Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C025450.2 Cucumis melo HOM05D006356 ORTHO05D007903 0.0e+00 2619.3 1317 100.0
ClCG09G020060 Citrullus lanatus HOM05D006356 ORTHO05D007903 0.0e+00 2416.3 1316 92.1
CsaV3_5G026400 Cucumis sativus L. HOM05D006356 ORTHO05D007903 0.0e+00 2110.1 1109 95.5
Sed0005812 Sechium edule HOM05D006356 ORTHO05D007903 0.0e+00 1851.3 1090 85.4
Haze_17035 Corylus avellana HOM05D006356 ORTHO05D007903 0.0e+00 1785.0 1328 67.2
QL08p059009 Quercus lobata HOM05D006356 ORTHO05D007903 0.0e+00 1780.4 1322 67.7
Cfa001508 Carpinus fangiana HOM05D006356 ORTHO05D007903 0.0e+00 1776.9 1328 66.9
Potri.010G208400 Populus trichocarpa HOM05D006356 ORTHO05D007903 0.0e+00 1750.3 1326 66.1
CANSAT56G2020 Cannabis sativa HOM05D006356 ORTHO05D007903 0.0e+00 1739.9 1327 65.2
Prupe.2G231100 Prunus persica HOM05D006356 ORTHO05D007903 0.0e+00 1736.5 1319 66.9
Sabra08G0037700 Salix brachista HOM05D006356 ORTHO05D007903 0.0e+00 1730.3 1325 65.6
Potri.008G052400 Populus trichocarpa HOM05D006356 ORTHO05D007903 0.0e+00 1725.7 1324 65.3
FAN06G1346 Fragaria x ananassa HOM05D006356 ORTHO05D007903 0.0e+00 1720.7 1324 65.6
FAN01G2014 Fragaria x ananassa HOM05D006356 ORTHO05D007903 0.0e+00 1719.9 1324 65.6
TWI38G0752 Tripterygium wilfordii HOM05D006356 ORTHO05D007903 0.0e+00 1716.4 1323 65.2
FvH4_7g21920 Fragaria vesca HOM05D006356 ORTHO05D007903 0.0e+00 1716.0 1324 65.4
CSS0015977 Camellia sinensis var. sinensis HOM05D006356 ORTHO05D007903 0.0e+00 1715.3 1331 64.8
Thecc.10G046600 Theobroma cacao HOM05D006356 ORTHO05D007903 0.0e+00 1715.3 1329 66.1
Gohir.D10G224900 Gossypium hirsutum HOM05D006356 ORTHO05D007903 0.0e+00 1711.0 1326 65.8
MD07G1193500 Malus domestica HOM05D006356 ORTHO05D007903 0.0e+00 1709.5 1330 65.3
FAN03G2412 Fragaria x ananassa HOM05D006356 ORTHO05D007903 0.0e+00 1708.0 1324 65.0
Ciclev10030528m.g Citrus clementina HOM05D006356 ORTHO05D007903 0.0e+00 1706.4 1324 65.2
Duzib106G0492 Durio zibethinus HOM05D006356 ORTHO05D007903 0.0e+00 1701.0 1328 65.7
FAN10G4053 Fragaria x ananassa HOM05D006356 ORTHO05D007903 0.0e+00 1699.9 1324 64.7
RcHm_v2.0_Chr1g0366221 Rosa chinensis HOM05D006356 ORTHO05D007903 0.0e+00 1696.8 1322 65.2
Gorai.011G255900 Gossypium raimondii HOM05D006356 ORTHO05D007903 0.0e+00 1696.4 1328 65.4
MD01G1123800 Malus domestica HOM05D006356 ORTHO05D007903 0.0e+00 1682.2 1328 64.8
arahy.Tifrunner.gnm1.ann1.C821YF Arachis hypogaea HOM05D006356 ORTHO05D007903 0.0e+00 1673.3 1324 63.4
Actinidia07718 Actinidia chinensis HOM05D006356 ORTHO05D007903 0.0e+00 1672.9 1331 63.4
LjContig00357g0007551 Lotus japonicus HOM05D006356 ORTHO05D007903 0.0e+00 1672.5 1318 63.6
Atru.BG.253.p Acer truncatum HOM05D006356 ORTHO05D007903 0.0e+00 1669.8 1247 67.9
TAR369G0783 Trochodendron aralioides HOM05D006356 ORTHO05D007903 0.0e+00 1656.3 1331 62.2
PGR044G1537 Punica granatum HOM05D006356 ORTHO05D007903 0.0e+00 1644.8 1324 61.8
Medtr1g115300 Medicago truncatula HOM05D006356 ORTHO05D007903 0.0e+00 1635.5 1326 62.7
FAN06G1693 Fragaria x ananassa HOM05D006356 ORTHO05D007903 0.0e+00 1633.6 1242 65.9
Lalb_Chr21g0307391 Lupinus albus HOM05D006356 ORTHO05D007903 0.0e+00 1632.5 1323 62.2
Psat2g006960 Pisum sativum HOM05D006356 ORTHO05D007903 0.0e+00 1626.3 1324 62.4
Rhsim09G0107200 Rhododendron simsii HOM05D006356 ORTHO05D007903 0.0e+00 1625.9 1327 61.9
Glyma.10G289800 Glycine max HOM05D006356 ORTHO05D007903 0.0e+00 1617.4 1323 62.1
Gohir.A10G215900 Gossypium hirsutum HOM05D006356 ORTHO05D007903 0.0e+00 1616.7 1244 66.4
Lj8C87G2 Lonicera japonica HOM05D006356 ORTHO05D007903 0.0e+00 1614.4 1325 62.0
VMungo0720G2582 Vigna mungo HOM05D006356 ORTHO05D007903 0.0e+00 1612.8 1320 61.6
PGSC0003DMG400023520 Solanum tuberosum HOM05D006356 ORTHO05D007903 0.0e+00 1602.0 1319 62.0
Peaxi162Scf00015g01616 Petunia axillaris HOM05D006356 ORTHO05D007903 0.0e+00 1601.3 1318 62.0
Solyc05g054630.4 Solanum lycopersicum HOM05D006356 ORTHO05D007903 0.0e+00 1600.9 1319 61.7
TPR.G13985 Trifolium pratense HOM05D006356 ORTHO05D007903 0.0e+00 1599.7 1324 62.2
Nitab4.5_0006342g0010 Nicotiana tabacum HOM05D006356 ORTHO05D007903 0.0e+00 1593.2 1344 60.5
THA.LOC104799353 Tarenaya hassleriana HOM05D006356 ORTHO05D007903 0.0e+00 1593.2 1319 61.1
Ca_11290_v3 Cicer arietinum L. HOM05D006356 ORTHO05D007903 0.0e+00 1590.1 1259 63.9
Nn2g12928 Nelumbo nucifera HOM05D006356 ORTHO05D007903 0.0e+00 1588.5 1336 60.8
CAN.G1013.4 Capsicum annuum HOM05D006356 ORTHO05D007903 0.0e+00 1586.2 1319 61.4
DCAR_027666 Daucus carota HOM05D006356 ORTHO05D007903 0.0e+00 1585.1 1321 60.8
EL10Ac2g03426 Beta vulgaris HOM05D006356 ORTHO05D007903 0.0e+00 1584.7 1335 60.7
AUR62040952 Chenopodium quinoa HOM05D006356 ORTHO05D007903 0.0e+00 1584.3 1328 60.8
Eucgr.J00045 Eucalyptus grandis HOM05D006356 ORTHO05D007903 0.0e+00 1583.5 1325 61.1
Nitab4.5_0001831g0090 Nicotiana tabacum HOM05D006356 ORTHO05D007903 0.0e+00 1577.0 1319 61.2
vmacro07156 Vaccinium macrocarpon HOM05D006356 ORTHO05D007903 0.0e+00 1576.6 1271 62.4
Thhalv10012453m.g Eutrema salsugineum HOM05D006356 ORTHO05D007903 0.0e+00 1570.8 1326 60.3
Ah.16g107390 Amaranthus hybridus HOM05D006356 ORTHO05D007903 0.0e+00 1560.8 1328 59.6
GSVIVG01016590001 Vitis vinifera HOM05D006356 ORTHO05D007903 0.0e+00 1559.7 1318 61.1
MBI14_g24317_MAGBIO Magnolia biondii HOM05D006356 ORTHO05D007903 0.0e+00 1555.0 1340 60.5
Sc20g0002610 Simmondsia chinensis HOM05D006356 ORTHO05D007903 0.0e+00 1552.7 1331 59.1
Cc02_g08190 Coffea canephora HOM05D006356 ORTHO05D007903 0.0e+00 1551.6 1321 59.2
BolC9t59188H Brassica oleracea HOM05D006356 ORTHO05D007903 0.0e+00 1551.2 1330 59.4
AL6G24290 Arabidopsis lyrata HOM05D006356 ORTHO05D007903 0.0e+00 1547.3 1327 59.8
A10p24610 Brassica napus HOM05D006356 ORTHO05D007903 0.0e+00 1546.6 1329 59.4
Sp6g30340 Schrenkiella parvula HOM05D006356 ORTHO05D007903 0.0e+00 1546.2 1326 59.2
AT5G13680 Arabidopsis thaliana HOM05D006356 ORTHO05D007903 0.0e+00 1543.5 1326 59.5
BraA10t44524Z Brassica rapa HOM05D006356 ORTHO05D007903 0.0e+00 1542.7 1329 59.2
Sopen05g033110 Solanum pennellii HOM05D006356 ORTHO05D007903 0.0e+00 1537.3 1238 63.1
C09p63420 Brassica napus HOM05D006356 ORTHO05D007903 0.0e+00 1532.7 1330 59.2
Aqoxy4G02989 Aquilegia oxysepala HOM05D006356 ORTHO05D007903 0.0e+00 1527.7 1346 58.8
PSO675G9381 Papaver somniferum HOM05D006356 ORTHO05D007903 0.0e+00 1525.0 1331 58.6
Carub.0006s1184 Capsella rubella HOM05D006356 ORTHO05D007903 0.0e+00 1523.5 1326 59.1
Hund20019 Selenicereus undatus HOM05D006356 ORTHO05D007903 0.0e+00 1521.9 1270 59.9
Aa31sc144G30 Aethionema arabicum HOM05D006356 ORTHO05D007903 0.0e+00 1501.9 1355 57.0
PSO541G4186 Papaver somniferum HOM05D006356 ORTHO05D007903 0.0e+00 1500.0 1340 57.2
Atru.chr12.503 Acer truncatum HOM05D006356 ORTHO05D007903 0.0e+00 1488.8 1101 68.4
Migut.H00419 Erythranthe guttata HOM05D006356 ORTHO05D007903 0.0e+00 1481.5 1322 58.1
Manes.07G113200 Manihot esculenta HOM05D006356 ORTHO05D007903 0.0e+00 1475.7 1100 66.9
BcaC04g24267 Brassica carinata HOM05D006356 ORTHO05D007903 0.0e+00 1468.4 1322 57.5
AUR62038374 Chenopodium quinoa HOM05D006356 ORTHO05D007903 0.0e+00 1468.0 1190 62.3
SGA_v2.0_scaffold204G41568 Striga asiatica HOM05D006356 ORTHO05D007903 0.0e+00 1466.8 1328 57.6
ECA233G4627 Erigeron canadensis HOM05D006356 ORTHO05D007903 0.0e+00 1464.5 1324 57.6
HanXRQChr08g0220321 Helianthus annuus HOM05D006356 ORTHO05D007903 0.0e+00 1438.7 1320 56.1
Lsat_1_v5_gn_8_16481 Lactuca sativa HOM05D006356 ORTHO05D007903 0.0e+00 1438.3 1323 57.4
Dinv31432 Davidia involucrata HOM05D006356 ORTHO05D007903 0.0e+00 1434.1 1281 58.9
Phvul.007G011700 Phaseolus vulgaris HOM05D006356 ORTHO05D007903 0.0e+00 1408.7 1132 62.6
CARHR199760 Cardamine hirsuta HOM05D006356 ORTHO05D007903 0.0e+00 1371.3 1149 60.6
Os07g0563700 Oryza sativa ssp. japonica HOM05D006356 ORTHO05D007903 0.0e+00 1354.7 1337 51.7
Zm00001eb082380 Zea mays HOM05D006356 ORTHO05D007903 0.0e+00 1320.4 1318 51.1
COL.COLO4_14974 Corchorus olitorius HOM05D006356 ORTHO05D007903 0.0e+00 1315.1 1323 54.9
Oeu016021.3 Olea europaea HOM05D006356 ORTHO05D007903 0.0e+00 1300.4 1555 47.5
ATR0559G370 Amborella trichopoda HOM05D006356 ORTHO05D007903 0.0e+00 1282.7 1352 50.3
HPP92_012583 Vanilla planifolia HOM05D006356 ORTHO05D007903 0.0e+00 1271.9 1318 51.1
CiPaw.01G284000 Carya illinoinensis HOM05D006356 ORTHO05D007903 0.0e+00 1219.9 945 64.8
Cpa.g.sc1.373 Carica papaya HOM05D006356 ORTHO05D007903 0.0e+00 1173.7 901 64.6
Hma1.2p1_0533F.1_g173660 Hydrangea macrophylla HOM05D006356 ORTHO05D007903 0.0e+00 1094.3 864 64.4
CDE04G3644 Ceratophyllum demersum HOM05D006356 ORTHO05D007903 0.0e+00 1083.2 1329 47.1
SEGI_26197 Sequoiadendron giganteum HOM05D006356 ORTHO05D007903 0.0e+00 1081.6 1253 46.0
Hma1.2p1_0533F.1_g173650 Hydrangea macrophylla HOM05D006356 ORTHO05D007903 2.5e-296 1022.7 756 68.0
Mapoly0015s0194 Marchantia polymorpha HOM05D006356 ORTHO05D007903 5.3e-246 855.5 1367 38.3
SMO352G0087 Selaginella moellendorffii HOM05D006356 ORTHO05D007903 9.7e-232 808.1 1317 37.5
Pp3c8_3890 Physcomitrium patens HOM05D006356 ORTHO05D007903 2.6e-224 783.5 1190 40.6
AagrBONN_evm.TU.Sc2ySwM_362.1673 Anthoceros agrestis HOM05D006356 ORTHO05D007903 3.5e-221 773.1 1194 38.0
unitig_736.g22670 Utricularia gibba HOM05D006356 ORTHO05D007903 1.8e-217 760.8 851 47.4
SEGI_10512 Sequoiadendron giganteum HOM05D006356 ORTHO05D007903 1.9e-198 697.6 804 47.4
CBR_g230 Chara braunii HOM05D006356 ORTHO05D007903 1.2e-152 545.4 1492 29.8
Cpa.g.sc1.372 Carica papaya HOM05D006356 ORTHO05D007903 1.9e-134 485.0 358 69.6
arahy.Tifrunner.gnm1.ann1.1A0WRJ Arachis hypogaea HOM05D006356 ORTHO05D007903 7.4e-131 473.0 376 60.9
unitig_736.g22669 Utricularia gibba HOM05D006356 ORTHO05D007903 7.4e-131 473.0 458 55.2
MCO05G525 Micromonas commoda HOM05D006356 ORTHO05D007903 8.9e-92 343.2 1356 27.2
Actinidia02967 Actinidia chinensis HOM05D006356 ORTHO05D007903 1.6e-85 322.4 313 56.2
Cre08.g372500 Chlamydomonas reinhardtii HOM05D006356 ORTHO05D007903 9.2e-81 306.6 1538 25.0
Nn4g26017 Nelumbo nucifera HOM05D006356 ORTHO05D007903 8.6e-79 300.1 247 59.1
Psat2g034240 Pisum sativum HOM05D006356 ORTHO05D007903 4.1e-73 281.2 305 49.5
Hma1.2p1_0529F.1_g173120 Hydrangea macrophylla HOM05D006356 ORTHO05D007903 5.1e-63 247.7 196 65.3
TAR225G0003 Trochodendron aralioides HOM05D002467 ORTHO05D003907 1.3e-53 216.5 1269 23.3
PRCOL_00001522 Prasinoderma coloniale HOM05D006356 ORTHO05D007903 4.5e-51 208.0 1346 24.9
Psat0s3149g0040 Pisum sativum HOM05D006356 ORTHO05D007903 2.9e-50 205.3 234 47.9
Hma1.2p1_0248F.1_g102020 Hydrangea macrophylla HOM05D006356 ORTHO05D007903 1.3e-47 196.4 167 61.7
Psat0s3149g0080 Pisum sativum HOM05D006356 ORTHO05D007903 2.3e-47 195.7 227 48.0
Psat6g224200 Pisum sativum HOM05D006356 ORTHO05D007903 5.5e-41 174.5 131 68.7
Psat0s4636g0040 Pisum sativum HOM05D006356 ORTHO05D007903 1.9e-38 166.0 122 68.9
Lj5g0016728 Lotus japonicus HOM05D006356 ORTHO05D007903 4.6e-32 144.8 282 38.7
AUR62038375 Chenopodium quinoa HOM05D006356 ORTHO05D007903 2.2e-26 125.9 139 49.6


User provided reference genes

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