Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C021221.2 Cucumis melo HOM05D005745 ORTHO05D006857 3.6e-216 754.6 370 100.0
CsaV3_6G000430 Cucumis sativus L. HOM05D005745 ORTHO05D006857 9.6e-145 517.3 391 71.6
ClCG06G003860 Citrullus lanatus HOM05D005745 ORTHO05D006857 4.8e-128 461.8 391 65.2
Dinv43791 Davidia involucrata HOM05D005745 ORTHO05D006857 2.1e-99 366.7 360 55.8
Sed0009525 Sechium edule HOM05D005745 ORTHO05D006857 2.3e-98 363.2 357 58.0
QL08p049437 Quercus lobata HOM05D005745 ORTHO05D006857 5.2e-98 362.1 389 52.7
Cfa003949 Carpinus fangiana HOM05D000683 ORTHO05D000507 1.3e-96 357.5 391 52.4
Haze_15472 Corylus avellana HOM05D005745 ORTHO05D006857 4.1e-95 352.4 442 48.9
Actinidia20926 Actinidia chinensis HOM05D005745 ORTHO05D006857 1.5e-92 344.0 415 48.4
Sabra14G0059300 Salix brachista HOM05D005745 ORTHO05D006857 1.5e-92 344.0 394 50.8
Actinidia10034 Actinidia chinensis HOM05D005745 ORTHO05D006857 1.0e-90 337.8 410 48.8
Hma1.2p1_0001F.1_g001520 Hydrangea macrophylla HOM05D005745 ORTHO05D006857 1.4e-90 337.4 418 48.1
Gohir.D12G109300 Gossypium hirsutum HOM05D005745 ORTHO05D006857 2.3e-90 336.7 348 53.4
Manes.01G259400 Manihot esculenta HOM05D005745 ORTHO05D006857 8.9e-90 334.7 398 49.0
CSS0024424 Camellia sinensis var. sinensis HOM05D005745 ORTHO05D006857 1.2e-89 334.3 387 50.6
GSVIVG01026870001 Vitis vinifera HOM05D005745 ORTHO05D006857 1.2e-89 334.3 441 48.1
FAN10G4182 Fragaria x ananassa HOM05D005745 ORTHO05D006857 1.5e-89 334.0 370 53.2
Gorai.008G118400 Gossypium raimondii HOM05D005745 ORTHO05D006857 2.0e-89 333.6 348 52.9
CSS0038489 Camellia sinensis var. sinensis HOM05D005745 ORTHO05D006857 9.8e-89 331.3 387 50.4
TAR367G0002 Trochodendron aralioides HOM05D005745 ORTHO05D006857 1.3e-88 330.9 417 46.5
MD01G1055100 Malus domestica HOM05D005745 ORTHO05D006857 2.9e-88 329.7 382 51.3
arahy.Tifrunner.gnm1.ann1.5YG8M2 Arachis hypogaea HOM05D005745 ORTHO05D006857 1.8e-87 327.0 388 49.5
FAN06G1549 Fragaria x ananassa HOM05D005745 ORTHO05D006857 3.2e-87 326.2 363 52.6
arahy.Tifrunner.gnm1.ann1.JLYP5G Arachis hypogaea HOM05D005745 ORTHO05D006857 9.2e-87 324.7 379 50.9
CANSAT56G0536 Cannabis sativa HOM05D005745 ORTHO05D006857 2.0e-86 323.6 390 50.3
Gohir.A12G105400 Gossypium hirsutum HOM05D005745 ORTHO05D006857 3.5e-86 322.8 348 52.6
Nn6g33496 Nelumbo nucifera HOM05D005745 ORTHO05D006857 5.9e-86 322.0 379 50.7
Cc02_g37770 Coffea canephora HOM05D005745 ORTHO05D006857 1.0e-85 321.2 391 47.3
Sc26g0000960 Simmondsia chinensis HOM05D005745 ORTHO05D006857 1.7e-85 320.5 371 50.7
CiPaw.02G029400 Carya illinoinensis HOM05D005745 ORTHO05D006857 5.0e-85 318.9 381 50.4
Ciclev10020429m.g Citrus clementina HOM05D005745 ORTHO05D006857 6.6e-85 318.5 379 49.1
Lj3g0021692 Lotus japonicus HOM05D005745 ORTHO05D006857 1.1e-84 317.8 368 52.4
Oeu056358.1 Olea europaea HOM05D005745 ORTHO05D006857 4.3e-84 315.8 378 49.7
BcaB03g13612 Brassica carinata HOM05D005745 ORTHO05D006857 7.3e-84 315.1 371 49.3
Cpa.g.sc18.234 Carica papaya HOM05D005745 ORTHO05D006857 7.3e-84 315.1 393 49.4
Rhsim07G0017300 Rhododendron simsii HOM05D000683 ORTHO05D000507 7.3e-84 315.1 391 48.1
TWI23G0914 Tripterygium wilfordii HOM05D005745 ORTHO05D006857 1.2e-83 314.3 426 45.5
MSTRG.17255 Avicennia marina HOM05D005745 ORTHO05D006857 3.6e-83 312.8 377 47.2
CARHR000560 Cardamine hirsuta HOM05D005745 ORTHO05D006857 3.6e-83 312.8 379 47.0
DCAR_015932 Daucus carota HOM05D005745 ORTHO05D006857 3.6e-83 312.8 382 46.9
Lalb_Chr04g0256771 Lupinus albus HOM05D005745 ORTHO05D006857 3.6e-83 312.8 396 49.5
vmacro13297 Vaccinium macrocarpon HOM05D005745 ORTHO05D006857 3.6e-83 312.8 430 44.2
Lsat_1_v5_gn_7_5060 Lactuca sativa HOM05D005745 ORTHO05D006857 2.3e-82 310.1 402 47.0
Eucgr.E00173 Eucalyptus grandis HOM05D005745 ORTHO05D006857 3.1e-82 309.7 383 47.3
Sp1g00540 Schrenkiella parvula HOM05D005745 ORTHO05D006857 3.1e-82 309.7 359 48.5
SGA_v2.0_scaffold277G46666 Striga asiatica HOM05D005745 ORTHO05D006857 4.0e-82 309.3 366 48.9
PGR042G0923 Punica granatum HOM05D005745 ORTHO05D006857 5.2e-82 308.9 381 49.1
Sopen05g028140 Solanum pennellii HOM05D005745 ORTHO05D006857 8.9e-82 308.1 387 48.8
ECA236G3051 Erigeron canadensis HOM05D005745 ORTHO05D006857 1.2e-81 307.8 408 45.6
Medtr8g031440 Medicago truncatula HOM05D005745 ORTHO05D006857 1.2e-81 307.8 360 51.7
Solyc05g048810.4 Solanum lycopersicum HOM05D005745 ORTHO05D006857 1.2e-81 307.8 383 49.6
Aqoxy7G00357 Aquilegia oxysepala HOM05D005745 ORTHO05D006857 1.5e-81 307.4 388 47.9
AT1G01760 Arabidopsis thaliana HOM05D005745 ORTHO05D006857 2.0e-81 307.0 362 48.6
Peaxi162Scf00191g01322 Petunia axillaris HOM05D005745 ORTHO05D006857 2.0e-81 307.0 375 49.3
THA.LOC104817020 Tarenaya hassleriana HOM05D005745 ORTHO05D006857 2.6e-81 306.6 385 47.5
PGSC0003DMG400021653 Solanum tuberosum HOM05D005745 ORTHO05D006857 7.5e-81 305.1 394 47.7
VMungo0331G1900 Vigna mungo HOM05D005745 ORTHO05D006857 7.5e-81 305.1 372 50.5
Lj7C516G5 Lonicera japonica HOM05D005745 ORTHO05D006857 2.9e-80 303.1 358 47.8
Eucgr.E00169 Eucalyptus grandis HOM05D005745 ORTHO05D006857 3.7e-80 302.8 383 46.0
PSO478G4474 Papaver somniferum HOM05D005745 ORTHO05D006857 3.7e-80 302.8 397 46.3
Thhalv10007725m.g Eutrema salsugineum HOM05D005745 ORTHO05D006857 8.3e-80 301.6 421 43.2
Ah.05g176680 Amaranthus hybridus HOM05D005745 ORTHO05D006857 1.1e-79 301.2 360 51.1
Duzib138G1514 Durio zibethinus HOM05D005745 ORTHO05D006857 1.1e-79 301.2 347 51.3
AL1G10580 Arabidopsis lyrata HOM05D005745 ORTHO05D006857 1.4e-79 300.8 362 48.1
CAN.G1535.1 Capsicum annuum HOM05D005745 ORTHO05D006857 1.4e-79 300.8 385 47.8
Aa31LG1G11130 Aethionema arabicum HOM05D005745 ORTHO05D006857 1.9e-79 300.4 420 45.0
Nitab4.5_0007346g0010 Nicotiana tabacum HOM05D005745 ORTHO05D006857 1.9e-79 300.4 395 46.3
CiPaw.02G029100 Carya illinoinensis HOM05D005745 ORTHO05D006857 3.2e-79 299.7 381 48.6
EL10Ac1g00543 Beta vulgaris HOM05D005745 ORTHO05D006857 4.1e-79 299.3 393 47.6
A10p00280 Brassica napus HOM05D005745 ORTHO05D006857 1.6e-78 297.4 375 46.9
AUR62033312 Chenopodium quinoa HOM05D005745 ORTHO05D006857 1.6e-78 297.4 381 47.2
AUR62033347 Chenopodium quinoa HOM05D005745 ORTHO05D006857 2.0e-78 297.0 381 47.0
PSO782G5186 Papaver somniferum HOM05D005745 ORTHO05D006857 2.0e-78 297.0 391 45.5
BolC5t28819H Brassica oleracea HOM05D005745 ORTHO05D006857 4.6e-78 295.8 394 46.2
Carub.0001s0045 Capsella rubella HOM05D005745 ORTHO05D006857 6.0e-78 295.4 351 48.7
Lalb_Chr10g0097191 Lupinus albus HOM05D005745 ORTHO05D006857 6.0e-78 295.4 363 48.5
Potri.014G081400 Populus trichocarpa HOM05D005745 ORTHO05D006857 1.7e-77 293.9 360 48.9
Hund27291 Selenicereus undatus HOM05D005745 ORTHO05D006857 3.9e-77 292.7 413 44.3
C05p00290 Brassica napus HOM05D005745 ORTHO05D006857 1.9e-76 290.4 407 44.0
AUR62004330 Chenopodium quinoa HOM05D005745 ORTHO05D006857 2.5e-76 290.0 371 47.4
HanXRQChr04g0121611 Helianthus annuus HOM05D005745 ORTHO05D006857 7.3e-76 288.5 347 49.6
BraA10t42305Z Brassica rapa HOM05D005745 ORTHO05D006857 2.1e-75 287.0 398 44.5
HPP92_001499 Vanilla planifolia HOM05D005745 ORTHO05D006857 1.2e-70 271.2 362 46.1
Nitab4.5_0002262g0010 Nicotiana tabacum HOM05D005745 ORTHO05D006857 4.6e-70 269.2 334 47.9
CiPaw.02G029200 Carya illinoinensis HOM05D005745 ORTHO05D006857 5.6e-68 262.3 363 46.6
RcHm_v2.0_Chr1g0354081 Rosa chinensis HOM05D005745 ORTHO05D006857 2.0e-65 253.8 398 43.2
FAN03G1898 Fragaria x ananassa HOM05D005745 ORTHO05D006857 5.8e-65 252.3 370 44.6
CDE06G1611 Ceratophyllum demersum HOM05D005745 ORTHO05D006857 7.6e-65 251.9 357 44.3
MBI17_g21972_MAGBIO Magnolia biondii HOM05D005745 ORTHO05D006857 2.9e-64 250.0 331 46.8
Prupe.2G164800 Prunus persica HOM05D005745 ORTHO05D006857 2.9e-64 250.0 330 46.4
Ca_23656_v3 Cicer arietinum L. HOM05D005745 ORTHO05D006857 1.7e-61 240.7 322 46.9
Zm00001eb067600 Zea mays HOM05D005745 ORTHO05D006857 2.3e-61 240.4 347 43.5
MBI18_g01486_MAGBIO Magnolia biondii HOM05D005745 ORTHO05D006857 1.5e-60 237.7 344 44.5
Gohir.A12G105450 Gossypium hirsutum HOM05D005745 ORTHO05D006857 2.1e-59 233.8 288 48.3
Atru.BG.56.p Acer truncatum HOM05D005745 ORTHO05D006857 8.1e-59 231.9 309 46.9
FvH4_7g13861 Fragaria vesca HOM05D005745 ORTHO05D006857 1.2e-57 228.0 192 61.5
Glyma.07G073300 Glycine max HOM05D005745 ORTHO05D006857 5.8e-57 225.7 294 48.0
TPR.G39633 Trifolium pratense HOM05D005745 ORTHO05D006857 9.9e-57 224.9 183 61.7
Psat4g154320 Pisum sativum HOM05D005745 ORTHO05D006857 3.9e-53 213.0 183 59.0
Phvul.010G096200 Phaseolus vulgaris HOM05D005745 ORTHO05D006857 1.4e-50 204.5 184 56.0
Mapoly0023s0060 Marchantia polymorpha HOM05D005745 ORTHO05D006857 4.9e-48 196.1 461 32.3
AagrBONN_evm.TU.Sc2ySwM_362.160 Anthoceros agrestis HOM05D005745 ORTHO05D006857 1.4e-47 194.5 412 35.2
FAN06G0933 Fragaria x ananassa HOM05D005745 ORTHO05D006857 3.2e-47 193.4 254 48.4
unitig_26.g9734 Utricularia gibba HOM05D005745 ORTHO05D006857 2.1e-46 190.7 317 39.4
AUR62003100 Chenopodium quinoa HOM05D005745 ORTHO05D006857 3.5e-46 189.9 186 52.2
Os04g0683500 Oryza sativa ssp. japonica HOM05D005745 ORTHO05D006857 8.7e-45 185.3 280 41.8
Pp3c4_14060 Physcomitrium patens HOM05D005745 ORTHO05D006857 5.6e-44 182.6 515 30.1
AUR62034353 Chenopodium quinoa HOM05D005745 ORTHO05D006857 3.6e-43 179.9 183 51.9
Thecc.01G362500 Theobroma cacao HOM05D005745 ORTHO05D006857 4.0e-42 176.4 208 51.4
Zm00001eb420790 Zea mays HOM05D005745 ORTHO05D006857 1.7e-40 171.0 184 48.4
ATR0594G105 Amborella trichopoda HOM05D005745 ORTHO05D006857 3.8e-40 169.9 187 50.3
Glyma.03G013600 Glycine max HOM05D005745 ORTHO05D006857 1.1e-39 168.3 173 52.6
Zm00001eb191880 Zea mays HOM05D009386 ORTHO05D006857 1.1e-36 158.3 184 47.8
Prupe.2G165000 Prunus persica HOM05D005745 ORTHO05D006857 1.8e-34 151.0 345 36.2
SMO266G0032 Selaginella moellendorffii HOM05D005745 ORTHO05D006857 1.2e-30 138.3 238 39.1
Glyma.03G013550 Glycine max HOM05D005745 ORTHO05D006857 5.1e-29 132.9 92 73.9
SHI13462 Sapria himalayana HOM05D005745 ORTHO05D006857 9.6e-28 128.6 83 74.7
TPR.G4413 Trifolium pratense HOM05D005745 ORTHO05D006857 8.2e-27 125.6 82 76.8
EL10Ac7g17708 Beta vulgaris HOM05D005745 ORTHO05D006857 2.4e-26 124.0 82 78.0
Oeu056356.1 Olea europaea HOM05D005745 ORTHO05D006857 5.3e-26 122.9 82 75.6
Oeu056357.1 Olea europaea HOM05D005745 ORTHO05D006857 1.5e-25 121.3 102 61.8
SEGI_32011 Sequoiadendron giganteum HOM05D005745 ORTHO05D006857 2.0e-25 120.9 133 47.4
SEGI_32349 Sequoiadendron giganteum HOM05D005745 ORTHO05D006857 1.0e-24 118.6 321 29.6
Zm00001eb442120 Zea mays HOM05D009386 ORTHO05D006857 1.0e-24 118.6 90 62.2
COL.COLO4_12683 Corchorus olitorius HOM05D000683 ORTHO05D000507 3.8e-24 116.7 118 51.7
MD07G1140200 Malus domestica HOM05D005745 ORTHO05D006857 1.1e-23 115.2 296 34.1
AUR62019766 Chenopodium quinoa HOM05D005745 ORTHO05D006857 8.7e-21 105.5 98 50.0
MCO02G004 Micromonas commoda HOM05D005745 ORTHO05D006857 1.9e-20 104.4 428 28.0
PRCOL_00000230 Prasinoderma coloniale HOM05D005745 ORTHO05D006857 2.2e-19 100.9 420 27.6
FAN01G0854 Fragaria x ananassa HOM05D005745 ORTHO05D006857 2.8e-19 100.5 115 53.0
CBR_g12518 Chara braunii HOM05D004914 ORTHO05D006512 3.7e-19 100.1 89 61.8
AUR62034238 Chenopodium quinoa HOM05D002177 ORTHO05D002257 1.3e-16 91.7 122 42.6
Cre14.g629283 Chlamydomonas reinhardtii HOM05D005745 ORTHO05D006857 2.7e-14 84.0 90 54.4
Atru.chr5.475 Acer truncatum HOM05D005745 ORTHO05D006857 3.9e-13 80.1 88 51.1
Prupe.2G164500 Prunus persica HOM05D005745 ORTHO05D006857 5.7e-12 76.3 80 52.5


User provided reference genes

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