Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C022237.2 Cucumis melo HOM05D005846 ORTHO05D007369 2.2e-170 603.6 704 100.0
CsaV3_6G009050 Cucumis sativus L. HOM05D005846 ORTHO05D007369 3.0e-127 460.3 573 80.1
Sed0022623 Sechium edule HOM05D005846 ORTHO05D007369 2.3e-95 354.4 254 79.1
ClCG06G002930 Citrullus lanatus HOM05D005846 ORTHO05D007369 7.0e-92 342.8 234 82.5
Prupe.2G134200 Prunus persica HOM05D005846 ORTHO05D007369 2.5e-89 334.3 252 73.8
MD07G1110700 Malus domestica HOM05D005846 ORTHO05D007369 4.3e-89 333.6 253 73.5
QL04p035021 Quercus lobata HOM05D005846 ORTHO05D007369 1.6e-88 331.6 251 72.9
CiPaw.06G031700 Carya illinoinensis HOM05D005846 ORTHO05D007369 2.8e-88 330.9 253 72.7
COL.COLO4_35176 Corchorus olitorius HOM05D005846 ORTHO05D007369 3.6e-88 330.5 252 73.0
Duzib116G0440 Durio zibethinus HOM05D005846 ORTHO05D007369 4.7e-88 330.1 250 72.8
Thecc.01G387400 Theobroma cacao HOM05D005846 ORTHO05D007369 1.4e-87 328.6 252 72.2
arahy.Tifrunner.gnm1.ann1.DPE9LE Arachis hypogaea HOM05D005846 ORTHO05D007369 3.1e-87 327.4 251 72.1
arahy.Tifrunner.gnm1.ann1.SA9NP4 Arachis hypogaea HOM05D005846 ORTHO05D007369 3.1e-87 327.4 251 72.1
Cfa011122 Carpinus fangiana HOM05D005846 ORTHO05D007369 6.8e-87 326.2 253 72.7
Dinv44098 Davidia involucrata HOM05D005846 ORTHO05D007369 8.9e-87 325.9 252 73.4
RcHm_v2.0_Chr1g0348261 Rosa chinensis HOM05D005846 ORTHO05D007369 8.9e-87 325.9 251 72.1
FAN03G1473 Fragaria x ananassa HOM05D005846 ORTHO05D007369 1.2e-86 325.5 251 71.3
FAN06G0321 Fragaria x ananassa HOM05D005846 ORTHO05D007369 1.2e-86 325.5 251 71.3
Potri.014G057000 Populus trichocarpa HOM05D005846 ORTHO05D007369 1.2e-86 325.5 248 73.0
FAN01G1706 Fragaria x ananassa HOM05D005846 ORTHO05D007369 1.5e-86 325.1 251 71.3
FAN10G4209 Fragaria x ananassa HOM05D005846 ORTHO05D007369 1.5e-86 325.1 251 71.3
Eucgr.D02512 Eucalyptus grandis HOM05D005846 ORTHO05D007369 2.6e-86 324.3 248 73.0
FAN10G1341 Fragaria x ananassa HOM05D005846 ORTHO05D007369 2.6e-86 324.3 251 71.3
HanXRQChr06g0168821 Helianthus annuus HOM05D005846 ORTHO05D007369 4.4e-86 323.6 251 70.9
GSVIVG01018216001 Vitis vinifera HOM05D005846 ORTHO05D007369 4.4e-86 323.6 252 70.2
Haze_02742 Corylus avellana HOM05D005846 ORTHO05D007369 9.8e-86 322.4 262 70.6
Rhsim02G0216700 Rhododendron simsii HOM05D005846 ORTHO05D007369 9.8e-86 322.4 252 71.0
TPR.G39153 Trifolium pratense HOM05D005846 ORTHO05D007369 9.8e-86 322.4 253 71.9
Medtr7g045280 Medicago truncatula HOM05D005846 ORTHO05D007369 1.7e-85 321.6 251 71.3
Phvul.007G143350 Phaseolus vulgaris HOM05D005846 ORTHO05D007369 1.7e-85 321.6 252 71.0
PGR004G1251 Punica granatum HOM05D005846 ORTHO05D007369 1.7e-85 321.6 251 70.9
TWI14G0811 Tripterygium wilfordii HOM05D005846 ORTHO05D007369 1.7e-85 321.6 251 71.3
FAN06G3163 Fragaria x ananassa HOM05D005846 ORTHO05D007369 2.2e-85 321.2 251 70.5
ECA236G0469 Erigeron canadensis HOM05D005846 ORTHO05D007369 2.9e-85 320.9 251 70.5
VMungo1383G2837 Vigna mungo HOM05D005846 ORTHO05D007369 3.7e-85 320.5 251 71.3
CANSAT21G1379 Cannabis sativa HOM05D005846 ORTHO05D007369 4.9e-85 320.1 252 70.2
Glyma.01G074700 Glycine max HOM05D005846 ORTHO05D007369 6.4e-85 319.7 253 71.1
Lj1g0009878 Lotus japonicus HOM05D005846 ORTHO05D007369 6.4e-85 319.7 253 70.8
Atru.chr5.196 Acer truncatum HOM05D005846 ORTHO05D007369 8.3e-85 319.3 249 71.5
Manes.05G051500 Manihot esculenta HOM05D005846 ORTHO05D007369 8.3e-85 319.3 246 73.2
Psat3g158120 Pisum sativum HOM05D005846 ORTHO05D007369 1.1e-84 318.9 253 71.1
CSS0006984 Camellia sinensis var. sinensis HOM05D005846 ORTHO05D007369 1.9e-84 318.2 252 71.0
Ca_26287_v3 Cicer arietinum L. HOM05D005846 ORTHO05D007369 1.9e-84 318.2 253 70.4
Lj9C561G11 Lonicera japonica HOM05D005846 ORTHO05D007369 1.9e-84 318.2 251 69.7
vmacro13469 Vaccinium macrocarpon HOM05D005846 ORTHO05D007369 2.4e-84 317.8 253 69.2
CSS0013945 Camellia sinensis var. sinensis HOM05D005846 ORTHO05D007369 3.2e-84 317.4 252 71.0
Gohir.D11G145600 Gossypium hirsutum HOM05D005846 ORTHO05D007369 4.1e-84 317.0 253 70.8
Glyma.11G162365 Glycine max HOM05D005846 ORTHO05D007369 3.5e-83 313.9 250 71.2
SGA_v2.0_scaffold52G19202 Striga asiatica HOM05D005846 ORTHO05D007369 3.5e-83 313.9 250 70.0
MBI05_g14240_MAGBIO Magnolia biondii HOM05D005846 ORTHO05D007369 7.8e-83 312.8 253 68.4
Gohir.A11G139400 Gossypium hirsutum HOM05D005846 ORTHO05D007369 1.3e-82 312.0 253 69.6
Actinidia22778 Actinidia chinensis HOM05D005846 ORTHO05D007369 1.7e-82 311.6 248 71.4
Actinidia22833 Actinidia chinensis HOM05D005846 ORTHO05D007369 1.7e-82 311.6 248 71.4
Ciclev10019079m.g Citrus clementina HOM05D005846 ORTHO05D007369 1.7e-82 311.6 485 64.1
Lalb_Chr19g0126671 Lupinus albus HOM05D005846 ORTHO05D007369 1.7e-82 311.6 253 69.2
Nitab4.5_0003110g0060 Nicotiana tabacum HOM05D005846 ORTHO05D007369 1.7e-82 311.6 247 69.6
Sabra14G0041600 Salix brachista HOM05D002053 ORTHO05D002135 3.0e-82 310.8 243 72.0
AL4G44100 Arabidopsis lyrata HOM05D005846 ORTHO05D007369 3.9e-82 310.5 252 68.3
Thhalv10001339m.g Eutrema salsugineum HOM05D005846 ORTHO05D007369 3.9e-82 310.5 252 67.9
Aqoxy5G03824 Aquilegia oxysepala HOM05D005846 ORTHO05D007369 5.1e-82 310.1 253 67.2
Gorai.007G156100 Gossypium raimondii HOM05D005846 ORTHO05D007369 5.1e-82 310.1 260 68.8
Sp4g27070 Schrenkiella parvula HOM05D005846 ORTHO05D007369 5.1e-82 310.1 252 67.9
Migut.B01566 Erythranthe guttata HOM05D005846 ORTHO05D007369 6.6e-82 309.7 252 68.7
Lsat_1_v5_gn_7_11161 Lactuca sativa HOM05D005846 ORTHO05D007369 6.6e-82 309.7 255 68.6
AT2G45000 Arabidopsis thaliana HOM05D005846 ORTHO05D007369 8.6e-82 309.3 252 68.3
Hund27391 Selenicereus undatus HOM05D005846 ORTHO05D007369 1.5e-81 308.5 247 70.0
Carub.0004s2760 Capsella rubella HOM05D005846 ORTHO05D007369 1.9e-81 308.1 252 67.9
DCAR_031886 Daucus carota HOM05D005846 ORTHO05D007369 1.9e-81 308.1 248 69.4
CARHR140260 Cardamine hirsuta HOM05D005846 ORTHO05D007369 2.5e-81 307.8 252 67.9
Solyc01g090670.3 Solanum lycopersicum HOM05D005846 ORTHO05D007369 2.5e-81 307.8 248 68.5
CAN.G899.26 Capsicum annuum HOM05D005846 ORTHO05D007369 3.3e-81 307.4 251 68.1
MSTRG.28219 Avicennia marina HOM05D005846 ORTHO05D007369 5.6e-81 306.6 251 68.5
BcaC02g12270 Brassica carinata HOM05D005846 ORTHO05D007369 7.3e-81 306.2 253 67.6
Cc02_g24740 Coffea canephora HOM05D005846 ORTHO05D007369 9.5e-81 305.8 252 67.5
Sopen01g036400 Solanum pennellii HOM05D005846 ORTHO05D007369 1.2e-80 305.4 248 68.1
BraA05t19484Z Brassica rapa HOM05D005846 ORTHO05D007369 1.6e-80 305.1 252 67.9
THA.LOC104802481 Tarenaya hassleriana HOM05D005846 ORTHO05D007369 1.6e-80 305.1 252 69.0
A05p05100 Brassica napus HOM05D005846 ORTHO05D007369 4.7e-80 303.5 253 67.2
C04p05950 Brassica napus HOM05D005846 ORTHO05D007369 6.2e-80 303.1 253 67.2
BolC4t22226H Brassica oleracea HOM05D005846 ORTHO05D007369 6.2e-80 303.1 253 67.2
Ah.05g173450 Amaranthus hybridus HOM05D005846 ORTHO05D007369 2.0e-78 298.1 245 68.2
PSO541G5798 Papaver somniferum HOM05D005846 ORTHO05D007369 9.9e-78 295.8 251 65.7
PSO675G5996 Papaver somniferum HOM05D005846 ORTHO05D007369 1.7e-77 295.0 251 65.3
Aa31LG1G26590 Aethionema arabicum HOM05D005846 ORTHO05D007369 3.2e-76 290.8 252 64.3
Peaxi162Scf00377g00722 Petunia axillaris HOM05D005846 ORTHO05D007369 1.6e-75 288.5 234 67.9
TAR375G0515 Trochodendron aralioides HOM05D005846 ORTHO05D007369 3.0e-74 284.3 221 71.5
EL10Ac1g00809 Beta vulgaris HOM05D005846 ORTHO05D007369 1.1e-73 282.3 241 66.4
CDE02G2440 Ceratophyllum demersum HOM05D005846 ORTHO05D007369 1.9e-73 281.6 252 62.3
unitig_26.g8879 Utricularia gibba HOM05D005846 ORTHO05D007369 5.6e-73 280.0 242 65.3
Nn6g33892 Nelumbo nucifera HOM05D005846 ORTHO05D007369 1.2e-72 278.9 232 67.7
CDE04G1707 Ceratophyllum demersum HOM05D005846 ORTHO05D007369 2.1e-72 278.1 252 60.3
FvH4_7g10470 Fragaria vesca HOM05D005846 ORTHO05D007369 3.6e-72 277.3 219 70.3
ATR0559G037 Amborella trichopoda HOM05D005846 ORTHO05D007369 1.8e-71 275.0 250 62.4
Oeu061505.1 Olea europaea HOM05D005846 ORTHO05D007369 1.4e-68 265.4 220 67.7
HanXRQChr04g0123471 Helianthus annuus HOM05D005846 ORTHO05D007369 1.9e-68 265.0 221 66.1
Zm00001eb367060 Zea mays HOM05D005846 ORTHO05D007369 1.4e-63 248.8 251 56.2
AagrBONN_evm.TU.Sc2ySwM_117.1077 Anthoceros agrestis HOM05D005846 ORTHO05D007369 6.9e-63 246.5 242 56.2
arahy.Tifrunner.gnm1.ann1.2XVX2B Arachis hypogaea HOM05D005846 ORTHO05D007369 2.6e-62 244.6 264 57.6
HPP92_027757 Vanilla planifolia HOM05D005846 ORTHO05D007369 5.8e-62 243.4 230 58.3
AUR62004139 Chenopodium quinoa HOM05D005846 ORTHO05D007369 3.8e-61 240.7 242 58.3
Mapoly0005s0221 Marchantia polymorpha HOM05D005846 ORTHO05D007369 1.4e-60 238.8 237 55.3
Pp3c15_14630 Physcomitrium patens HOM05D005846 ORTHO05D007369 1.2e-59 235.7 248 54.0
PGR004G1857 Punica granatum HOM05D005846 ORTHO05D007369 7.3e-57 226.5 195 66.2
AUR62013700 Chenopodium quinoa HOM05D005846 ORTHO05D007369 3.6e-56 224.2 227 58.6
Nitab4.5_0001823g0090 Nicotiana tabacum HOM05D005846 ORTHO05D007369 4.5e-54 217.2 174 69.5
Sc02g0002920 Simmondsia chinensis HOM05D005846 ORTHO05D007369 1.9e-52 211.8 217 58.1
CBR_g21126 Chara braunii HOM05D005846 ORTHO05D007369 1.7e-45 188.7 235 49.4
HPP92_002750 Vanilla planifolia HOM05D005846 ORTHO05D007369 9.6e-41 172.9 159 57.9
Atru.chr5.198 Acer truncatum HOM05D002424 ORTHO05D002640 3.5e-35 154.5 99 78.8
Os01g0856600 Oryza sativa ssp. japonica HOM05D005846 ORTHO05D007369 8.5e-29 133.3 120 59.2
QL04p035108 Quercus lobata HOM05D005846 ORTHO05D007369 2.0e-25 122.1 80 78.8
Cpa.g.sc22.4 Carica papaya HOM05D005846 ORTHO05D007369 1.4e-23 115.9 123 56.1
QL04p035237 Quercus lobata HOM05D005846 ORTHO05D007369 1.5e-22 112.5 77 76.6
Cre16.g677700 Chlamydomonas reinhardtii HOM05D005846 ORTHO05D007369 7.7e-22 110.2 227 34.4
arahy.Tifrunner.gnm1.ann1.V1AVP1 Arachis hypogaea HOM05D005846 ORTHO05D007369 1.0e-21 109.8 137 51.8
Cpa.g.sc22.5 Carica papaya HOM05D005846 ORTHO05D007369 2.3e-18 98.6 122 51.6
Atru.chr5.201 Acer truncatum HOM05D005846 ORTHO05D007369 1.5e-17 95.9 64 76.6
Lsat_1_v5_gn_4_126501 Lactuca sativa HOM05D005846 ORTHO05D007369 9.7e-17 93.2 64 73.4
PRCOL_00002612 Prasinoderma coloniale HOM05D005846 ORTHO05D007369 1.3e-16 92.8 240 31.7
HPP92_002751 Vanilla planifolia HOM05D005846 ORTHO05D007369 1.3e-16 92.8 58 74.1
HPP92_006013 Vanilla planifolia HOM05D005846 ORTHO05D007369 2.2e-16 92.0 111 47.7
QL05p084337 Quercus lobata HOM05D005846 ORTHO05D007369 2.8e-16 91.7 98 55.1
C09p68450 Brassica napus HOM05D005846 ORTHO05D007369 5.3e-15 87.4 84 58.3
HanXRQChr12g0364311 Helianthus annuus HOM05D005846 ORTHO05D007369 3.2e-12 78.2 54 68.5
HanXRQChr16g0530801 Helianthus annuus HOM05D005846 ORTHO05D007369 7.2e-12 77.0 53 71.7
A05p20700 Brassica napus HOM05D005846 ORTHO05D007369 9.4e-12 76.6 69 59.4
HanXRQChr01g0009681 Helianthus annuus HOM05D005846 ORTHO05D007369 9.4e-12 76.6 41 85.4
SalBow5G1215 Salvia bowleyana HOM05D005846 ORTHO05D007369 1.5e-09 69.3 58 69.0
MCO01G259 Micromonas commoda HOM05D005846 ORTHO05D007369 5.7e-09 67.4 129 34.1
MCO01G299 Micromonas commoda HOM05D005846 ORTHO05D007369 5.7e-09 67.4 129 34.1
BolC9t59592H Brassica oleracea HOM05D022734 ORTHO05D024517 2.4e-07 62.0 50 66.0
HanXRQChr12g0366671 Helianthus annuus HOM05D005846 ORTHO05D007369 5.3e-07 60.8 36 77.8
HanXRQChr02g0053971 Helianthus annuus HOM05D005846 ORTHO05D000176 1.2e-06 59.7 68 50.0


User provided reference genes

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