Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C024442.2 Cucumis melo HOM05D001613 ORTHO05D001556 2.5e-100 369.0 216 100.0
CsaV3_7G035340 Cucumis sativus L. HOM05D001613 ORTHO05D001556 1.6e-54 216.9 162 86.4
ClCG09G000140 Citrullus lanatus HOM05D001613 ORTHO05D001556 8.1e-43 177.9 135 83.7
Sed0003694 Sechium edule HOM05D001613 ORTHO05D001556 4.2e-39 165.6 150 73.3
Sed0016073 Sechium edule HOM05D001613 ORTHO05D001556 1.0e-29 134.4 172 54.7
QL05p020351 Quercus lobata HOM05D001613 ORTHO05D001556 3.1e-18 96.3 187 34.2
Haze_15839 Corylus avellana HOM05D001613 ORTHO05D001556 3.4e-17 92.8 144 36.1
Cfa003655 Carpinus fangiana HOM05D006831 ORTHO05D008256 1.4e-15 87.4 146 48.6
CiPaw.01G232100 Carya illinoinensis HOM05D001613 ORTHO05D001556 3.2e-15 86.3 144 37.5
Prupe.3G060300 Prunus persica HOM05D001613 ORTHO05D001556 3.2e-15 86.3 140 37.9
MD09G1204600 Malus domestica HOM05D001613 ORTHO05D001556 4.2e-15 85.9 140 40.0
RcHm_v2.0_Chr2g0140241 Rosa chinensis HOM05D001613 ORTHO05D001556 2.1e-14 83.6 138 34.8
PGR102G0547 Punica granatum HOM05D001613 ORTHO05D001556 3.5e-14 82.8 138 37.7
Carub.0001s1497 Capsella rubella HOM05D001613 ORTHO05D001556 4.6e-14 82.4 173 35.3
QL02p071875 Quercus lobata HOM05D001613 ORTHO05D001556 7.9e-14 81.6 167 32.9
FAN19G1996 Fragaria x ananassa HOM05D001613 ORTHO05D001556 3.9e-13 79.3 146 34.9
FAN02G0574 Fragaria x ananassa HOM05D001613 ORTHO05D001556 1.5e-12 77.4 143 32.9
FvH4_6g32283 Fragaria vesca HOM05D001613 ORTHO05D001556 1.9e-12 77.0 150 32.7
FAN05G5700 Fragaria x ananassa HOM05D001613 ORTHO05D001556 1.9e-12 77.0 143 32.9
AL1G27300 Arabidopsis lyrata HOM05D001613 ORTHO05D001556 3.3e-12 76.3 147 35.4
AT1G15215 Arabidopsis thaliana HOM05D001613 ORTHO05D001556 4.3e-12 75.9 157 33.8
BcaC05g25450 Brassica carinata HOM05D001613 ORTHO05D001556 4.8e-11 72.4 172 32.0
FAN14G5448 Fragaria x ananassa HOM05D001613 ORTHO05D001556 4.8e-11 72.4 150 32.0
C05p13340 Brassica napus HOM05D001613 ORTHO05D001556 6.3e-11 72.0 169 32.5
BolC5t30071H Brassica oleracea HOM05D001613 ORTHO05D001556 6.3e-11 72.0 169 32.5
Dinv30443 Davidia involucrata HOM05D001613 ORTHO05D001556 6.3e-11 72.0 145 31.0
Haze_06254 Corylus avellana HOM05D006831 ORTHO05D008256 1.1e-10 71.2 66 50.0
Sp1g13530 Schrenkiella parvula HOM05D001613 ORTHO05D001556 1.1e-10 71.2 147 35.4
Atru.chr1.3516 Acer truncatum HOM05D001613 ORTHO05D001556 1.4e-10 70.9 143 32.9
Eucgr.F03070 Eucalyptus grandis HOM05D001613 ORTHO05D001556 1.4e-10 70.9 146 32.2
THA.LOC104812527 Tarenaya hassleriana HOM05D001613 ORTHO05D001556 1.4e-10 70.9 161 31.7
GSVIVG01017001001 Vitis vinifera HOM05D001613 ORTHO05D001556 1.4e-10 70.9 139 33.8
Gohir.A10G066200 Gossypium hirsutum HOM05D001613 ORTHO05D001556 1.8e-10 70.5 147 32.7
Gorai.011G072000 Gossypium raimondii HOM05D001613 ORTHO05D001556 1.8e-10 70.5 147 32.7
Gohir.D10G067500 Gossypium hirsutum HOM05D001613 ORTHO05D001556 2.4e-10 70.1 147 32.0
Duzib192G0362 Durio zibethinus HOM05D001613 ORTHO05D001556 3.1e-10 69.7 153 33.3
Dinv37983 Davidia involucrata HOM05D001613 ORTHO05D001556 4.1e-10 69.3 60 50.0
Cc04_g02640 Coffea canephora HOM05D001613 ORTHO05D001556 5.3e-10 68.9 144 32.6
A06p11210 Brassica napus HOM05D001613 ORTHO05D001556 9.0e-10 68.2 169 30.8
BraA06t24301Z Brassica rapa HOM05D001613 ORTHO05D001556 9.0e-10 68.2 169 30.8
Hma1.2p1_1056F.1_g252630 Hydrangea macrophylla HOM05D001613 ORTHO05D001556 9.0e-10 68.2 148 29.1
Thhalv10008534m.g Eutrema salsugineum HOM05D001613 ORTHO05D001556 1.2e-09 67.8 147 32.0
vmacro17016 Vaccinium macrocarpon HOM05D001613 ORTHO05D001556 1.2e-09 67.8 147 29.9
vmacro17020 Vaccinium macrocarpon HOM05D001613 ORTHO05D001556 1.2e-09 67.8 147 29.9
Actinidia09005 Actinidia chinensis HOM05D001613 ORTHO05D001556 1.5e-09 67.4 77 41.6
TWI75G1867 Tripterygium wilfordii HOM05D001613 ORTHO05D001556 2.0e-09 67.0 148 31.8
Aa31LG7G20 Aethionema arabicum HOM05D001613 ORTHO05D001556 3.4e-09 66.2 141 32.6
Cfa013383 Carpinus fangiana HOM05D001613 ORTHO05D001556 3.4e-09 66.2 138 30.4
Oeu026793.1 Olea europaea HOM05D001613 ORTHO05D001556 3.4e-09 66.2 68 45.6
Potri.001G189200 Populus trichocarpa HOM05D001613 ORTHO05D001556 3.4e-09 66.2 141 30.5
Sabra01G0151900 Salix brachista HOM05D001613 ORTHO05D001556 4.5e-09 65.9 158 28.5
CANSAT01G1609 Cannabis sativa HOM05D001613 ORTHO05D001556 7.6e-09 65.1 61 50.8
CANSAT01G1940 Cannabis sativa HOM05D001613 ORTHO05D001556 7.6e-09 65.1 61 50.8
Sc12g0009740 Simmondsia chinensis HOM05D001613 ORTHO05D001556 7.6e-09 65.1 143 31.5
Actinidia39137 Actinidia chinensis HOM05D001613 ORTHO05D001556 1.7e-08 63.9 162 30.2
arahy.Tifrunner.gnm1.ann1.440ZV2 Arachis hypogaea HOM05D001613 ORTHO05D001556 1.7e-08 63.9 176 27.8
arahy.Tifrunner.gnm1.ann1.ARI2AB Arachis hypogaea HOM05D001613 ORTHO05D001556 1.7e-08 63.9 176 27.8
Ca_23253_v3 Cicer arietinum L. HOM05D001613 ORTHO05D001556 2.2e-08 63.5 177 26.6
Lj5A54T62 Lonicera japonica HOM05D001613 ORTHO05D001556 3.8e-08 62.8 148 28.4
FvH4_1g07250 Fragaria vesca HOM05D001613 ORTHO05D001556 5.0e-08 62.4 156 30.8
SGA_v2.0_scaffold66G22536 Striga asiatica HOM05D001613 ORTHO05D008256 5.0e-08 62.4 67 38.8
Peaxi162Scf00699g00021 Petunia axillaris HOM05D001613 ORTHO05D001556 6.5e-08 62.0 176 28.4
Lsat_1_v5_gn_1_37000 Lactuca sativa HOM05D001613 ORTHO05D001556 8.5e-08 61.6 157 29.9
TWI18G1193 Tripterygium wilfordii HOM05D001613 ORTHO05D001556 8.5e-08 61.6 146 32.2
Actinidia32698 Actinidia chinensis HOM05D001613 ORTHO05D001556 1.4e-07 60.8 61 45.9
Ciclev10026320m.g Citrus clementina HOM05D001613 ORTHO05D001556 1.4e-07 60.8 149 30.2
Nitab4.5_0009505g0010 Nicotiana tabacum HOM05D001613 ORTHO05D001556 1.4e-07 60.8 144 28.5
Haze_21907 Corylus avellana HOM05D001613 ORTHO05D001556 2.5e-07 60.1 134 30.6
Manes.04G133600 Manihot esculenta HOM05D001613 ORTHO05D001556 2.5e-07 60.1 130 31.5
Migut.I00902 Erythranthe guttata HOM05D001613 ORTHO05D001556 3.2e-07 59.7 60 41.7
Nitab4.5_0001755g0130 Nicotiana tabacum HOM05D001613 ORTHO05D001556 3.2e-07 59.7 152 28.9
Rhsim12G0202800 Rhododendron simsii HOM05D001613 ORTHO05D001556 3.2e-07 59.7 147 27.9
TPR.G32251 Trifolium pratense HOM05D001613 ORTHO05D001556 3.2e-07 59.7 139 28.1
Dinv23386 Davidia involucrata HOM05D001613 ORTHO05D001556 5.5e-07 58.9 76 39.5
Potri.018G046200 Populus trichocarpa HOM05D001613 ORTHO05D001556 7.2e-07 58.5 139 35.3
Hund06660 Selenicereus undatus HOM05D001613 ORTHO05D001556 7.2e-07 58.5 138 28.3
TAR626G0213 Trochodendron aralioides HOM05D001613 ORTHO05D001556 7.2e-07 58.5 138 29.0
CARHR015740 Cardamine hirsuta HOM05D001613 ORTHO05D001556 9.3e-07 58.2 151 30.5
CiPaw.07G202400 Carya illinoinensis HOM05D001613 ORTHO05D001556 9.3e-07 58.2 138 28.3
Dinv27919 Davidia involucrata HOM05D001613 ORTHO05D001556 1.6e-06 57.4 138 31.2
Actinidia21707 Actinidia chinensis HOM05D001613 ORTHO05D001556 2.1e-06 57.0 61 41.0
Hma1.2p1_0154F.1_g068100 Hydrangea macrophylla HOM05D001613 ORTHO05D001556 2.1e-06 57.0 138 29.7
MSTRG.22643 Avicennia marina HOM05D001613 ORTHO05D001556 2.7e-06 56.6 69 40.6
CAN.G20.22 Capsicum annuum HOM05D001613 ORTHO05D001556 2.7e-06 56.6 176 29.5
Medtr8g014075 Medicago truncatula HOM05D001613 ORTHO05D001556 2.7e-06 56.6 139 28.8
PGR044G2336 Punica granatum HOM05D001613 ORTHO05D001556 2.7e-06 56.6 149 29.5
SalBow2G1143 Salvia bowleyana HOM05D001613 ORTHO05D001556 2.7e-06 56.6 60 41.7
Ciclev10009238m.g Citrus clementina HOM05D001613 ORTHO05D001556 3.6e-06 56.2 138 29.7
TAR624G0413 Trochodendron aralioides HOM05D001613 ORTHO05D001556 6.1e-06 55.5 138 26.8
Hma1.2p1_0049F.1_g028400 Hydrangea macrophylla HOM05D001613 ORTHO05D001556 7.9e-06 55.1 177 26.6


User provided reference genes

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