Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C022290.2 Cucumis melo HOM05D004422 ORTHO05D007331 0.0e+00 2090.1 1069 100.0
CsaV3_6G008710 Cucumis sativus L. HOM05D004422 ORTHO05D007331 0.0e+00 2035.4 1069 97.0
ClCG06G002430 Citrullus lanatus HOM05D004422 ORTHO05D007331 0.0e+00 1912.5 1092 90.9
Sed0020409 Sechium edule HOM05D004422 ORTHO05D007331 0.0e+00 1897.9 1071 90.6
CiPaw.14G020100 Carya illinoinensis HOM05D004422 ORTHO05D007331 0.0e+00 1642.5 1072 76.5
Thecc.01G395500 Theobroma cacao HOM05D004422 ORTHO05D007331 0.0e+00 1637.5 1072 76.1
QL10p000960 Quercus lobata HOM05D004422 ORTHO05D007331 0.0e+00 1624.8 1075 76.2
GSVIVG01018288001 Vitis vinifera HOM05D004422 ORTHO05D007331 0.0e+00 1624.4 1073 75.3
Gohir.A08G029300 Gossypium hirsutum HOM05D004422 ORTHO05D007331 0.0e+00 1620.1 1073 75.1
Atru.chr5.121 Acer truncatum HOM05D004422 ORTHO05D007331 0.0e+00 1619.4 1075 76.0
Potri.014G049200 Populus trichocarpa HOM05D004422 ORTHO05D007331 0.0e+00 1617.8 1079 75.7
Manes.05G055300 Manihot esculenta HOM05D004422 ORTHO05D007331 0.0e+00 1614.4 1069 76.0
Gohir.D08G040000 Gossypium hirsutum HOM05D004422 ORTHO05D007331 0.0e+00 1613.2 1073 74.9
RcHm_v2.0_Chr1g0348021 Rosa chinensis HOM05D004422 ORTHO05D007331 0.0e+00 1612.4 1073 76.1
Gorai.004G038800 Gossypium raimondii HOM05D004422 ORTHO05D007331 0.0e+00 1611.3 1073 74.7
CSS0020521 Camellia sinensis var. sinensis HOM05D004422 ORTHO05D007331 0.0e+00 1598.6 1072 74.7
MD07G1109400 Malus domestica HOM05D004422 ORTHO05D007331 0.0e+00 1592.4 1075 74.1
CANSAT25G3675 Cannabis sativa HOM05D004422 ORTHO05D007331 0.0e+00 1587.0 1073 74.4
CANSAT25G3884 Cannabis sativa HOM05D004422 ORTHO05D007331 0.0e+00 1583.5 1072 74.3
Sabra14G0035000 Salix brachista HOM05D004422 ORTHO05D007331 0.0e+00 1581.6 1085 73.6
TWI59G1250 Tripterygium wilfordii HOM05D004422 ORTHO05D007331 0.0e+00 1581.2 1070 73.6
Haze_02852 Corylus avellana HOM05D004422 ORTHO05D007331 0.0e+00 1573.9 1115 72.6
Rhsim07G0036300 Rhododendron simsii HOM05D004422 ORTHO05D007331 0.0e+00 1570.4 1073 73.3
FAN03G1687 Fragaria x ananassa HOM05D004422 ORTHO05D007331 0.0e+00 1569.7 1072 74.3
FAN01G0685 Fragaria x ananassa HOM05D004422 ORTHO05D007331 0.0e+00 1565.8 1072 73.9
Ca_25801_v3 Cicer arietinum L. HOM05D004422 ORTHO05D007331 0.0e+00 1558.9 1069 72.6
Lj3g0007750 Lotus japonicus HOM05D004422 ORTHO05D007331 0.0e+00 1553.9 1076 72.0
FAN06G3830 Fragaria x ananassa HOM05D004422 ORTHO05D007331 0.0e+00 1553.5 1072 73.9
Nn1g00835 Nelumbo nucifera HOM05D004422 ORTHO05D007331 0.0e+00 1552.0 1074 72.6
Lalb_Chr07g0195401 Lupinus albus HOM05D004422 ORTHO05D007331 0.0e+00 1549.6 1074 72.3
Psat4g224760 Pisum sativum HOM05D004422 ORTHO05D007331 0.0e+00 1548.5 1000 75.4
PSO782G5506 Papaver somniferum HOM05D004422 ORTHO05D007331 0.0e+00 1543.1 1073 71.9
HanXRQChr16g0521111 Helianthus annuus HOM05D004422 ORTHO05D007331 0.0e+00 1536.5 1077 71.3
Aqoxy5G04133 Aquilegia oxysepala HOM05D004422 ORTHO05D007331 0.0e+00 1534.6 1074 70.9
THA.LOC104816999 Tarenaya hassleriana HOM05D004422 ORTHO05D007331 0.0e+00 1533.5 1072 71.6
Medtr8g006955 Medicago truncatula HOM05D004422 ORTHO05D007331 0.0e+00 1531.5 1078 71.3
Dinv43612 Davidia involucrata HOM05D004422 ORTHO05D007331 0.0e+00 1525.4 1095 71.2
EL10Ac7g18223 Beta vulgaris HOM05D004422 ORTHO05D007331 0.0e+00 1523.1 1077 71.4
Actinidia18350 Actinidia chinensis HOM05D004422 ORTHO05D007331 0.0e+00 1517.7 1072 71.6
Migut.B01531 Erythranthe guttata HOM05D004422 ORTHO05D007331 0.0e+00 1516.1 1078 71.2
Eucgr.H04784 Eucalyptus grandis HOM05D004422 ORTHO05D007331 0.0e+00 1514.6 1083 71.1
AL5G27440 Arabidopsis lyrata HOM05D004422 ORTHO05D007331 0.0e+00 1511.5 1068 70.4
ECA234G0959 Erigeron canadensis HOM05D004422 ORTHO05D007331 0.0e+00 1508.0 1072 70.7
Lsat_1_v5_gn_4_39461 Lactuca sativa HOM05D004422 ORTHO05D007331 0.0e+00 1505.7 1085 69.3
AT3G48110 Arabidopsis thaliana HOM05D004422 ORTHO05D007331 0.0e+00 1505.0 1075 70.2
AUR62025581 Chenopodium quinoa HOM05D004422 ORTHO05D007331 0.0e+00 1498.4 1088 69.2
Thhalv10018047m.g Eutrema salsugineum HOM05D004422 ORTHO05D007331 0.0e+00 1498.4 1076 70.4
MSTRG.20687 Avicennia marina HOM05D004422 ORTHO05D007331 0.0e+00 1496.9 1079 69.7
Duzib268G0035 Durio zibethinus HOM05D004422 ORTHO05D007331 0.0e+00 1496.5 1076 70.9
Cfa011065 Carpinus fangiana HOM05D004422 ORTHO05D007331 0.0e+00 1490.3 1072 71.2
Solyc01g090200.4 Solanum lycopersicum HOM05D004422 ORTHO05D007331 0.0e+00 1484.5 1069 69.5
Sopen01g035990 Solanum pennellii HOM05D004422 ORTHO05D007331 0.0e+00 1483.4 1069 69.6
Prupe.2G132400 Prunus persica HOM05D004422 ORTHO05D007331 0.0e+00 1481.8 948 77.1
BraA07t30542Z Brassica rapa HOM05D004422 ORTHO05D007331 0.0e+00 1474.9 1076 69.5
A07p29020 Brassica napus HOM05D004422 ORTHO05D007331 0.0e+00 1474.1 1076 69.4
Sc12g0011040 Simmondsia chinensis HOM05D004422 ORTHO05D007331 0.0e+00 1473.8 971 74.9
C06p32790 Brassica napus HOM05D004422 ORTHO05D007331 0.0e+00 1472.2 1073 69.4
BolC6t38401H Brassica oleracea HOM05D004422 ORTHO05D007331 0.0e+00 1469.5 1074 69.5
Cc02_g25150 Coffea canephora HOM05D004422 ORTHO05D007331 0.0e+00 1463.7 1042 70.3
Lj7C547G5 Lonicera japonica HOM05D004422 ORTHO05D007331 0.0e+00 1457.6 1148 65.9
BcaB02g07011 Brassica carinata HOM05D004422 ORTHO05D007331 0.0e+00 1456.4 1095 67.8
SGA_v2.0_scaffold52G19227 Striga asiatica HOM05D004422 ORTHO05D007331 0.0e+00 1453.7 1161 64.8
Hund18610 Selenicereus undatus HOM05D004422 ORTHO05D007331 0.0e+00 1450.3 1078 68.4
Ciclev10018701m.g Citrus clementina HOM05D004422 ORTHO05D007331 0.0e+00 1446.0 1071 69.5
arahy.Tifrunner.gnm1.ann1.NVW2FV Arachis hypogaea HOM05D004422 ORTHO05D007331 0.0e+00 1442.2 998 72.1
Phvul.010G049401 Phaseolus vulgaris HOM05D004422 ORTHO05D007331 0.0e+00 1439.5 947 74.9
Ah.15g094660 Amaranthus hybridus HOM05D004422 ORTHO05D007331 0.0e+00 1424.1 1223 62.3
AUR62001366 Chenopodium quinoa HOM05D004422 ORTHO05D007331 0.0e+00 1421.0 988 71.0
Dinv44059 Davidia involucrata HOM05D004422 ORTHO05D007331 0.0e+00 1406.7 946 75.1
Zm00001eb379480 Zea mays HOM05D004422 ORTHO05D007331 0.0e+00 1400.2 1069 66.5
Oeu000053.1 Olea europaea HOM05D004422 ORTHO05D007331 0.0e+00 1399.8 965 72.4
Os06g0103600 Oryza sativa ssp. japonica HOM05D004422 ORTHO05D007331 0.0e+00 1393.6 1013 68.5
SGA_v2.0_scaffold340G49325 Striga asiatica HOM05D004422 ORTHO05D007331 0.0e+00 1384.4 1096 65.7
DCAR_029470 Daucus carota HOM05D004422 ORTHO05D007331 0.0e+00 1375.5 980 70.2
ATR0057G028 Amborella trichopoda HOM05D004422 ORTHO05D007331 0.0e+00 1373.2 1002 69.2
HPP92_002531 Vanilla planifolia HOM05D004422 ORTHO05D007331 0.0e+00 1332.8 978 67.5
FvH4_7g10270 Fragaria vesca HOM05D004422 ORTHO05D007331 0.0e+00 1305.4 868 75.3
Mapoly0186s0003 Marchantia polymorpha HOM05D004422 ORTHO05D007331 0.0e+00 1258.4 1000 63.0
Aa31LG1G11470 Aethionema arabicum HOM05D004422 ORTHO05D007331 0.0e+00 1257.3 1091 61.3
Sp5g30300 Schrenkiella parvula HOM05D004422 ORTHO05D007331 0.0e+00 1254.2 888 71.3
AagrBONN_evm.TU.Sc2ySwM_117.3818 Anthoceros agrestis HOM05D004422 ORTHO05D007331 0.0e+00 1250.3 1025 61.2
Nitab4.5_0000920g0050 Nicotiana tabacum HOM05D004422 ORTHO05D007331 0.0e+00 1250.0 1192 57.5
Pp3c1_42870 Physcomitrium patens HOM05D004422 ORTHO05D007331 0.0e+00 1216.1 1073 59.0
Peaxi162Scf00475g00041 Petunia axillaris HOM05D004422 ORTHO05D007331 0.0e+00 1208.7 1121 58.3
SalBow5G1783 Salvia bowleyana HOM05D004422 ORTHO05D007331 0.0e+00 1179.1 969 64.5
CBR_g19146 Chara braunii HOM05D004422 ORTHO05D007331 0.0e+00 1141.3 1006 56.4
unitig_0.g1355 Utricularia gibba HOM05D004422 ORTHO05D007331 0.0e+00 1083.2 1138 52.9
TAR375G0830 Trochodendron aralioides HOM05D004422 ORTHO05D007331 6.5e-303 1044.3 662 77.6
PRCOL_00000491 Prasinoderma coloniale HOM05D004422 ORTHO05D007331 3.6e-301 1038.5 1012 54.2
CARHR156840 Cardamine hirsuta HOM05D004422 ORTHO05D007331 9.8e-291 1003.8 751 65.6
Nitab4.5_0002685g0030 Nicotiana tabacum HOM05D004422 ORTHO05D007331 6.2e-285 984.6 1100 51.4
TPR.G33119 Trifolium pratense HOM05D004422 ORTHO05D007331 1.8e-284 983.0 998 53.3
Cre10.g433000 Chlamydomonas reinhardtii HOM05D004422 ORTHO05D007331 5.2e-284 981.5 1021 50.9
MCO03G257 Micromonas commoda HOM05D004422 ORTHO05D007331 2.9e-282 975.7 1030 50.2
Glyma.03G110500 Glycine max HOM05D004422 ORTHO05D007331 2.4e-257 892.9 595 75.3
Carub.0005s1421 Capsella rubella HOM05D004422 ORTHO05D007331 1.2e-251 874.0 620 71.1
arahy.Tifrunner.gnm1.ann1.Q83G00 Arachis hypogaea HOM05D004422 ORTHO05D007331 1.5e-214 750.7 500 76.4
CAN.G1473.2 Capsicum annuum HOM05D004422 ORTHO05D007331 7.7e-211 738.4 584 62.3
QL09p024682 Quercus lobata HOM05D004422 ORTHO05D007331 8.5e-194 681.8 518 67.4
Cpa.g.sc22.56 Carica papaya HOM05D004422 ORTHO05D007331 1.5e-190 671.0 472 69.5
QL04p030045 Quercus lobata HOM05D004422 ORTHO05D007331 5.0e-186 656.0 619 56.7
COL.COLO4_07156 Corchorus olitorius HOM05D004422 ORTHO05D007331 3.0e-183 646.7 813 49.2
CDE02G3124 Ceratophyllum demersum HOM05D004422 ORTHO05D007331 3.4e-174 616.7 460 67.4
Cpa.g.sc22.52 Carica papaya HOM05D004422 ORTHO05D007331 3.7e-173 613.2 381 81.6
vmacro13500 Vaccinium macrocarpon HOM05D004422 ORTHO05D007331 5.6e-169 599.4 624 56.4
Carub.0005s1422 Capsella rubella HOM05D004422 ORTHO05D007331 2.2e-165 587.4 410 70.0
VMungo0331G0292 Vigna mungo HOM05D000002 ORTHO05D000001 1.7e-157 561.2 397 68.8
VMungo0331G1046 Vigna mungo HOM05D004422 ORTHO05D007331 5.6e-145 519.6 353 76.8
FAN10G2373 Fragaria x ananassa HOM05D004422 ORTHO05D007331 8.7e-130 469.2 311 77.8
TPR.G13525 Trifolium pratense HOM05D004422 ORTHO05D007331 1.7e-125 454.9 329 69.0
CAN.G1497.17 Capsicum annuum HOM05D004422 ORTHO05D007331 1.9e-124 451.4 341 72.1
Glyma.03G111000 Glycine max HOM05D004422 ORTHO05D007331 1.0e-122 445.7 392 59.9
TAR375G0769 Trochodendron aralioides HOM05D004422 ORTHO05D007331 8.7e-122 442.6 285 75.4
CDE09G1442 Ceratophyllum demersum HOM05D004422 ORTHO05D007331 3.7e-112 410.6 294 68.7
COL.COLO4_30046 Corchorus olitorius HOM05D004422 ORTHO05D007331 8.8e-106 389.4 814 36.6
SEGI_38441 Sequoiadendron giganteum HOM05D004422 ORTHO05D007331 4.5e-102 377.1 211 85.3
COL.COLO4_07155 Corchorus olitorius HOM05D004422 ORTHO05D007331 1.8e-95 355.1 241 71.8
Haze_27357 Corylus avellana HOM05D004422 ORTHO05D007331 3.0e-82 311.2 292 51.4
CDE09G1306 Ceratophyllum demersum HOM05D004422 ORTHO05D007331 2.2e-80 305.1 219 73.1
Actinidia32507 Actinidia chinensis HOM05D004422 ORTHO05D007331 6.8e-58 230.3 174 72.4
SGA_v2.0_scaffold52G19231 Striga asiatica HOM05D004422 ORTHO05D030592 3.1e-50 204.9 146 68.5
HanXRQChr07g0189481 Helianthus annuus HOM05D004422 ORTHO05D021544 5.8e-49 200.7 185 56.8
QL04p030068 Quercus lobata HOM05D004422 ORTHO05D007331 3.7e-48 198.0 189 60.8
SEGI_08386 Sequoiadendron giganteum HOM05D004422 ORTHO05D007331 3.6e-43 181.4 150 61.3
COL.COLO4_33296 Corchorus olitorius HOM05D004422 ORTHO05D007331 4.6e-38 164.5 112 67.0
SEGI_38096 Sequoiadendron giganteum HOM05D004422 ORTHO05D030592 2.5e-36 158.7 136 61.8
SGA_v2.0_scaffold902G53711 Striga asiatica HOM05D004422 ORTHO05D030592 3.6e-35 154.8 109 68.8
SEGI_01066 Sequoiadendron giganteum HOM05D004422 ORTHO05D007331 2.6e-33 148.7 130 54.6
SEGI_36766 Sequoiadendron giganteum HOM05D004422 ORTHO05D013213 2.6e-33 148.7 125 58.4
Lsat_1_v5_gn_5_158961 Lactuca sativa HOM05D004422 ORTHO05D007331 1.1e-31 143.3 128 58.6
Psat7g148920 Pisum sativum HOM05D004422 ORTHO05D013213 3.0e-29 135.2 112 57.1
Aqoxy1G01621 Aquilegia oxysepala HOM05D004422 ORTHO05D007331 5.1e-29 134.4 90 65.6
FAN06G1066 Fragaria x ananassa HOM05D004422 ORTHO05D007331 1.1e-28 133.3 125 62.4
FAN10G4150 Fragaria x ananassa HOM05D004422 ORTHO05D007331 1.1e-28 133.3 125 62.4
HanXRQChr09g0251011 Helianthus annuus HOM05D004422 ORTHO05D021544 3.3e-28 131.7 94 68.1
HanXRQChr09g0251021 Helianthus annuus HOM05D004422 ORTHO05D021544 1.6e-27 129.4 203 37.9
arahy.Tifrunner.gnm1.ann1.Y7Q0ZL Arachis hypogaea HOM05D004422 ORTHO05D013213 2.4e-26 125.6 92 64.1
COL.COLO4_35716 Corchorus olitorius HOM05D004422 ORTHO05D157279 7.1e-23 114.0 192 38.0
arahy.Tifrunner.gnm1.ann1.SPAE12 Arachis hypogaea HOM05D004422 ORTHO05D021544 1.9e-20 105.9 73 68.5
Cpa.g.sc22.55 Carica papaya HOM05D004422 ORTHO05D013213 2.5e-20 105.5 73 67.1
HanXRQChr16g0520031 Helianthus annuus HOM05D004422 ORTHO05D021544 2.5e-20 105.5 99 52.5
SEGI_14209 Sequoiadendron giganteum HOM05D004422 ORTHO05D007331 1.6e-19 102.8 70 71.4
COL.COLO4_30045 Corchorus olitorius HOM05D004422 ORTHO05D007331 1.8e-18 99.4 67 68.7
Psat7g007000 Pisum sativum HOM05D004422 ORTHO05D013213 1.5e-17 96.3 132 41.7
Thecc.01G108300 Theobroma cacao HOM05D004422 ORTHO05D408993 9.6e-12 77.0 109 45.0
Lsat_1_v5_gn_4_171980 Lactuca sativa HOM05D004422 ORTHO05D002867 3.7e-11 75.1 54 66.7
TPR.G34724 Trifolium pratense HOM05D004422 ORTHO05D013213 2.6e-09 68.9 55 58.2
TPR.G22860 Trifolium pratense HOM05D004422 ORTHO05D013213 2.2e-08 65.9 60 61.7
TPR.G17647 Trifolium pratense HOM05D004422 ORTHO05D030592 2.9e-08 65.5 45 66.7
arahy.Tifrunner.gnm1.ann1.GNE3C0 Arachis hypogaea HOM05D004422 ORTHO05D013213 1.1e-07 63.5 48 62.5
arahy.Tifrunner.gnm1.ann1.HBQ2MY Arachis hypogaea HOM05D004422 ORTHO05D013213 1.1e-07 63.5 48 62.5
arahy.Tifrunner.gnm1.ann1.BJ0H8V Arachis hypogaea HOM05D004422 ORTHO05D013213 1.9e-07 62.8 48 62.5
arahy.Tifrunner.gnm1.ann1.C8N37A Arachis hypogaea HOM05D004422 ORTHO05D013213 2.5e-07 62.4 44 65.9
Psat7g007080 Pisum sativum HOM05D004422 ORTHO05D013213 2.5e-07 62.4 37 73.0
Thecc.04G201300 Theobroma cacao HOM05D004422 ORTHO05D001336 7.1e-07 60.8 35 74.3
arahy.Tifrunner.gnm1.ann1.15LB1A Arachis hypogaea HOM05D000228 ORTHO05D013213 9.3e-07 60.5 48 60.4
arahy.Tifrunner.gnm1.ann1.6S8N9S Arachis hypogaea HOM05D000228 ORTHO05D013213 1.6e-06 59.7 48 58.3
CAN.G1473.1 Capsicum annuum HOM05D004422 ORTHO05D013213 6.0e-06 57.8 61 47.5


User provided reference genes

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