Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C026387.2 Cucumis melo HOM05D006642 ORTHO05D008856 1.1e-155 554.3 557 100.0
CsaV3_4G032160 Cucumis sativus L. HOM05D006642 ORTHO05D008856 4.4e-125 452.6 561 91.1
ClCG11G016650 Citrullus lanatus HOM05D006642 ORTHO05D008856 2.1e-119 433.7 558 89.6
Sed0004539 Sechium edule HOM05D006642 ORTHO05D008856 3.3e-112 409.8 561 83.1
CANSAT64G1219 Cannabis sativa HOM05D006642 ORTHO05D008856 2.2e-76 290.8 283 74.9
RcHm_v2.0_Chr2g0152561 Rosa chinensis HOM05D006642 ORTHO05D008856 2.7e-74 283.9 283 79.2
arahy.Tifrunner.gnm1.ann1.T7AVMG Arachis hypogaea HOM05D006642 ORTHO05D008856 1.3e-73 281.6 283 72.8
FAN02G0564 Fragaria x ananassa HOM05D006642 ORTHO05D008856 1.8e-73 281.2 283 79.9
Ciclev10014674m.g Citrus clementina HOM05D006642 ORTHO05D008856 3.0e-73 280.4 283 72.8
TWI23G0590 Tripterygium wilfordii HOM05D006642 ORTHO05D008856 3.0e-73 280.4 283 72.8
FAN05G5081 Fragaria x ananassa HOM05D006642 ORTHO05D008856 5.1e-73 279.6 283 79.9
CSS0001521 Camellia sinensis var. sinensis HOM05D006642 ORTHO05D008856 6.7e-73 279.3 283 72.1
CSS0049788 Camellia sinensis var. sinensis HOM05D006642 ORTHO05D008856 6.7e-73 279.3 283 72.1
TAR624G0481 Trochodendron aralioides HOM05D006642 ORTHO05D008856 8.7e-73 278.9 283 71.7
FAN14G1916 Fragaria x ananassa HOM05D006642 ORTHO05D008856 1.1e-72 278.5 283 79.9
MD09G1145700 Malus domestica HOM05D006642 ORTHO05D008856 1.1e-72 278.5 533 74.7
FvH4_6g38970 Fragaria vesca HOM05D006642 ORTHO05D008856 1.5e-72 278.1 283 79.9
Cfa023538 Carpinus fangiana HOM05D006642 ORTHO05D008856 3.3e-72 276.9 283 72.8
Nn4g26621 Nelumbo nucifera HOM05D006642 ORTHO05D008856 4.3e-72 276.6 282 70.6
PSO675G5462 Papaver somniferum HOM05D006642 ORTHO05D008856 5.6e-72 276.2 282 77.0
Potri.001G220300 Populus trichocarpa HOM05D006642 ORTHO05D008856 5.6e-72 276.2 283 72.4
Duzib147G0394 Durio zibethinus HOM05D006642 ORTHO05D008856 7.4e-72 275.8 284 64.8
Glyma.20G103800 Glycine max HOM05D006642 ORTHO05D008856 7.4e-72 275.8 283 72.1
Aqoxy5G04293 Aquilegia oxysepala HOM05D006642 ORTHO05D008856 9.6e-72 275.4 283 71.0
Manes.09G006600 Manihot esculenta HOM05D006642 ORTHO05D008856 1.3e-71 275.0 283 71.4
Glyma.10G285200 Glycine max HOM05D006642 ORTHO05D008856 1.6e-71 274.6 283 71.4
Nitab4.5_0001843g0110 Nicotiana tabacum HOM05D006642 ORTHO05D008856 2.8e-71 273.9 283 70.0
Prupe.3G180100 Prunus persica HOM05D006642 ORTHO05D008856 2.8e-71 273.9 283 72.8
Thecc.01G164600 Theobroma cacao HOM05D006642 ORTHO05D008856 2.8e-71 273.9 283 71.0
Hma1.2p1_0073F.1_g038540 Hydrangea macrophylla HOM05D006642 ORTHO05D008856 4.8e-71 273.1 283 71.4
PSO541G5267 Papaver somniferum HOM05D006642 ORTHO05D008856 4.8e-71 273.1 281 77.2
Nitab4.5_0007665g0020 Nicotiana tabacum HOM05D006642 ORTHO05D008856 1.1e-70 271.9 283 69.6
PGR142G3441 Punica granatum HOM05D006642 ORTHO05D008856 1.1e-70 271.9 283 71.4
COL.COLO4_29911 Corchorus olitorius HOM05D006642 ORTHO05D008856 1.8e-70 271.2 283 69.6
Phvul.007G015300 Phaseolus vulgaris HOM05D006642 ORTHO05D008856 1.8e-70 271.2 283 70.7
Sabra16G0124100 Salix brachista HOM05D006642 ORTHO05D008856 1.8e-70 271.2 283 71.4
Gohir.A05G380400 Gossypium hirsutum HOM05D006642 ORTHO05D008856 3.1e-70 270.4 282 72.0
VMungo0720G2195 Vigna mungo HOM05D000164 ORTHO05D000096 3.1e-70 270.4 283 71.0
Cc05_g00360 Coffea canephora HOM05D006642 ORTHO05D008856 4.0e-70 270.0 283 69.3
Atru.chr6.2750 Acer truncatum HOM05D006642 ORTHO05D008856 5.3e-70 269.6 283 71.0
Gorai.012G039700 Gossypium raimondii HOM05D006642 ORTHO05D008856 9.0e-70 268.9 282 71.3
Gohir.D04G035200 Gossypium hirsutum HOM05D006642 ORTHO05D008856 1.5e-69 268.1 282 71.3
Ca_11227_v3 Cicer arietinum L. HOM05D006642 ORTHO05D008856 2.0e-69 267.7 283 71.0
MSTRG.6613 Avicennia marina HOM05D006642 ORTHO05D008856 4.5e-69 266.5 283 69.6
Oeu051395.1 Olea europaea HOM05D006642 ORTHO05D008856 7.6e-69 265.8 283 69.6
Os08g0191900 Oryza sativa ssp. japonica HOM05D006642 ORTHO05D008856 9.9e-69 265.4 301 65.4
MBI02_g40097_MAGBIO Magnolia biondii HOM05D006642 ORTHO05D008856 1.3e-68 265.0 282 68.1
GSVIVG01020809001 Vitis vinifera HOM05D006642 ORTHO05D008856 1.3e-68 265.0 283 69.6
Sopen07g023170 Solanum pennellii HOM05D006642 ORTHO05D008856 2.2e-68 264.2 320 62.2
PGSC0003DMG400015924 Solanum tuberosum HOM05D006642 ORTHO05D008856 2.2e-68 264.2 320 62.2
Solyc07g043600.4 Solanum lycopersicum HOM05D006642 ORTHO05D008856 2.9e-68 263.8 325 62.5
vmacro19989 Vaccinium macrocarpon HOM05D006642 ORTHO05D008856 8.4e-68 262.3 300 66.7
DCAR_023000 Daucus carota HOM05D006642 ORTHO05D008856 1.1e-67 261.9 283 68.9
Medtr1g114300 Medicago truncatula HOM05D006642 ORTHO05D008856 1.1e-67 261.9 283 69.6
CDE05G1065 Ceratophyllum demersum HOM05D006642 ORTHO05D008856 1.4e-67 261.5 284 69.4
Eucgr.K01239 Eucalyptus grandis HOM05D006642 ORTHO05D008856 1.4e-67 261.5 283 68.2
Lj5g0013784 Lotus japonicus HOM05D006642 ORTHO05D008856 3.2e-67 260.4 283 68.6
HPP92_011054 Vanilla planifolia HOM05D006642 ORTHO05D008856 3.2e-67 260.4 283 67.1
CAN.G819.5 Capsicum annuum HOM05D006642 ORTHO05D008856 4.2e-67 260.0 283 67.8
HanXRQChr01g0029361 Helianthus annuus HOM05D006642 ORTHO05D008856 4.2e-67 260.0 283 68.2
Lalb_Chr06g0163881 Lupinus albus HOM05D006642 ORTHO05D008856 4.2e-67 260.0 283 68.6
Actinidia39996 Actinidia chinensis HOM05D006642 ORTHO05D008856 5.5e-67 259.6 283 67.8
ATR1098G151 Amborella trichopoda HOM05D006642 ORTHO05D008856 5.5e-67 259.6 283 66.8
ECA248G0755 Erigeron canadensis HOM05D006642 ORTHO05D008856 1.6e-66 258.1 283 67.8
Dinv09723 Davidia involucrata HOM05D006642 ORTHO05D008856 2.1e-66 257.7 283 68.6
unitig_899.g15288 Utricularia gibba HOM05D006642 ORTHO05D008856 2.1e-66 257.7 283 67.8
Thhalv10005856m.g Eutrema salsugineum HOM05D006642 ORTHO05D008856 2.7e-66 257.3 284 68.7
BcaC07g40235 Brassica carinata HOM05D006642 ORTHO05D008856 4.6e-66 256.5 284 75.7
BcaC07g40308 Brassica carinata HOM05D006642 ORTHO05D008856 4.6e-66 256.5 284 76.1
C08p34230 Brassica napus HOM05D006642 ORTHO05D008856 4.6e-66 256.5 284 76.1
BolC8t51020H Brassica oleracea HOM05D006642 ORTHO05D008856 4.6e-66 256.5 284 76.1
Carub.0005s2580 Capsella rubella HOM05D006642 ORTHO05D008856 7.9e-66 255.8 284 68.0
Lsat_1_v5_gn_1_49160 Lactuca sativa HOM05D006642 ORTHO05D008856 7.9e-66 255.8 283 61.1
Sp5g03940 Schrenkiella parvula HOM05D006642 ORTHO05D008856 7.9e-66 255.8 284 68.3
Psat6g233520 Pisum sativum HOM05D006642 ORTHO05D008856 5.1e-65 253.1 283 67.5
QL02p091883 Quercus lobata HOM05D006642 ORTHO05D008856 5.1e-65 253.1 516 78.3
Sc14g0005210 Simmondsia chinensis HOM05D006642 ORTHO05D008856 5.1e-65 253.1 283 67.1
A09p51470 Brassica napus HOM05D006642 ORTHO05D008856 6.7e-65 252.7 284 75.4
QL93p2017_0027 Quercus lobata HOM05D006642 ORTHO05D008856 1.1e-64 251.9 516 78.3
THA.LOC104802288 Tarenaya hassleriana HOM05D006642 ORTHO05D008856 1.1e-64 251.9 284 68.3
Zm00001eb413390 Zea mays HOM05D006642 ORTHO05D008856 1.5e-64 251.5 301 62.1
CARHR169450 Cardamine hirsuta HOM05D006642 ORTHO05D008856 2.5e-64 250.8 284 67.3
AT3G59040 Arabidopsis thaliana HOM05D006642 ORTHO05D008856 1.3e-63 248.4 284 66.5
AUR62002293 Chenopodium quinoa HOM05D006642 ORTHO05D008856 1.6e-63 248.1 293 65.5
TPR.G4069 Trifolium pratense HOM05D006642 ORTHO05D008856 1.6e-63 248.1 283 66.4
Rhsim05G0172300 Rhododendron simsii HOM05D006642 ORTHO05D008856 2.8e-63 247.3 300 72.0
SGA_v2.0_scaffold73G24452 Striga asiatica HOM05D006642 ORTHO05D008856 2.8e-63 247.3 296 64.2
Aa31LG10G13530 Aethionema arabicum HOM05D006642 ORTHO05D008856 1.4e-62 245.0 284 66.2
Ah.07g198470 Amaranthus hybridus HOM05D006642 ORTHO05D008856 4.0e-62 243.4 283 49.1
Ah.07g201920 Amaranthus hybridus HOM05D006642 ORTHO05D008856 9.0e-62 242.3 283 66.1
BraA09t40583Z Brassica rapa HOM05D006642 ORTHO05D008856 1.5e-61 241.5 284 73.6
AUR62015397 Chenopodium quinoa HOM05D006642 ORTHO05D008856 2.0e-61 241.1 325 45.8
EL10Ac8g19571 Beta vulgaris HOM05D006642 ORTHO05D008856 3.2e-59 233.8 298 62.8
Hund08483 Selenicereus undatus HOM05D006642 ORTHO05D008856 1.2e-58 231.9 283 65.7
Migut.M00108 Erythranthe guttata HOM05D006642 ORTHO05D008856 7.9e-58 229.2 320 43.4
MD17G1132200 Malus domestica HOM05D006642 ORTHO05D008856 4.3e-56 223.4 284 59.9
Cpa.g.sc50.124 Carica papaya HOM05D006642 ORTHO05D008856 7.2e-51 206.1 553 62.7
Haze_13626 Corylus avellana HOM05D006642 ORTHO05D008856 6.1e-50 203.0 446 79.4
Nn4g26620 Nelumbo nucifera HOM05D006642 ORTHO05D008856 2.1e-42 177.9 129 66.7
Lj1A585G41 Lonicera japonica HOM05D006642 ORTHO05D008856 8.8e-41 172.6 142 62.0
AL5G40920 Arabidopsis lyrata HOM05D006642 ORTHO05D008856 1.1e-38 165.6 196 71.9
HPP92_011074 Vanilla planifolia HOM05D006642 ORTHO05D008856 3.8e-36 157.1 127 60.6
EL10Ac5g11659 Beta vulgaris HOM05D006642 ORTHO05D008856 1.1e-35 155.6 129 62.0
CiPaw.03G197600 Carya illinoinensis HOM05D006642 ORTHO05D008856 6.5e-28 129.8 104 64.4
EL10Ac5g11660 Beta vulgaris HOM05D006642 ORTHO05D008856 1.3e-23 115.5 104 58.7
Pp3c26_11100 Physcomitrium patens HOM05D006642 ORTHO05D008856 1.3e-23 115.5 263 46.8
Mapoly0047s0104 Marchantia polymorpha HOM05D006642 ORTHO05D008856 1.0e-17 95.9 262 43.1
FAN09G4833 Fragaria x ananassa HOM05D006642 ORTHO05D008856 3.0e-17 94.4 59 78.0
BcaC08g44955 Brassica carinata HOM05D006642 ORTHO05D008856 3.4e-16 90.9 82 58.5
SMO259G0047 Selaginella moellendorffii HOM05D006642 ORTHO05D008856 1.7e-15 88.6 266 41.0
BcaB02g07488 Brassica carinata HOM05D006642 ORTHO05D008856 2.2e-15 88.2 63 69.8
C06p25860 Brassica napus HOM05D000461 ORTHO05D001840 3.1e-14 84.3 62 66.1
BolC6t37747H Brassica oleracea HOM05D006642 ORTHO05D032904 3.1e-14 84.3 62 66.1
BcaB02g07487 Brassica carinata HOM05D000461 ORTHO05D001840 6.5e-12 76.6 78 53.8
BcaC08g44954 Brassica carinata HOM05D006642 ORTHO05D032904 2.6e-08 64.7 45 71.1


User provided reference genes

Program Settings