Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C020973.2 Cucumis melo HOM05D006162 ORTHO05D007627 1.7e-154 549.3 269 100.0
ClCG02G000880 Citrullus lanatus HOM05D006162 ORTHO05D007627 3.6e-141 505.0 270 91.5
CsaV3_2G017830 Cucumis sativus L. HOM05D006162 ORTHO05D007627 3.6e-141 505.0 308 84.7
Sed0011946 Sechium edule HOM05D006162 ORTHO05D007627 1.1e-105 387.1 271 73.8
QL06p031367 Quercus lobata HOM05D006162 ORTHO05D007627 2.0e-62 243.4 276 50.7
Thecc.07G145700 Theobroma cacao HOM05D006162 ORTHO05D007627 2.6e-62 243.0 269 49.4
Cfa002788 Carpinus fangiana HOM05D006162 ORTHO05D007627 7.4e-62 241.5 274 50.7
Duzib187G0444 Durio zibethinus HOM05D006162 ORTHO05D007627 1.3e-58 230.7 269 48.0
MD01G1015800 Malus domestica HOM05D006162 ORTHO05D007627 8.5e-58 228.0 271 46.5
RcHm_v2.0_Chr2g0118111 Rosa chinensis HOM05D006162 ORTHO05D007627 1.4e-57 227.3 274 48.2
Gohir.D13G156100 Gossypium hirsutum HOM05D006162 ORTHO05D007627 1.0e-55 221.1 274 46.7
Gohir.A13G151700 Gossypium hirsutum HOM05D006162 ORTHO05D007627 1.4e-55 220.7 274 46.7
Prupe.6G165900 Prunus persica HOM05D006162 ORTHO05D007627 1.8e-55 220.3 269 46.5
Gorai.013G176700 Gossypium raimondii HOM05D006162 ORTHO05D007627 3.0e-55 219.5 274 46.7
Dinv05774 Davidia involucrata HOM05D006162 ORTHO05D007627 6.7e-55 218.4 275 46.5
Ciclev10025253m.g Citrus clementina HOM05D006162 ORTHO05D007627 2.2e-53 213.4 270 44.8
Manes.12G145600 Manihot esculenta HOM05D006162 ORTHO05D007627 4.8e-53 212.2 268 43.3
FAN28G1724 Fragaria x ananassa HOM05D006162 ORTHO05D007627 1.2e-51 207.6 270 41.5
Haze_25085 Corylus avellana HOM05D006162 ORTHO05D007627 2.0e-51 206.8 340 41.5
Phvul.002G267600 Phaseolus vulgaris HOM05D006162 ORTHO05D007627 2.0e-51 206.8 283 42.0
TWI79G1464 Tripterygium wilfordii HOM05D006162 ORTHO05D007627 3.5e-51 206.1 276 43.5
FAN23G1837 Fragaria x ananassa HOM05D006162 ORTHO05D007627 1.3e-50 204.1 270 41.1
COL.COLO4_17421 Corchorus olitorius HOM05D000398 ORTHO05D007627 2.9e-50 203.0 264 43.6
Potri.007G077100 Populus trichocarpa HOM05D006162 ORTHO05D007627 4.2e-49 199.1 267 43.1
VMungo0251G2144 Vigna mungo HOM05D006162 ORTHO05D007627 1.2e-48 197.6 286 42.3
GSVIVG01022265001 Vitis vinifera HOM05D006162 ORTHO05D007627 2.7e-48 196.4 277 45.1
Glyma.08G145100 Glycine max HOM05D006162 ORTHO05D007627 8.0e-48 194.9 290 41.4
arahy.Tifrunner.gnm1.ann1.2PK97N Arachis hypogaea HOM05D006162 ORTHO05D007627 1.4e-47 194.1 273 42.5
arahy.Tifrunner.gnm1.ann1.QP02N2 Arachis hypogaea HOM05D006162 ORTHO05D007627 1.4e-47 194.1 268 42.5
Glyma.05G186500 Glycine max HOM05D006162 ORTHO05D007627 1.4e-47 194.1 290 42.1
Medtr8g092350 Medicago truncatula HOM05D006162 ORTHO05D007627 3.0e-47 193.0 282 42.9
TAR625G0476 Trochodendron aralioides HOM05D006162 ORTHO05D007627 8.8e-47 191.4 281 41.6
FAN19G1907 Fragaria x ananassa HOM05D006162 ORTHO05D007627 2.0e-46 190.3 268 40.3
Ca_17673_v3 Cicer arietinum L. HOM05D006162 ORTHO05D007627 5.7e-46 188.7 278 42.4
EL10Ac6g15232 Beta vulgaris HOM05D006162 ORTHO05D007627 7.5e-46 188.3 276 40.9
CSS0015273 Camellia sinensis var. sinensis HOM05D006162 ORTHO05D007627 1.7e-45 187.2 277 42.2
Lj4g0017392 Lotus japonicus HOM05D006162 ORTHO05D007627 4.8e-45 185.7 278 39.6
Rhsim08G0004700 Rhododendron simsii HOM05D006162 ORTHO05D007627 1.4e-44 184.1 274 41.6
TPR.G2184 Trifolium pratense HOM05D006162 ORTHO05D007627 1.4e-44 184.1 280 41.4
Peaxi162Scf00025g03226 Petunia axillaris HOM05D006162 ORTHO05D007627 1.8e-44 183.7 278 41.7
SGA_v2.0_scaffold2G01268 Striga asiatica HOM05D006162 ORTHO05D007627 4.1e-44 182.6 267 41.9
Hund19624 Selenicereus undatus HOM05D006162 ORTHO05D007627 7.0e-44 181.8 272 38.6
Cc07_g16680 Coffea canephora HOM05D006162 ORTHO05D007627 1.2e-43 181.0 283 39.9
HanXRQChr14g0446061 Helianthus annuus HOM05D006162 ORTHO05D007627 1.6e-43 180.6 271 41.0
Nitab4.5_0007426g0010 Nicotiana tabacum HOM05D006162 ORTHO05D007627 3.5e-43 179.5 275 40.4
Solyc04g051410.4 Solanum lycopersicum HOM05D006162 ORTHO05D007627 3.5e-43 179.5 283 39.2
Nitab4.5_0000184g0020 Nicotiana tabacum HOM05D006162 ORTHO05D007627 1.3e-42 177.6 284 40.8
Sopen04g022820 Solanum pennellii HOM05D006162 ORTHO05D007627 1.7e-42 177.2 283 38.9
Atru.chr4.715 Acer truncatum HOM05D006162 ORTHO05D007627 3.8e-42 176.0 226 45.1
Aa31LG6G15910 Aethionema arabicum HOM05D006162 ORTHO05D007627 1.1e-41 174.5 268 39.6
ECA238G0813 Erigeron canadensis HOM05D006162 ORTHO05D007627 1.5e-41 174.1 271 39.1
Aqoxy6G00404 Aquilegia oxysepala HOM05D006162 ORTHO05D007627 1.9e-41 173.7 282 41.1
Migut.H02454 Erythranthe guttata HOM05D006162 ORTHO05D007627 2.5e-41 173.3 267 40.4
Psat7g049400 Pisum sativum HOM05D006162 ORTHO05D007627 4.2e-41 172.6 274 40.5
CiPaw.03G131500 Carya illinoinensis HOM05D006162 ORTHO05D007627 5.5e-41 172.2 266 42.1
Oeu001984.1 Olea europaea HOM05D006162 ORTHO05D007627 2.1e-40 170.2 262 39.7
PGSC0003DMG400019694 Solanum tuberosum HOM05D006162 ORTHO05D007627 2.1e-40 170.2 275 39.3
vmacro18055 Vaccinium macrocarpon HOM05D006162 ORTHO05D007627 3.6e-40 169.5 260 41.9
AUR62003642 Chenopodium quinoa HOM05D006162 ORTHO05D007627 6.1e-40 168.7 276 38.4
FAN26G3317 Fragaria x ananassa HOM05D006162 ORTHO05D007627 3.0e-39 166.4 278 38.5
Lsat_1_v5_gn_2_67341 Lactuca sativa HOM05D006162 ORTHO05D007627 3.0e-39 166.4 274 37.6
Sc16g0004090 Simmondsia chinensis HOM05D006162 ORTHO05D007627 5.2e-39 165.6 263 39.9
CAN.G452.13 Capsicum annuum HOM05D006162 ORTHO05D007627 6.8e-39 165.2 275 37.8
Nn5g27123 Nelumbo nucifera HOM05D006162 ORTHO05D007627 6.8e-39 165.2 280 37.9
THA.LOC104824832 Tarenaya hassleriana HOM05D006162 ORTHO05D007627 8.8e-39 164.9 276 36.6
Ah.02g123760 Amaranthus hybridus HOM05D006162 ORTHO05D007627 3.4e-38 162.9 276 37.3
MBI17_g27203_MAGBIO Magnolia biondii HOM05D006162 ORTHO05D007627 3.4e-38 162.9 284 36.6
Eucgr.H04890 Eucalyptus grandis HOM05D006162 ORTHO05D007627 4.4e-38 162.5 274 37.2
PGR102G2965 Punica granatum HOM05D006162 ORTHO05D007627 9.1e-36 154.8 272 37.9
BcaB03g12289 Brassica carinata HOM05D006162 ORTHO05D007627 2.3e-34 150.2 269 34.6
A08p23610 Brassica napus HOM05D006162 ORTHO05D007627 2.9e-34 149.8 269 34.9
unitig_899.g14618 Utricularia gibba HOM05D006162 ORTHO05D007627 5.0e-34 149.1 265 37.7
BraA08t34318Z Brassica rapa HOM05D006162 ORTHO05D007627 8.6e-34 148.3 269 34.6
CDE08G0720 Ceratophyllum demersum HOM05D006162 ORTHO05D007627 1.1e-33 147.9 276 34.8
BcaC01g00286 Brassica carinata HOM05D006162 ORTHO05D007627 1.9e-33 147.1 271 35.8
C03p77810 Brassica napus HOM05D006162 ORTHO05D007627 1.9e-33 147.1 271 35.8
Sp7g36490 Schrenkiella parvula HOM05D006162 ORTHO05D007627 4.2e-33 146.0 273 34.1
AT4G39370 Arabidopsis thaliana HOM05D006162 ORTHO05D007627 9.5e-33 144.8 272 33.5
CANSAT01G0187 Cannabis sativa HOM05D006162 ORTHO05D007627 2.8e-32 143.3 271 38.0
Thhalv10025021m.g Eutrema salsugineum HOM05D006162 ORTHO05D007627 3.6e-32 142.9 269 33.5
HPP92_009257 Vanilla planifolia HOM05D006162 ORTHO05D007627 4.7e-32 142.5 270 34.4
BolC3t20037H Brassica oleracea HOM05D006162 ORTHO05D007627 3.0e-31 139.8 279 34.8
AL7G11390 Arabidopsis lyrata HOM05D006162 ORTHO05D007627 6.8e-31 138.7 269 33.5
Carub.0007s0129 Capsella rubella HOM05D006162 ORTHO05D007627 1.2e-30 137.9 268 34.3
FvH4_1g23260 Fragaria vesca HOM05D006162 ORTHO05D007627 1.5e-30 137.5 134 50.0
ATR0584G096 Amborella trichopoda HOM05D006162 ORTHO05D007627 2.4e-28 130.2 282 33.3
Lalb_Chr13g0296301 Lupinus albus HOM05D006162 ORTHO05D007627 7.0e-28 128.6 221 38.9
Sabra07G0065000 Salix brachista HOM05D006162 ORTHO05D007627 9.2e-28 128.3 268 32.8
Cpa.g.sc72.51 Carica papaya HOM05D006162 ORTHO05D000563 1.7e-26 124.0 200 40.0
AUR62017952 Chenopodium quinoa HOM05D006162 ORTHO05D007627 2.3e-26 123.6 229 36.2
AUR62044023 Chenopodium quinoa HOM05D006162 ORTHO05D007627 2.3e-26 123.6 229 36.2
Zm00001eb082910 Zea mays HOM05D006162 ORTHO05D007627 5.6e-25 119.0 265 33.2
Nn5g27122 Nelumbo nucifera HOM05D006162 ORTHO05D007627 2.3e-23 113.6 205 36.6
PSO675G6781 Papaver somniferum HOM05D006162 ORTHO05D007627 2.3e-23 113.6 259 30.9
Lj1g0027635 Lotus japonicus HOM05D006162 ORTHO05D007627 3.0e-23 113.2 98 55.1
Nitab4.5_0005242g0040 Nicotiana tabacum HOM05D006162 ORTHO05D007627 3.0e-23 113.2 95 53.7
PSO541G4150 Papaver somniferum HOM05D006162 ORTHO05D007627 4.0e-23 112.8 259 31.3
SEGI_22619 Sequoiadendron giganteum HOM05D006162 ORTHO05D007627 4.4e-22 109.4 380 26.1
Lj1g0016947 Lotus japonicus HOM05D006162 ORTHO05D007627 5.7e-22 109.0 98 54.1
Lj4A860G2 Lonicera japonica HOM05D006162 ORTHO05D007627 4.1e-20 102.8 245 29.8
DCAR_011464 Daucus carota HOM05D006162 ORTHO05D007627 3.1e-15 86.7 73 57.5
Hma1.2p1_0220F.1_g092950 Hydrangea macrophylla HOM05D006162 ORTHO05D007627 3.1e-15 86.7 74 55.4
Pp3c18_18540 Physcomitrium patens HOM05D006162 ORTHO05D007627 2.0e-14 84.0 389 25.4
SMO340G0295 Selaginella moellendorffii HOM05D006162 ORTHO05D007627 6.0e-11 72.4 72 52.8
Cpa.g.sc72.50 Carica papaya HOM05D006162 ORTHO05D007627 1.3e-10 71.2 52 55.8
Mapoly0008s0182 Marchantia polymorpha HOM05D006162 ORTHO05D007627 6.6e-10 68.9 194 27.3
Duzib212G0883 Durio zibethinus HOM05D003912 ORTHO05D004409 8.6e-10 68.6 81 44.4
Lalb_Chr13g0296311 Lupinus albus HOM05D006162 ORTHO05D007627 1.9e-09 67.4 54 50.0
Thecc.04G203100 Theobroma cacao HOM05D003912 ORTHO05D004409 3.3e-09 66.6 81 44.4
HPP92_013626 Vanilla planifolia HOM05D003912 ORTHO05D004409 3.3e-09 66.6 82 43.9
Atru.chr4.714 Acer truncatum HOM05D006162 ORTHO05D007627 5.6e-09 65.9 51 54.9
AUR62020827 Chenopodium quinoa HOM05D003912 ORTHO05D004409 7.3e-09 65.5 82 39.0
DCAR_011465 Daucus carota HOM05D006162 ORTHO05D007627 9.5e-09 65.1 85 41.2
Eucgr.H02776 Eucalyptus grandis HOM05D003912 ORTHO05D004409 1.2e-08 64.7 81 44.4
Nn1g07894 Nelumbo nucifera HOM05D003912 ORTHO05D004409 1.6e-08 64.3 81 46.9
Gohir.D02G124000 Gossypium hirsutum HOM05D003912 ORTHO05D004409 2.1e-08 63.9 81 43.2
Gorai.005G130100 Gossypium raimondii HOM05D003912 ORTHO05D004409 2.1e-08 63.9 81 43.2
Manes.15G054100 Manihot esculenta HOM05D003912 ORTHO05D004409 2.1e-08 63.9 78 44.9
AUR62018591 Chenopodium quinoa HOM05D003912 ORTHO05D004409 3.6e-08 63.2 82 37.8
Nitab4.5_0007416g0010 Nicotiana tabacum HOM05D003912 ORTHO05D004409 8.1e-08 62.0 78 44.9
Nitab4.5_0006297g0020 Nicotiana tabacum HOM05D003912 ORTHO05D004409 1.1e-07 61.6 78 44.9
CAN.G1635.11 Capsicum annuum HOM05D003912 ORTHO05D004409 1.4e-07 61.2 78 44.9
Haze_11613 Corylus avellana HOM05D003912 ORTHO05D004409 1.4e-07 61.2 74 43.2
Manes.03G147300 Manihot esculenta HOM05D003912 ORTHO05D004409 1.8e-07 60.8 228 25.9
QL06p025007 Quercus lobata HOM05D003912 ORTHO05D004409 2.3e-07 60.5 73 41.1
SEGI_05196 Sequoiadendron giganteum HOM05D003912 ORTHO05D004409 2.3e-07 60.5 76 39.5
Thhalv10006716m.g Eutrema salsugineum HOM05D003912 ORTHO05D004409 3.1e-07 60.1 75 48.0
Nitab4.5_0002260g0180 Nicotiana tabacum HOM05D003912 ORTHO05D004409 3.1e-07 60.1 72 44.4
ECA233G4597 Erigeron canadensis HOM05D003912 ORTHO05D004409 4.0e-07 59.7 228 25.9
Potri.017G055600 Populus trichocarpa HOM05D003912 ORTHO05D004409 5.2e-07 59.3 78 38.5
arahy.Tifrunner.gnm1.ann1.2BAE9R Arachis hypogaea HOM05D003912 ORTHO05D004409 6.8e-07 58.9 72 47.2
CSS0014108 Camellia sinensis var. sinensis HOM05D003912 ORTHO05D004409 6.8e-07 58.9 78 38.5
Oeu049032.1 Olea europaea HOM05D003912 ORTHO05D004409 6.8e-07 58.9 73 41.1
Peaxi162Scf00047g00430 Petunia axillaris HOM05D003912 ORTHO05D004409 6.8e-07 58.9 74 44.6
Sabra17G0047100 Salix brachista HOM05D003912 ORTHO05D004409 6.8e-07 58.9 79 40.5
Solyc09g091930.3 Solanum lycopersicum HOM05D003912 ORTHO05D004409 6.8e-07 58.9 78 42.3
Sopen09g034830 Solanum pennellii HOM05D003912 ORTHO05D004409 6.8e-07 58.9 78 42.3
Carub.0004s1415 Capsella rubella HOM05D003912 ORTHO05D004409 8.9e-07 58.5 75 45.3
Cc03_g07890 Coffea canephora HOM05D003912 ORTHO05D004409 8.9e-07 58.5 74 43.2
Oeu055784.1 Olea europaea HOM05D003912 ORTHO05D004409 8.9e-07 58.5 72 41.7
PGSC0003DMG400031289 Solanum tuberosum HOM05D003912 ORTHO05D004409 8.9e-07 58.5 78 42.3
AL1G14580 Arabidopsis lyrata HOM05D003912 ORTHO05D004409 1.2e-06 58.2 74 43.2
AT2G32780 Arabidopsis thaliana HOM05D003912 ORTHO05D004409 1.2e-06 58.2 75 44.0
arahy.Tifrunner.gnm1.ann1.1SB5R1 Arachis hypogaea HOM05D003912 ORTHO05D004409 1.2e-06 58.2 72 47.2
EL10Ac1g01993 Beta vulgaris HOM05D003912 ORTHO05D004409 1.2e-06 58.2 76 36.8
Ciclev10004226m.g Citrus clementina HOM05D003912 ORTHO05D004409 1.2e-06 58.2 74 45.9
FvH4_4g16490 Fragaria vesca HOM05D003912 ORTHO05D004409 1.5e-06 57.8 72 41.7
Lj6C552G3 Lonicera japonica HOM05D003912 ORTHO05D004409 1.5e-06 57.8 74 44.6
CiPaw.01G120700 Carya illinoinensis HOM05D003912 ORTHO05D004409 2.0e-06 57.4 74 41.9
FAN12G1567 Fragaria x ananassa HOM05D003912 ORTHO05D004409 2.0e-06 57.4 72 41.7
Zm00001eb102350 Zea mays HOM05D003912 ORTHO05D004409 2.0e-06 57.4 83 41.0
MCO01G654 Micromonas commoda HOM05D001091 ORTHO05D003478 2.6e-06 57.0 267 22.8
SGA_v2.0_scaffold626G53246 Striga asiatica HOM05D003912 ORTHO05D004409 2.6e-06 57.0 76 40.8
AT1G04860 Arabidopsis thaliana HOM05D003912 ORTHO05D004409 3.4e-06 56.6 74 41.9
CAN.G765.21 Capsicum annuum HOM05D003912 ORTHO05D004409 3.4e-06 56.6 86 39.5
FAN22G2235 Fragaria x ananassa HOM05D003912 ORTHO05D004409 3.4e-06 56.6 72 40.3
Nitab4.5_0003502g0040 Nicotiana tabacum HOM05D003912 ORTHO05D004409 3.4e-06 56.6 85 38.8
Psat5g101840 Pisum sativum HOM05D003912 ORTHO05D004409 3.4e-06 56.6 72 38.9
C08p52040 Brassica napus HOM05D003912 ORTHO05D004409 4.4e-06 56.2 74 40.5
BolC8t52736H Brassica oleracea HOM05D003912 ORTHO05D004409 4.4e-06 56.2 74 40.5
FAN17G2369 Fragaria x ananassa HOM05D003912 ORTHO05D004409 4.4e-06 56.2 72 40.3
Os09g0505100 Oryza sativa ssp. japonica HOM05D003912 ORTHO05D004409 4.4e-06 56.2 78 39.7
THA.LOC104801027 Tarenaya hassleriana HOM05D003912 ORTHO05D004409 4.4e-06 56.2 78 39.7
TAR629G2137 Trochodendron aralioides HOM05D001091 ORTHO05D001020 4.4e-06 56.2 74 33.8
AL4G28230 Arabidopsis lyrata HOM05D003912 ORTHO05D004409 5.8e-06 55.8 75 42.7
AT1G32850 Arabidopsis thaliana HOM05D001091 ORTHO05D001020 5.8e-06 55.8 80 31.2
BcaB03g13468 Brassica carinata HOM05D003912 ORTHO05D004409 5.8e-06 55.8 74 41.9
BcaC07g42158 Brassica carinata HOM05D003912 ORTHO05D004409 5.8e-06 55.8 74 40.5
FAN07G1879 Fragaria x ananassa HOM05D003912 ORTHO05D004409 5.8e-06 55.8 72 40.3
Lsat_1_v5_gn_1_72160 Lactuca sativa HOM05D003912 ORTHO05D004409 5.8e-06 55.8 75 40.0
Medtr3g083600 Medicago truncatula HOM05D003912 ORTHO05D004409 5.8e-06 55.8 72 44.4
PGR083G0566 Punica granatum HOM05D003912 ORTHO05D004409 5.8e-06 55.8 78 39.7
TWI09G1517 Tripterygium wilfordii HOM05D003912 ORTHO05D004409 5.8e-06 55.8 77 39.0
EL10Ac2g03910 Beta vulgaris HOM05D003912 ORTHO05D004409 7.5e-06 55.5 77 35.1
A09p33500 Brassica napus HOM05D001091 ORTHO05D001020 7.5e-06 55.5 77 32.5
C05p32320 Brassica napus HOM05D001091 ORTHO05D001020 7.5e-06 55.5 77 32.5
BolC5t31964H Brassica oleracea HOM05D001091 ORTHO05D001020 7.5e-06 55.5 77 32.5
BraA09t38892Z Brassica rapa HOM05D001091 ORTHO05D001020 7.5e-06 55.5 77 32.5
Duzib068G0645 Durio zibethinus HOM05D001091 ORTHO05D001020 7.5e-06 55.5 77 31.2
Glyma.11G256600 Glycine max HOM05D003912 ORTHO05D004409 7.5e-06 55.5 74 41.9
MD13G1284700 Malus domestica HOM05D003912 ORTHO05D004409 7.5e-06 55.5 74 37.8
PRCOL_00006193 Prasinoderma coloniale HOM05D000344 ORTHO05D000934 7.5e-06 55.5 254 24.4
Lj6g0024996 Lotus japonicus HOM05D003912 ORTHO05D004409 9.9e-06 55.1 72 41.7
Prupe.1G008700 Prunus persica HOM05D003912 ORTHO05D004409 9.9e-06 55.1 72 40.3
Sp1g03710 Schrenkiella parvula HOM05D003912 ORTHO05D004409 9.9e-06 55.1 74 41.9
SEGI_16543 Sequoiadendron giganteum HOM05D003912 ORTHO05D004409 9.9e-06 55.1 76 36.8
TPR.G19333 Trifolium pratense HOM05D003912 ORTHO05D004409 9.9e-06 55.1 72 40.3


User provided reference genes

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