Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C024652.2 Cucumis melo HOM05D005790 ORTHO05D007464 4.2e-228 794.3 383 100.0
CsaV3_1G045470 Cucumis sativus L. HOM05D005790 ORTHO05D007464 5.5e-220 767.3 384 96.9
ClCG05G018560 Citrullus lanatus HOM05D005790 ORTHO05D007464 5.8e-201 704.1 412 84.2
Sed0009865 Sechium edule HOM05D005790 ORTHO05D007464 9.9e-185 650.2 388 82.0
CsaV3_UNG233270 Cucumis sativus L. HOM05D005790 ORTHO05D007464 2.2e-160 569.3 304 91.8
Dinv31817 Davidia involucrata HOM05D005790 ORTHO05D007464 7.9e-158 560.8 388 70.6
Cfa013914 Carpinus fangiana HOM05D005790 ORTHO05D007464 3.7e-155 552.0 389 68.6
Prupe.1G369900 Prunus persica HOM05D005790 ORTHO05D007464 1.8e-154 549.7 394 69.3
RcHm_v2.0_Chr6g0272131 Rosa chinensis HOM05D005790 ORTHO05D007464 1.8e-154 549.7 386 68.4
FvH4_2g39120 Fragaria vesca HOM05D005790 ORTHO05D007464 1.2e-153 547.0 386 67.6
GSVIVG01009836001 Vitis vinifera HOM05D005790 ORTHO05D007464 2.5e-151 539.3 382 67.0
CiPaw.07G153400 Carya illinoinensis HOM05D005790 ORTHO05D007464 5.5e-151 538.1 390 68.7
MD15G1016100 Malus domestica HOM05D005790 ORTHO05D007464 7.1e-151 537.7 389 67.9
CANSAT01G0079 Cannabis sativa HOM05D005790 ORTHO05D007464 1.6e-150 536.6 382 67.8
Actinidia37976 Actinidia chinensis HOM05D005790 ORTHO05D007464 6.0e-150 534.6 387 68.0
PGR031G1208 Punica granatum HOM05D005790 ORTHO05D007464 7.9e-150 534.3 388 65.2
Potri.009G002100 Populus trichocarpa HOM05D005790 ORTHO05D007464 1.0e-149 533.9 388 68.6
COL.COLO4_26188 Corchorus olitorius HOM05D005790 ORTHO05D007464 3.9e-149 531.9 395 66.3
Phvul.009G014700 Phaseolus vulgaris HOM05D005790 ORTHO05D007464 5.1e-149 531.6 386 64.5
FAN20G0385 Fragaria x ananassa HOM05D005790 ORTHO05D007464 8.7e-149 530.8 391 65.2
Manes.13G125500 Manihot esculenta HOM05D005790 ORTHO05D007464 8.7e-149 530.8 389 67.1
Gohir.A06G005800 Gossypium hirsutum HOM05D005790 ORTHO05D007464 1.5e-148 530.0 388 66.0
Eucgr.J01034 Eucalyptus grandis HOM05D005790 ORTHO05D007464 3.3e-148 528.9 385 66.5
CSS0050056 Camellia sinensis var. sinensis HOM05D005790 ORTHO05D007464 1.3e-147 526.9 386 66.8
Gorai.010G006000 Gossypium raimondii HOM05D005790 ORTHO05D007464 1.6e-147 526.6 388 65.7
VMungo1309G1814 Vigna mungo HOM05D005790 ORTHO05D007464 8.2e-147 524.2 386 64.0
Gohir.D06G001600 Gossypium hirsutum HOM05D005790 ORTHO05D007464 9.0e-146 520.8 388 64.9
TAR381G1687 Trochodendron aralioides HOM05D005790 ORTHO05D007464 1.2e-145 520.4 406 64.5
FAN15G2431 Fragaria x ananassa HOM05D005790 ORTHO05D007464 2.0e-145 519.6 425 60.7
Glyma.06G026400 Glycine max HOM05D005790 ORTHO05D007464 2.6e-145 519.2 386 64.5
Ca_02056_v3 Cicer arietinum L. HOM05D005790 ORTHO05D007464 5.8e-145 518.1 383 65.3
Lj1g0012079 Lotus japonicus HOM05D005790 ORTHO05D007464 5.8e-145 518.1 394 64.5
vmacro21704 Vaccinium macrocarpon HOM05D005790 ORTHO05D007464 5.8e-145 518.1 401 64.1
MD08G1017100 Malus domestica HOM05D005790 ORTHO05D007464 2.2e-144 516.2 415 63.1
QL02p010842 Quercus lobata HOM05D005790 ORTHO05D007464 2.2e-144 516.2 455 59.1
FAN20G1847 Fragaria x ananassa HOM05D005790 ORTHO05D007464 3.8e-144 515.4 420 60.7
PSO675G3524 Papaver somniferum HOM05D005790 ORTHO05D007464 3.8e-144 515.4 389 64.0
Lalb_Chr08g0246071 Lupinus albus HOM05D005790 ORTHO05D007464 8.4e-144 514.2 382 64.9
Medtr3g113190 Medicago truncatula HOM05D005790 ORTHO05D007464 1.4e-143 513.5 383 64.0
CARHR237760 Cardamine hirsuta HOM05D005790 ORTHO05D007464 9.3e-143 510.8 383 62.9
arahy.Tifrunner.gnm1.ann1.BXK9RQ Arachis hypogaea HOM05D005790 ORTHO05D007464 1.2e-142 510.4 386 64.8
TWI36G0257 Tripterygium wilfordii HOM05D005790 ORTHO05D007464 2.1e-142 509.6 407 62.4
arahy.Tifrunner.gnm1.ann1.S6ZM1I Arachis hypogaea HOM05D005790 ORTHO05D007464 4.6e-142 508.4 386 64.8
PSO541G0736 Papaver somniferum HOM05D005790 ORTHO05D007464 4.6e-142 508.4 383 64.2
Sp7g27670 Schrenkiella parvula HOM05D005790 ORTHO05D007464 1.3e-141 506.9 383 62.7
Ciclev10008674m.g Citrus clementina HOM05D005790 ORTHO05D007464 5.1e-141 505.0 388 63.7
AL7G22390 Arabidopsis lyrata HOM05D005790 ORTHO05D007464 8.7e-141 504.2 384 61.7
Thhalv10025433m.g Eutrema salsugineum HOM05D005790 ORTHO05D007464 1.5e-140 503.4 382 61.0
ECA247G0379 Erigeron canadensis HOM05D005790 ORTHO05D007464 5.7e-140 501.5 382 62.6
Cc10_g02010 Coffea canephora HOM05D005790 ORTHO05D007464 4.8e-139 498.4 384 65.1
PGSC0003DMG400016117 Solanum tuberosum HOM05D005790 ORTHO05D007464 4.8e-139 498.4 385 62.6
Carub.0004s1477 Capsella rubella HOM05D005790 ORTHO05D007464 1.4e-138 496.9 382 61.8
Lsat_1_v5_gn_1_16241 Lactuca sativa HOM05D005790 ORTHO05D007464 1.4e-138 496.9 387 62.5
BraA01t00778Z Brassica rapa HOM05D005790 ORTHO05D007464 4.1e-138 495.4 384 61.2
Aqoxy2G03135 Aquilegia oxysepala HOM05D005790 ORTHO05D007464 5.3e-138 495.0 380 64.2
AT4G29860 Arabidopsis thaliana HOM05D005790 ORTHO05D007464 9.0e-138 494.2 384 60.9
DCAR_017500 Daucus carota HOM05D005790 ORTHO05D007464 9.0e-138 494.2 388 63.9
Sopen11g005650 Solanum pennellii HOM05D005790 ORTHO05D007464 1.2e-137 493.8 385 62.3
Solyc11g010910.3 Solanum lycopersicum HOM05D005790 ORTHO05D007464 2.0e-137 493.0 385 62.3
EL10Ac1g00445 Beta vulgaris HOM05D005790 ORTHO05D007464 3.4e-137 492.3 382 63.1
C01p09340 Brassica napus HOM05D005790 ORTHO05D007464 3.4e-137 492.3 385 60.8
BolC1t00922H Brassica oleracea HOM05D005790 ORTHO05D007464 3.4e-137 492.3 385 60.8
A01p08300 Brassica napus HOM05D005790 ORTHO05D007464 7.7e-137 491.1 385 61.0
Rhsim06G0026000 Rhododendron simsii HOM05D005790 ORTHO05D007464 2.9e-136 489.2 471 55.0
AUR62019151 Chenopodium quinoa HOM05D005790 ORTHO05D007464 8.5e-136 487.6 385 62.1
AUR62014415 Chenopodium quinoa HOM05D005790 ORTHO05D007464 1.4e-133 480.3 408 59.3
MSTRG.18414 Avicennia marina HOM05D005790 ORTHO05D007464 1.8e-133 479.9 380 62.6
Duzib093G0196 Durio zibethinus HOM05D005790 ORTHO05D007464 9.7e-132 474.2 356 64.6
Haze_22599 Corylus avellana HOM05D005790 ORTHO05D007464 4.8e-131 471.9 499 51.7
CSS0048998 Camellia sinensis var. sinensis HOM05D005790 ORTHO05D007464 1.4e-130 470.3 355 65.1
Sc02g0005160 Simmondsia chinensis HOM05D005790 ORTHO05D007464 1.4e-130 470.3 381 60.9
Thecc.08G038500 Theobroma cacao HOM05D005790 ORTHO05D007464 2.7e-126 456.1 390 59.5
Zm00001eb378230 Zea mays HOM05D005790 ORTHO05D007464 1.4e-125 453.8 384 55.5
Nn5g29250 Nelumbo nucifera HOM05D005790 ORTHO05D007464 1.1e-124 450.7 372 60.5
HanXRQChr02g0043921 Helianthus annuus HOM05D005790 ORTHO05D007464 1.5e-124 450.3 368 60.9
Peaxi162Scf00085g00528 Petunia axillaris HOM05D005790 ORTHO05D007464 9.7e-124 447.6 386 59.3
ATR0945G002 Amborella trichopoda HOM05D005790 ORTHO05D007464 2.8e-123 446.0 401 56.1
Migut.D00577 Erythranthe guttata HOM05D005790 ORTHO05D007464 1.8e-122 443.4 383 56.9
SGA_v2.0_scaffold8G04609 Striga asiatica HOM05D005790 ORTHO05D007464 2.0e-121 439.9 389 56.8
SHI02412 Sapria himalayana HOM05D005790 ORTHO05D007464 2.6e-121 439.5 389 56.0
THA.LOC104811397 Tarenaya hassleriana HOM05D005790 ORTHO05D007464 1.9e-119 433.3 381 56.2
Os06g0131100 Oryza sativa ssp. japonica HOM05D005790 ORTHO05D007464 8.0e-118 427.9 382 53.4
unitig_26.g10135 Utricularia gibba HOM05D005790 ORTHO05D007464 1.0e-117 427.6 380 54.2
Atru.BG.234.p Acer truncatum HOM05D005790 ORTHO05D007464 1.5e-116 423.7 380 56.8
Sabra09G0000400 Salix brachista HOM05D005790 ORTHO05D007464 5.7e-108 395.2 496 46.6
Lj4A790T66 Lonicera japonica HOM05D005790 ORTHO05D007464 2.2e-107 393.3 338 58.9
FAN27G0896 Fragaria x ananassa HOM05D005790 ORTHO05D007464 2.2e-104 383.3 415 51.1
Ah.05g171860 Amaranthus hybridus HOM05D005790 ORTHO05D007464 1.1e-95 354.4 327 54.1
Atru.chr13.345 Acer truncatum HOM05D005790 ORTHO05D007464 9.5e-95 351.3 220 72.7
Aqoxy4G01228 Aquilegia oxysepala HOM05D005790 ORTHO05D007464 2.3e-88 330.1 278 60.1
Mapoly0014s0217 Marchantia polymorpha HOM05D005790 ORTHO05D007464 7.3e-87 325.1 383 45.2
SMO147G0253 Selaginella moellendorffii HOM05D005790 ORTHO05D007464 2.1e-86 323.6 381 45.7
Aa31LG4G5850 Aethionema arabicum HOM05D005790 ORTHO05D007464 4.1e-82 309.3 291 54.6
Pp3c20_12860 Physcomitrium patens HOM05D005790 ORTHO05D007464 4.1e-82 309.3 379 42.2
TPR.G30295 Trifolium pratense HOM05D005790 ORTHO05D007464 2.0e-76 290.4 170 75.3
SalBow1G3128 Salvia bowleyana HOM05D005790 ORTHO05D007464 2.6e-76 290.0 219 62.6
Oeu061776.2 Olea europaea HOM05D005790 ORTHO05D000708 2.2e-75 287.0 351 46.4
Psat5g014800 Pisum sativum HOM05D005790 ORTHO05D007464 5.1e-72 275.8 236 57.6
CDE05G1328 Ceratophyllum demersum HOM05D005790 ORTHO05D007464 2.9e-67 260.0 168 67.3
Actinidia29793 Actinidia chinensis HOM05D005790 ORTHO05D007464 3.2e-66 256.5 410 42.4
Nitab4.5_0000402g0120 Nicotiana tabacum HOM05D005790 ORTHO05D007464 2.1e-65 253.8 240 56.2
Hund17229 Selenicereus undatus HOM05D005790 ORTHO05D007464 5.6e-63 245.7 146 72.6
RcHm_v2.0_Chr6g0302231 Rosa chinensis HOM05D005790 ORTHO05D007464 2.1e-62 243.8 248 52.4
Psat5g014760 Pisum sativum HOM05D005790 ORTHO05D007464 6.8e-61 238.8 141 74.5
MBI09_g08426_MAGBIO Magnolia biondii HOM05D005790 ORTHO05D007464 1.9e-55 220.7 377 38.7
RcHm_v2.0_Chr4g0408871 Rosa chinensis HOM05D005790 ORTHO05D007464 9.6e-55 218.4 384 38.0
Cpa.g.sc140.27 Carica papaya HOM05D005790 ORTHO05D007464 5.8e-52 209.1 162 64.2
CBR_g7976 Chara braunii HOM05D001993 ORTHO05D004040 8.4e-51 205.3 564 28.0
Nitab4.5_0000402g0130 Nicotiana tabacum HOM05D005790 ORTHO05D007464 2.1e-49 200.7 121 74.4
TPR.G30287 Trifolium pratense HOM05D005790 ORTHO05D007464 6.6e-48 195.7 122 71.3
TWI36G0035 Tripterygium wilfordii HOM05D005790 ORTHO05D007464 8.7e-48 195.3 123 70.7
Gorai.010G006300 Gossypium raimondii HOM05D005790 ORTHO05D007464 4.3e-47 193.0 114 72.8
CBR_g24442 Chara braunii HOM05D005790 ORTHO05D007464 3.1e-45 186.8 212 45.8
AagrBONN_evm.TU.Sc2ySwM_369.164 Anthoceros agrestis HOM05D005790 ORTHO05D007464 3.8e-43 179.9 273 39.6
Aa31LG4G5860 Aethionema arabicum HOM05D005790 ORTHO05D007464 4.3e-39 166.4 99 75.8
SEGI_31412 Sequoiadendron giganteum HOM05D005790 ORTHO05D007464 1.8e-37 161.0 252 40.1
RcHm_v2.0_Chr6g0302371 Rosa chinensis HOM05D005790 ORTHO05D007464 3.1e-37 160.2 208 44.7
Cre02.g076850 Chlamydomonas reinhardtii HOM05D005790 ORTHO05D007464 4.0e-37 159.8 443 28.0
Lj4C790T17 Lonicera japonica HOM05D005790 ORTHO05D007464 1.2e-28 131.7 79 79.7
MD15G1017900 Malus domestica HOM05D005790 ORTHO05D007464 6.5e-27 125.9 226 37.6
MD15G1018000 Malus domestica HOM05D005790 ORTHO05D007464 6.5e-27 125.9 226 37.6
MCO14G170 Micromonas commoda HOM05D005790 ORTHO05D007464 4.2e-26 123.2 454 26.0
HPP92_020941 Vanilla planifolia HOM05D005790 ORTHO05D007464 1.1e-23 115.2 125 49.6
PRCOL_00000381 Prasinoderma coloniale HOM05D005790 ORTHO05D007832 3.7e-22 110.2 426 26.8
RcHm_v2.0_Chr6g0302301 Rosa chinensis HOM05D005790 ORTHO05D007464 1.1e-18 98.6 85 52.9
HPP92_020940 Vanilla planifolia HOM05D005790 ORTHO05D007464 1.1e-15 88.6 55 70.9
Cpa.g.sc140.30 Carica papaya HOM05D005790 ORTHO05D007464 1.5e-15 88.2 53 73.6
SEGI_12232 Sequoiadendron giganteum HOM05D005790 ORTHO05D007464 2.8e-14 84.0 59 57.6
TAR625G0591 Trochodendron aralioides HOM05D000460 ORTHO05D000333 8.2e-14 82.4 183 36.6
Hma1.2p1_1776F.1_g301940 Hydrangea macrophylla HOM05D005790 ORTHO05D007464 7.9e-09 65.9 41 75.6
EL10Ac5g11429 Beta vulgaris HOM05D003769 ORTHO05D004521 2.2e-06 57.8 362 21.3
CDE05G1505 Ceratophyllum demersum HOM05D005790 ORTHO05D007464 2.2e-06 57.8 41 61.0
COL.COLO4_38433 Corchorus olitorius HOM05D005790 ORTHO05D030850 2.8e-06 57.4 31 64.5
Aa31LG10G4900 Aethionema arabicum HOM05D003769 ORTHO05D004521 3.7e-06 57.0 287 22.0
VMungo0331G1008 Vigna mungo HOM05D005790 ORTHO05D007464 3.7e-06 57.0 29 75.9
RhsimUnG0148700 Rhododendron simsii HOM05D000113 ORTHO05D002571 6.3e-06 56.2 32 78.1
Gorai.005G199500 Gossypium raimondii HOM05D002561 ORTHO05D006466 8.2e-06 55.8 90 35.6
TPR.G40727 Trifolium pratense HOM05D005790 ORTHO05D007464 8.2e-06 55.8 46 56.5


User provided reference genes

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