Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C025369.2 Cucumis melo HOM05D003917 ORTHO05D005104 4.5e-98 361.3 188 100.0
CsaV3_3G005070 Cucumis sativus L. HOM05D003917 ORTHO05D005104 9.1e-91 337.0 188 93.1
ClCG10G005350 Citrullus lanatus HOM05D003917 ORTHO05D005104 1.7e-76 289.7 188 81.4
Sed0017343 Sechium edule HOM05D003917 ORTHO05D005104 2.7e-66 255.8 188 73.4
Sed0024585 Sechium edule HOM05D003917 ORTHO05D005104 4.1e-59 231.9 190 66.8
Duzib213G0954 Durio zibethinus HOM05D003917 ORTHO05D005104 6.4e-44 181.4 191 56.0
Solyc07g064600.3 Solanum lycopersicum HOM05D003917 ORTHO05D005104 2.4e-43 179.5 144 66.0
FAN21G1759 Fragaria x ananassa HOM05D003917 ORTHO05D005104 5.4e-43 178.3 194 55.2
FAN25G1034 Fragaria x ananassa HOM05D003917 ORTHO05D005104 5.4e-43 178.3 194 55.2
CANSAT01G2526 Cannabis sativa HOM05D003917 ORTHO05D005104 7.0e-43 177.9 200 53.5
FvH4_3g22680 Fragaria vesca HOM05D003917 ORTHO05D005104 9.2e-43 177.6 194 54.6
LjContig00272g0007438 Lotus japonicus HOM05D003917 ORTHO05D005104 1.2e-42 177.2 164 59.1
CsaV3_3G005080 Cucumis sativus L. HOM05D003917 ORTHO05D005104 2.7e-42 176.0 195 53.8
ClCG10G005360 Citrullus lanatus HOM05D003917 ORTHO05D005104 3.5e-42 175.6 197 54.8
BcaC05g28323 Brassica carinata HOM05D003917 ORTHO05D005104 4.6e-42 175.3 186 55.4
A05p28510 Brassica napus HOM05D003917 ORTHO05D005104 4.6e-42 175.3 186 55.4
C05p43960 Brassica napus HOM05D003917 ORTHO05D005104 4.6e-42 175.3 186 55.4
BolC5t33114H Brassica oleracea HOM05D003917 ORTHO05D005104 4.6e-42 175.3 186 55.4
MD03G1200800 Malus domestica HOM05D003917 ORTHO05D005104 4.6e-42 175.3 196 53.6
RhsimUnG0250500 Rhododendron simsii HOM05D003917 ORTHO05D005104 4.6e-42 175.3 191 53.9
RcHm_v2.0_Chr5g0039491 Rosa chinensis HOM05D003917 ORTHO05D005104 4.6e-42 175.3 192 55.2
Sopen07g032790 Solanum pennellii HOM05D003917 ORTHO05D005104 4.6e-42 175.3 144 64.6
PGSC0003DMG400022217 Solanum tuberosum HOM05D003917 ORTHO05D005104 4.6e-42 175.3 186 55.9
ECA240G3908 Erigeron canadensis HOM05D003917 ORTHO05D005104 6.0e-42 174.9 186 55.4
C03p51140 Brassica napus HOM05D003917 ORTHO05D005104 1.0e-41 174.1 149 59.1
Gohir.D13G142900 Gossypium hirsutum HOM05D003917 ORTHO05D005104 1.0e-41 174.1 173 57.2
Ah.06g186000 Amaranthus hybridus HOM05D003917 ORTHO05D005104 1.3e-41 173.7 196 52.6
Carub.0003s2033 Capsella rubella HOM05D003917 ORTHO05D005104 1.3e-41 173.7 181 55.2
Hund01991 Selenicereus undatus HOM05D003917 ORTHO05D005104 1.3e-41 173.7 144 62.5
Cfa020343 Carpinus fangiana HOM05D003917 ORTHO05D005104 1.7e-41 173.3 196 52.0
Lj6g0025956 Lotus japonicus HOM05D003917 ORTHO05D005104 1.7e-41 173.3 190 53.7
ECA246G4209 Erigeron canadensis HOM05D003917 ORTHO05D005104 2.3e-41 172.9 181 56.9
QL08p010140 Quercus lobata HOM05D003917 ORTHO05D005104 2.3e-41 172.9 195 51.8
Thecc.07G036800 Theobroma cacao HOM05D003917 ORTHO05D005104 2.3e-41 172.9 191 53.9
Aa31LG8G7200 Aethionema arabicum HOM05D003917 ORTHO05D005104 3.0e-41 172.6 197 52.8
Glyma.14G023600 Glycine max HOM05D003917 ORTHO05D005104 3.0e-41 172.6 190 52.1
HanXRQChr03g0076521 Helianthus annuus HOM05D003917 ORTHO05D005104 3.0e-41 172.6 151 60.3
MD11G1217800 Malus domestica HOM05D003917 ORTHO05D005104 3.0e-41 172.6 196 53.1
Prupe.4G213500 Prunus persica HOM05D003917 ORTHO05D005104 3.0e-41 172.6 196 53.1
VMungo0647G2080 Vigna mungo HOM05D003917 ORTHO05D005104 3.0e-41 172.6 189 53.4
A03p41760 Brassica napus HOM05D003917 ORTHO05D005104 3.9e-41 172.2 149 58.4
BraA03t13329Z Brassica rapa HOM05D003917 ORTHO05D005104 3.9e-41 172.2 149 58.4
Gohir.A13G138100 Gossypium hirsutum HOM05D003917 ORTHO05D005104 3.9e-41 172.2 173 56.6
Lsat_1_v5_gn_5_3940 Lactuca sativa HOM05D003917 ORTHO05D005104 3.9e-41 172.2 149 60.4
Glyma.18G096900 Glycine max HOM05D003917 ORTHO05D005104 5.0e-41 171.8 184 53.3
Phvul.006G043400 Phaseolus vulgaris HOM05D003917 ORTHO05D005104 5.0e-41 171.8 186 53.8
AL3G34100 Arabidopsis lyrata HOM05D003917 ORTHO05D005104 6.6e-41 171.4 181 54.1
CSS0021043 Camellia sinensis var. sinensis HOM05D003917 ORTHO05D005104 6.6e-41 171.4 157 59.2
Gorai.013G159800 Gossypium raimondii HOM05D003917 ORTHO05D005104 6.6e-41 171.4 180 56.7
THA.LOC104816925 Tarenaya hassleriana HOM05D003917 ORTHO05D005104 6.6e-41 171.4 165 59.4
AT3G20390 Arabidopsis thaliana HOM05D003917 ORTHO05D005104 8.6e-41 171.0 188 52.1
arahy.Tifrunner.gnm1.ann1.YBSA71 Arachis hypogaea HOM05D003917 ORTHO05D005104 8.6e-41 171.0 146 60.3
arahy.Tifrunner.gnm1.ann1.ZCST78 Arachis hypogaea HOM05D003917 ORTHO05D005104 8.6e-41 171.0 186 52.2
COL.COLO4_09663 Corchorus olitorius HOM05D003917 ORTHO05D005104 8.6e-41 171.0 191 53.4
Eucgr.F00763 Eucalyptus grandis HOM05D003917 ORTHO05D005104 8.6e-41 171.0 157 59.2
Eucgr.L03176 Eucalyptus grandis HOM05D003917 ORTHO05D005104 8.6e-41 171.0 157 59.2
Hma1.2p1_0673F.1_g201365 Hydrangea macrophylla HOM05D003917 ORTHO05D005104 8.6e-41 171.0 194 52.6
Hma1.2p1_0673F.1_g201370 Hydrangea macrophylla HOM05D003917 ORTHO05D005104 8.6e-41 171.0 194 52.6
TWI39G1026 Tripterygium wilfordii HOM05D003917 ORTHO05D005104 8.6e-41 171.0 164 56.7
TAR626G1684 Trochodendron aralioides HOM05D003917 ORTHO05D005104 8.6e-41 171.0 169 57.4
vmacro09714 Vaccinium macrocarpon HOM05D003917 ORTHO05D005104 8.6e-41 171.0 193 52.3
BcaC01g03555 Brassica carinata HOM05D003917 ORTHO05D005104 1.1e-40 170.6 153 59.5
Ca_01713_v3 Cicer arietinum L. HOM05D003917 ORTHO05D005104 1.1e-40 170.6 190 51.6
PGR083G1099 Punica granatum HOM05D003917 ORTHO05D005104 1.5e-40 170.2 195 53.3
Glyma.08G316200 Glycine max HOM05D003917 ORTHO05D005104 1.9e-40 169.9 184 52.7
VMungo0540G1915 Vigna mungo HOM05D003917 ORTHO05D005104 1.9e-40 169.9 144 61.1
CiPaw.12G129800 Carya illinoinensis HOM05D003917 ORTHO05D005104 2.5e-40 169.5 192 53.6
GSVIVG01037650001 Vitis vinifera HOM05D003917 ORTHO05D005104 2.5e-40 169.5 191 53.4
Lalb_Chr17g0348491 Lupinus albus HOM05D003917 ORTHO05D005104 3.3e-40 169.1 144 61.1
Medtr3g051740 Medicago truncatula HOM05D003917 ORTHO05D005104 3.3e-40 169.1 185 53.0
Sp3g18400 Schrenkiella parvula HOM05D003917 ORTHO05D005104 3.3e-40 169.1 145 60.0
BcaB06g26102 Brassica carinata HOM05D003917 ORTHO05D005104 4.3e-40 168.7 187 54.5
BcaB06g26104 Brassica carinata HOM05D003917 ORTHO05D005104 4.3e-40 168.7 187 54.5
CARHR096100 Cardamine hirsuta HOM05D003917 ORTHO05D005104 4.3e-40 168.7 187 51.3
Sed0004226 Sechium edule HOM05D003917 ORTHO05D005104 4.3e-40 168.7 185 55.7
Sc16g0006040 Simmondsia chinensis HOM05D003917 ORTHO05D005104 5.6e-40 168.3 198 51.5
TPR.G1217 Trifolium pratense HOM05D003917 ORTHO05D005104 5.6e-40 168.3 148 62.2
DCAR_016705 Daucus carota HOM05D003917 ORTHO05D005104 7.3e-40 167.9 169 56.2
Thhalv10021595m.g Eutrema salsugineum HOM05D003917 ORTHO05D005104 7.3e-40 167.9 185 53.0
MBI18_g14473_MAGBIO Magnolia biondii HOM05D003917 ORTHO05D005104 7.3e-40 167.9 193 52.3
BcaB04g19109 Brassica carinata HOM05D003917 ORTHO05D005104 1.2e-39 167.2 145 59.3
AUR62015777 Chenopodium quinoa HOM05D003917 ORTHO05D005104 2.1e-39 166.4 196 51.0
AUR62020441 Chenopodium quinoa HOM05D003917 ORTHO05D005104 2.8e-39 166.0 194 51.5
HanXRQChr05g0159361 Helianthus annuus HOM05D003917 ORTHO05D005104 3.6e-39 165.6 142 61.3
Psat5g178840 Pisum sativum HOM05D003917 ORTHO05D005104 4.7e-39 165.2 191 51.3
Cc05_g13680 Coffea canephora HOM05D003917 ORTHO05D005104 6.2e-39 164.9 188 53.7
Medtr5g092740 Medicago truncatula HOM05D003917 ORTHO05D005104 8.1e-39 164.5 146 61.6
Atru.chr2.3409 Acer truncatum HOM05D003917 ORTHO05D005104 1.1e-38 164.1 137 62.0
Lalb_Chr20g0113861 Lupinus albus HOM05D003917 ORTHO05D005104 1.1e-38 164.1 184 51.6
EL10Ac4g07805 Beta vulgaris HOM05D003917 ORTHO05D005104 1.4e-38 163.7 196 50.0
CSS0032620 Camellia sinensis var. sinensis HOM05D003917 ORTHO05D005104 2.3e-38 162.9 190 51.6
SGA_v2.0_scaffold8G04319 Striga asiatica HOM05D003917 ORTHO05D005104 2.3e-38 162.9 189 51.3
BcaB04g20655 Brassica carinata HOM05D003917 ORTHO05D005104 3.1e-38 162.5 199 50.8
Lalb_Chr15g0081161 Lupinus albus HOM05D003917 ORTHO05D005104 3.1e-38 162.5 146 58.9
unitig_22.g6623 Utricularia gibba HOM05D001290 ORTHO05D001180 3.1e-38 162.5 145 60.0
CAN.G1781.2 Capsicum annuum HOM05D003917 ORTHO05D005104 5.2e-38 161.8 143 58.0
Peaxi162Scf00834g00044 Petunia axillaris HOM05D003917 ORTHO05D005104 5.2e-38 161.8 188 53.2
Psat2g010880 Pisum sativum HOM05D003917 ORTHO05D005104 5.2e-38 161.8 146 58.2
PGSC0003DMG400014388 Solanum tuberosum HOM05D003917 ORTHO05D005104 6.8e-38 161.4 188 51.6
PSO832G0061 Papaver somniferum HOM05D003917 ORTHO05D005104 8.9e-38 161.0 195 50.3
BcaC09g48993 Brassica carinata HOM05D003917 ORTHO05D005104 1.5e-37 160.2 174 54.0
Sabra16G0289800 Salix brachista HOM05D003917 ORTHO05D005104 2.0e-37 159.8 132 59.1
Solyc10g006290.3 Solanum lycopersicum HOM05D003917 ORTHO05D005104 2.0e-37 159.8 188 51.1
Sopen10g002240 Solanum pennellii HOM05D003917 ORTHO05D005104 2.0e-37 159.8 186 50.5
unitig_8.g3276 Utricularia gibba HOM05D003917 ORTHO05D005104 2.0e-37 159.8 145 59.3
CDE11G0283 Ceratophyllum demersum HOM05D000789 ORTHO05D005104 2.6e-37 159.5 189 49.7
Manes.15G071800 Manihot esculenta HOM05D003917 ORTHO05D005104 2.6e-37 159.5 148 58.1
SMO144G0016 Selaginella moellendorffii HOM05D003917 ORTHO05D005104 2.6e-37 159.5 140 60.0
Mapoly0108s0009 Marchantia polymorpha HOM05D003917 ORTHO05D005104 3.4e-37 159.1 122 65.6
Migut.H01827 Erythranthe guttata HOM05D003917 ORTHO05D005104 4.4e-37 158.7 145 58.6
MSTRG.14435 Avicennia marina HOM05D003917 ORTHO05D005104 5.8e-37 158.3 177 55.4
A01p34300 Brassica napus HOM05D003917 ORTHO05D005104 5.8e-37 158.3 123 67.5
C01p43730 Brassica napus HOM05D003917 ORTHO05D005104 5.8e-37 158.3 123 67.5
BolC1t04332H Brassica oleracea HOM05D003917 ORTHO05D005104 5.8e-37 158.3 123 67.5
BraA01t03528Z Brassica rapa HOM05D003917 ORTHO05D005104 7.5e-37 157.9 123 66.7
Haze_09691 Corylus avellana HOM05D003917 ORTHO05D005104 7.5e-37 157.9 174 52.3
Aqoxy1G03502 Aquilegia oxysepala HOM05D003917 ORTHO05D005104 1.3e-36 157.1 195 49.2
QL08p010146 Quercus lobata HOM05D003917 ORTHO05D005104 1.3e-36 157.1 130 63.1
HPP92_004132 Vanilla planifolia HOM05D003917 ORTHO05D005104 2.2e-36 156.4 195 49.2
Oeu005531.1 Olea europaea HOM05D003917 ORTHO05D005104 4.9e-36 155.2 124 63.7
Os07g0516200 Oryza sativa ssp. japonica HOM05D003917 ORTHO05D005104 4.9e-36 155.2 178 50.6
PSO210G5830 Papaver somniferum HOM05D003917 ORTHO05D005104 6.4e-36 154.8 195 48.7
Potri.011G139600 Populus trichocarpa HOM05D003917 ORTHO05D005104 8.3e-36 154.5 135 58.5
Dinv22262 Davidia involucrata HOM05D006187 ORTHO05D007621 1.1e-35 154.1 139 60.4
AagrBONN_evm.TU.Sc2ySwM_117.1972 Anthoceros agrestis HOM05D003917 ORTHO05D005104 1.4e-35 153.7 124 62.9
Potri.001G435700 Populus trichocarpa HOM05D003917 ORTHO05D005104 1.4e-35 153.7 124 61.3
Zm00001eb322650 Zea mays HOM05D003917 ORTHO05D005104 1.4e-35 153.7 189 49.7
Actinidia35344 Actinidia chinensis HOM05D006187 ORTHO05D007621 1.9e-35 153.3 126 63.5
Dinv40754 Davidia involucrata HOM05D003917 ORTHO05D005104 4.1e-35 152.1 137 60.6
Sabra11G0125600 Salix brachista HOM05D003917 ORTHO05D005104 5.4e-35 151.8 120 64.2
Oeu007580.1 Olea europaea HOM05D003917 ORTHO05D005104 9.2e-35 151.0 125 62.4
Duzib093G2089 Durio zibethinus HOM05D003917 ORTHO05D005104 1.2e-34 150.6 177 50.3
Pp3c13_21770 Physcomitrium patens HOM05D003917 ORTHO05D005104 1.2e-34 150.6 128 57.8
Nitab4.5_0004829g0030 Nicotiana tabacum HOM05D003917 ORTHO05D005104 1.6e-34 150.2 163 52.1
MD11G1218500 Malus domestica HOM05D003917 ORTHO05D005104 2.1e-34 149.8 183 50.3
Ciclev10009443m.g Citrus clementina HOM05D003917 ORTHO05D005104 3.5e-34 149.1 222 41.9
MCO11G845 Micromonas commoda HOM05D003917 ORTHO05D005104 6.6e-33 144.8 122 60.7
CBR_g32332 Chara braunii HOM05D003917 ORTHO05D005104 8.6e-33 144.4 122 60.7
Cre16.g669650 Chlamydomonas reinhardtii HOM05D003917 ORTHO05D005104 2.5e-32 142.9 183 46.4
A01p34290 Brassica napus HOM05D003917 ORTHO05D005104 3.3e-32 142.5 207 45.4
FAN11G2833 Fragaria x ananassa HOM05D003917 ORTHO05D005104 5.6e-32 141.7 124 60.5
Lj8C169T22 Lonicera japonica HOM05D003917 ORTHO05D005104 1.6e-31 140.2 175 45.7
MELO3C031909.2 Cucumis melo HOM05D003917 ORTHO05D005104 1.4e-30 137.1 145 54.5
Nn1g03531 Nelumbo nucifera HOM05D003917 ORTHO05D005104 7.6e-29 131.3 157 52.2
CiPaw.11G189400 Carya illinoinensis HOM05D003917 ORTHO05D005104 1.3e-28 130.6 196 46.4
PRCOL_00004025 Prasinoderma coloniale HOM05D003917 ORTHO05D005104 1.3e-28 130.6 122 54.1
Lj1A872G53 Lonicera japonica HOM05D003917 ORTHO05D005104 2.2e-28 129.8 148 51.4
Lsat_1_v5_gn_9_93900 Lactuca sativa HOM05D003917 ORTHO05D005104 3.8e-28 129.0 154 50.0
Duzib093G1533 Durio zibethinus HOM05D003917 ORTHO05D005104 1.9e-27 126.7 159 48.4
ATR0776G085 Amborella trichopoda HOM05D003917 ORTHO05D005104 2.4e-27 126.3 102 58.8
Duzib093G1470 Durio zibethinus HOM05D003917 ORTHO05D005104 2.4e-27 126.3 159 48.4
ATR0794G030 Amborella trichopoda HOM05D003917 ORTHO05D005104 4.1e-27 125.6 116 50.9
Nitab4.5_0001393g0140 Nicotiana tabacum HOM05D003917 ORTHO05D005104 1.6e-26 123.6 146 47.9
ATR0794G138 Amborella trichopoda HOM05D003917 ORTHO05D005104 3.0e-25 119.4 103 54.4
Glyma.02G291100 Glycine max HOM05D003917 ORTHO05D005104 8.6e-25 117.9 140 47.9
BcaC05g28324 Brassica carinata HOM05D000399 ORTHO05D000304 3.1e-22 109.4 97 57.7
BraA01t03527Z Brassica rapa HOM05D003917 ORTHO05D005104 2.0e-21 106.7 149 46.3
BcaC01g01693 Brassica carinata HOM05D003917 ORTHO05D005104 9.9e-21 104.4 87 59.8
Phvul.008G266800 Phaseolus vulgaris HOM05D003917 ORTHO05D005104 7.1e-19 98.2 137 45.3
FAN16G0676 Fragaria x ananassa HOM05D003917 ORTHO05D005104 8.7e-17 91.3 70 68.6
FAN16G0616 Fragaria x ananassa HOM05D003917 ORTHO05D005104 1.6e-15 87.0 82 57.3
Gorai.002G088600 Gossypium raimondii HOM05D003917 ORTHO05D005104 2.1e-15 86.7 69 68.1
Gohir.D01G066600 Gossypium hirsutum HOM05D003917 ORTHO05D005104 8.1e-15 84.7 69 66.7
CBR_g3731 Chara braunii HOM05D003917 ORTHO05D028724 2.0e-13 80.1 68 55.9
SGA_v2.0_scaffold698G53480 Striga asiatica HOM05D003917 ORTHO05D024981 4.2e-11 72.4 61 57.4
Oeu042771.1 Olea europaea HOM05D003917 ORTHO05D005104 7.1e-11 71.6 114 44.7
SGA_v2.0_scaffold31G12886 Striga asiatica HOM05D003917 ORTHO05D024981 9.3e-11 71.2 61 55.7
C01p43720 Brassica napus HOM05D003917 ORTHO05D005104 1.2e-10 70.9 100 43.0
AUR62016539 Chenopodium quinoa HOM05D003917 ORTHO05D024981 1.2e-10 70.9 49 65.3
AUR62006502 Chenopodium quinoa HOM05D003917 ORTHO05D024981 1.6e-10 70.5 52 61.5
BolC1t04330H Brassica oleracea HOM05D003917 ORTHO05D005104 2.7e-10 69.7 100 42.0
Oeu021198.1 Olea europaea HOM05D003917 ORTHO05D005104 5.1e-09 65.5 48 70.8
Cfa023258 Carpinus fangiana HOM05D003917 ORTHO05D126232 3.3e-08 62.8 124 29.0
Pp3s32_520 Physcomitrium patens HOM05D003917 ORTHO05D309786 2.4e-06 56.6 122 31.1


User provided reference genes

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