 1.2e-15 85.9 61 65.6
SEGI_27738 Sequoiadendron giganteum HOM05D003620 ORTHO05D004261 1.2e-15 85.9 56 67.9
BcaC04g22352 Brassica carinata HOM05D003620 ORTHO05D004261 2.1e-15 85.1 56 64.3
Lj6g0009012 Lotus japonicus HOM05D003620 ORTHO05D004261 4.7e-15 84.0 57 70.2
Pp3c15_7420 Physcomitrium patens HOM05D003620 ORTHO05D004261 6.2e-15 83.6 56 62.5
MELO3C003259.2 Cucumis melo HOM05D003620 ORTHO05D004261 8.0e-15 83.2 56 71.4
SMO244G0007 Selaginella moellendorffii HOM05D003620 ORTHO05D004261 8.0e-15 83.2 55 67.3
C09p20220 Brassica napus HOM05D003620 ORTHO05D004261 3.1e-14 81.3 56 62.5
BolC9t54929H Brassica oleracea HOM05D003620 ORTHO05D004261 3.1e-14 81.3 56 62.5
EL10Ac4g08941 Beta vulgaris HOM05D003620 ORTHO05D004261 8.9e-14 79.7 56 69.6
Hund22190 Selenicereus undatus HOM05D003620 ORTHO05D004261 3.5e-10 67.8 74 51.4
C07p07780 Brassica napus HOM05D003620 ORTHO05D004261 2.3e-09 65.1 46 60.9
BolC7t41196H Brassica oleracea HOM05D003620 ORTHO05D004261 2.3e-09 65.1 46 60.9
Ciclev10000710m.g Citrus clementina HOM05D003620 ORTHO05D004261 3.9e-09 64.3 34 76.5
Zm00001eb362570 Zea mays HOM05D003620 ORTHO05D004261 5.6e-08 60.5 34 73.5
GSVIVG01038340001 Vitis vinifera HOM05D003620 ORTHO05D004261 7.3e-08 60.1 39 61.5


User provided reference genes

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