Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C020924.2 Cucumis melo HOM05D006010 ORTHO05D007381 2.9e-155 552.0 303 100.0
CsaV3_2G017210 Cucumis sativus L. HOM05D006010 ORTHO05D007381 9.3e-146 520.4 306 93.5
Sed0022983 Sechium edule HOM05D006010 ORTHO05D007381 3.0e-120 435.6 307 79.2
Sed0003139 Sechium edule HOM05D006010 ORTHO05D007381 1.3e-118 430.3 312 78.8
ClCG05G010670 Citrullus lanatus HOM05D006010 ORTHO05D007381 2.8e-118 429.1 305 79.7
CiPaw.03G074500 Carya illinoinensis HOM05D006010 ORTHO05D007381 2.8e-89 332.8 332 60.2
Prupe.2G048000 Prunus persica HOM05D006010 ORTHO05D007381 8.6e-83 311.2 309 61.2
Ca_05962_v3 Cicer arietinum L. HOM05D006010 ORTHO05D007381 3.3e-82 309.3 323 58.5
Lj4g0009716 Lotus japonicus HOM05D006010 ORTHO05D007381 1.6e-81 307.0 308 60.1
Actinidia35721 Actinidia chinensis HOM05D006010 ORTHO05D007381 2.3e-80 303.1 341 57.2
MD02G1273300 Malus domestica HOM05D006010 ORTHO05D007381 2.3e-80 303.1 310 58.7
FAN19G0427 Fragaria x ananassa HOM05D006010 ORTHO05D007381 1.5e-79 300.4 307 57.0
FvH4_1g30030 Fragaria vesca HOM05D006010 ORTHO05D007381 1.3e-78 297.4 307 56.7
Sed0026765 Sechium edule HOM05D006010 ORTHO05D007381 2.2e-78 296.6 301 60.5
Lalb_Chr10g0104261 Lupinus albus HOM05D006010 ORTHO05D007381 1.1e-77 294.3 331 54.7
Hma1.2p1_0249F.1_g102390 Hydrangea macrophylla HOM05D006010 ORTHO05D007381 7.0e-77 291.6 310 58.7
Cfa007784 Carpinus fangiana HOM05D006010 ORTHO05D007381 9.2e-77 291.2 327 56.3
Psat2g045640 Pisum sativum HOM05D006010 ORTHO05D007381 9.2e-77 291.2 329 57.4
Haze_14288 Corylus avellana HOM05D006010 ORTHO05D007381 1.2e-76 290.8 327 56.3
RcHm_v2.0_Chr3g0492111 Rosa chinensis HOM05D006010 ORTHO05D007381 2.0e-76 290.0 311 55.6
arahy.Tifrunner.gnm1.ann1.RW4QB8 Arachis hypogaea HOM05D006010 ORTHO05D007381 7.8e-76 288.1 319 56.4
Cc02_g11480 Coffea canephora HOM05D006010 ORTHO05D007381 1.3e-75 287.3 321 56.7
Potri.017G135500 Populus trichocarpa HOM05D006010 ORTHO05D007381 1.7e-75 287.0 337 56.4
TWI53G0527 Tripterygium wilfordii HOM05D006010 ORTHO05D007381 5.0e-75 285.4 330 54.8
QL12p000853 Quercus lobata HOM05D006010 ORTHO05D007381 8.6e-75 284.6 381 49.3
arahy.Tifrunner.gnm1.ann1.14A9Q3 Arachis hypogaea HOM05D006010 ORTHO05D007381 1.5e-74 283.9 323 55.4
Medtr5g077800 Medicago truncatula HOM05D006010 ORTHO05D007381 1.5e-74 283.9 330 57.0
Rhsim10G0180400 Rhododendron simsii HOM05D006010 ORTHO05D007381 1.9e-74 283.5 332 53.9
arahy.Tifrunner.gnm1.ann1.ZG5C6W Arachis hypogaea HOM05D006010 ORTHO05D007381 3.3e-74 282.7 317 55.8
PGR004G1862 Punica granatum HOM05D006010 ORTHO05D007381 4.3e-74 282.3 322 55.6
Phvul.004G098200 Phaseolus vulgaris HOM05D006010 ORTHO05D007381 1.2e-73 280.8 328 52.4
Atru.chr11.39 Acer truncatum HOM05D006010 ORTHO05D007381 4.7e-73 278.9 325 54.8
FAN28G0351 Fragaria x ananassa HOM05D006010 ORTHO05D007381 3.1e-72 276.2 341 50.7
EL10Ac3g05516 Beta vulgaris HOM05D006010 ORTHO05D007381 4.0e-72 275.8 307 55.7
Sabra17G0114300 Salix brachista HOM05D006010 ORTHO05D007381 1.2e-71 274.2 346 52.6
Cpa.g.sc116.81 Carica papaya HOM05D006010 ORTHO05D007381 1.5e-71 273.9 374 48.9
Eucgr.F02881 Eucalyptus grandis HOM05D006010 ORTHO05D007381 1.5e-71 273.9 320 55.9
MSTRG.15654 Avicennia marina HOM05D006010 ORTHO05D007381 4.4e-71 272.3 336 51.5
Sabra17G0111300 Salix brachista HOM05D006010 ORTHO05D007381 5.8e-71 271.9 346 52.3
FAN28G1345 Fragaria x ananassa HOM05D006010 ORTHO05D007381 1.1e-69 267.7 307 52.8
Hund11982 Selenicereus undatus HOM05D006010 ORTHO05D007381 2.4e-69 266.5 305 54.8
Lsat_1_v5_gn_3_65880 Lactuca sativa HOM05D006010 ORTHO05D007381 7.1e-69 265.0 313 55.3
SalBow1G7757 Salvia bowleyana HOM05D006010 ORTHO05D007381 2.7e-68 263.1 339 50.4
Migut.K00936 Erythranthe guttata HOM05D006010 ORTHO05D007381 3.5e-68 262.7 309 56.0
Ciclev10026000m.g Citrus clementina HOM05D006010 ORTHO05D007381 1.3e-67 260.8 349 50.1
Peaxi162Scf00464g00430 Petunia axillaris HOM05D006010 ORTHO05D007381 8.6e-67 258.1 334 52.4
Duzib235G0102 Durio zibethinus HOM05D006010 ORTHO05D007381 3.3e-66 256.1 310 55.2
GSVIVG01015997001 Vitis vinifera HOM05D006010 ORTHO05D007381 4.3e-66 255.8 404 44.6
THA.LOC104827184 Tarenaya hassleriana HOM05D006010 ORTHO05D007381 5.6e-66 255.4 343 50.7
CAN.G222.64 Capsicum annuum HOM05D006010 ORTHO05D007381 7.3e-66 255.0 333 52.3
PGSC0003DMG400013242 Solanum tuberosum HOM05D006010 ORTHO05D007381 7.3e-66 255.0 332 51.5
Sopen11g006280 Solanum pennellii HOM05D006010 ORTHO05D007381 1.2e-65 254.2 335 51.9
Actinidia28796 Actinidia chinensis HOM05D006010 ORTHO05D007381 3.6e-65 252.7 280 54.6
HanXRQChr15g0482991 Helianthus annuus HOM05D006010 ORTHO05D007381 3.6e-65 252.7 320 54.4
ECA236G4224 Erigeron canadensis HOM05D006010 ORTHO05D007381 4.7e-65 252.3 311 51.8
TPR.G23647 Trifolium pratense HOM05D006010 ORTHO05D007381 2.4e-64 250.0 296 55.1
VMungo0464G0699 Vigna mungo HOM05D006010 ORTHO05D007381 2.4e-64 250.0 301 52.8
Nn3g17023 Nelumbo nucifera HOM05D006010 ORTHO05D007381 3.4e-63 246.1 354 48.6
Oeu048940.2 Olea europaea HOM05D006010 ORTHO05D007381 5.8e-63 245.4 352 49.7
CANSAT01G2297 Cannabis sativa HOM05D006010 ORTHO05D007381 9.9e-63 244.6 371 45.0
FAN23G2851 Fragaria x ananassa HOM05D006010 ORTHO05D007381 2.2e-62 243.4 337 47.5
AUR62016215 Chenopodium quinoa HOM05D006010 ORTHO05D007381 3.8e-62 242.7 312 53.2
MD07G1042200 Malus domestica HOM05D006010 ORTHO05D007381 3.8e-62 242.7 307 52.1
Glyma.16G168300 Glycine max HOM05D006010 ORTHO05D007381 1.4e-61 240.7 330 50.6
Glyma.02G082600 Glycine max HOM05D006010 ORTHO05D007381 2.1e-60 236.9 330 49.4
Thecc.06G019600 Theobroma cacao HOM05D006010 ORTHO05D007381 4.6e-60 235.7 345 47.5
vmacro20589 Vaccinium macrocarpon HOM05D006010 ORTHO05D007381 6.6e-59 231.9 358 45.5
unitig_0.g1692 Utricularia gibba HOM05D006010 ORTHO05D007381 1.1e-58 231.1 339 48.4
AUR62039273 Chenopodium quinoa HOM05D006010 ORTHO05D007381 5.2e-56 222.2 275 53.1
Solyc11g011490.2 Solanum lycopersicum HOM05D006010 ORTHO05D007381 4.9e-54 215.7 281 49.8
FAN26G2228 Fragaria x ananassa HOM05D006010 ORTHO05D007381 6.4e-54 215.3 262 51.1
Sc22g0001300 Simmondsia chinensis HOM05D006010 ORTHO05D007381 1.1e-53 214.5 283 51.2
COL.COLO4_31121 Corchorus olitorius HOM05D006010 ORTHO05D007381 2.4e-53 213.4 387 41.6
Sp3g01890 Schrenkiella parvula HOM05D006010 ORTHO05D007381 2.4e-53 213.4 346 44.5
CDE09G0547 Ceratophyllum demersum HOM05D006010 ORTHO05D007381 2.1e-52 210.3 367 42.0
DCAR_014157 Daucus carota HOM05D006010 ORTHO05D007381 2.7e-52 209.9 318 49.1
TAR623G0083 Trochodendron aralioides HOM05D006010 ORTHO05D007381 1.5e-50 204.1 365 40.5
BcaC05g30500 Brassica carinata HOM05D000919 ORTHO05D004442 1.8e-48 197.2 312 45.2
C09p75990 Brassica napus HOM05D006010 ORTHO05D007381 6.9e-48 195.3 270 47.4
BolC5t35058H Brassica oleracea HOM05D006010 ORTHO05D007381 6.9e-48 195.3 270 47.4
Gohir.A10G157800 Gossypium hirsutum HOM05D006010 ORTHO05D007381 2.0e-47 193.7 389 39.3
Ah.05g176710 Amaranthus hybridus HOM05D006010 ORTHO05D007381 3.4e-47 193.0 379 40.4
GSVIVG01015998001 Vitis vinifera HOM05D006010 ORTHO05D007381 4.5e-47 192.6 288 46.9
SGA_v2.0_scaffold115G32097 Striga asiatica HOM05D006010 ORTHO05D007381 1.7e-46 190.7 324 44.8
AL3G12280 Arabidopsis lyrata HOM05D006010 ORTHO05D007381 6.4e-46 188.7 273 45.1
A05p44250 Brassica napus HOM05D006010 ORTHO05D007381 6.4e-46 188.7 269 47.2
BraA06t23281Z Brassica rapa HOM05D000919 ORTHO05D004442 6.4e-46 188.7 269 47.2
Aa31LG5G13330 Aethionema arabicum HOM05D006010 ORTHO05D007381 8.4e-46 188.3 353 39.4
Lj2A517G41 Lonicera japonica HOM05D006010 ORTHO05D007381 8.4e-46 188.3 225 51.6
AT3G02860 Arabidopsis thaliana HOM05D006010 ORTHO05D007381 2.4e-45 186.8 274 47.1
Carub.0003s0196 Capsella rubella HOM05D006010 ORTHO05D007381 3.2e-45 186.4 276 44.9
Gorai.011G090700 Gossypium raimondii HOM05D006010 ORTHO05D007381 7.1e-45 185.3 391 38.9
Os05g0495100 Oryza sativa ssp. japonica HOM05D006010 ORTHO05D007381 6.0e-44 182.2 368 40.2
Thhalv10021193m.g Eutrema salsugineum HOM05D006010 ORTHO05D007381 3.9e-43 179.5 267 45.3
Gohir.D10G083400 Gossypium hirsutum HOM05D006010 ORTHO05D007381 3.9e-43 179.5 393 38.4
GSVIVG01016007001 Vitis vinifera HOM05D006010 ORTHO05D007381 3.9e-43 179.5 280 48.2
Zm00001eb291600 Zea mays HOM05D006010 ORTHO05D007381 1.9e-42 177.2 361 41.3
CARHR076870 Cardamine hirsuta HOM05D006010 ORTHO05D007381 3.7e-41 172.9 274 42.7
TWI74G0222 Tripterygium wilfordii HOM05D006010 ORTHO05D007381 1.2e-39 167.9 258 46.1
GSVIVG01016005001 Vitis vinifera HOM05D006010 ORTHO05D007381 2.2e-38 163.7 227 49.3
Manes.07G077600 Manihot esculenta HOM05D006010 ORTHO05D007381 2.9e-38 163.3 250 51.6
Ca_05837_v3 Cicer arietinum L. HOM05D006010 ORTHO05D007381 1.1e-37 161.4 158 63.9
CSS0039891 Camellia sinensis var. sinensis HOM05D006010 ORTHO05D007381 4.6e-36 156.0 140 62.1
Ca_05839_v3 Cicer arietinum L. HOM05D006010 ORTHO05D007381 5.1e-35 152.5 125 66.4
PSO478G0898 Papaver somniferum HOM05D006010 ORTHO05D007381 6.7e-35 152.1 262 42.4
TPR.G23699 Trifolium pratense HOM05D005584 ORTHO05D006809 2.5e-34 150.2 196 49.0
AagrBONN_evm.TU.Sc2ySwM_369.381 Anthoceros agrestis HOM05D006010 ORTHO05D007381 2.8e-33 146.7 311 40.8
FAN25G0538 Fragaria x ananassa HOM05D006010 ORTHO05D007381 8.2e-33 145.2 158 54.4
PSO017G1892 Papaver somniferum HOM05D006010 ORTHO05D007381 1.4e-32 144.4 261 41.0
SHI30126 Sapria himalayana HOM05D006010 ORTHO05D007381 1.8e-32 144.1 173 55.5
ATR0320G006 Amborella trichopoda HOM05D006010 ORTHO05D007381 6.0e-28 129.0 137 61.3
SEGI_17538 Sequoiadendron giganteum HOM05D006010 ORTHO05D007381 6.0e-28 129.0 224 39.7
Sed0023512 Sechium edule HOM05D006010 ORTHO05D007381 8.7e-27 125.2 68 86.8
Sed0018686 Sechium edule HOM05D006010 ORTHO05D007381 1.5e-26 124.4 65 89.2
Mapoly0044s0136 Marchantia polymorpha HOM05D006010 ORTHO05D007381 2.5e-26 123.6 324 37.3
CSS0001849 Camellia sinensis var. sinensis HOM05D006010 ORTHO05D007381 5.9e-23 112.5 112 66.1
CSS0044569 Camellia sinensis var. sinensis HOM05D006010 ORTHO05D007381 5.9e-23 112.5 112 66.1
Aqoxy3G00232 Aquilegia oxysepala HOM05D006010 ORTHO05D007381 1.0e-22 111.7 127 60.6
Lj2A517G40 Lonicera japonica HOM05D006010 ORTHO05D007381 2.1e-20 104.0 105 62.9
ATR0320G008 Amborella trichopoda HOM05D006010 ORTHO05D007381 2.3e-19 100.5 136 47.1
GSVIVG01016036001 Vitis vinifera HOM05D006010 ORTHO05D007381 6.7e-19 99.0 67 71.6
Nitab4.5_0011135g0050 Nicotiana tabacum HOM05D006010 ORTHO05D007381 9.7e-18 95.1 127 50.4
Pp3c12_7630 Physcomitrium patens HOM05D006010 ORTHO05D007381 3.8e-14 83.2 209 36.8
SHI30124 Sapria himalayana HOM05D006010 ORTHO05D007381 8.5e-14 82.0 121 43.0
Glyma.14G212900 Glycine max HOM05D026408 ORTHO05D029776 2.5e-13 80.5 135 38.5
FAN21G0982 Fragaria x ananassa HOM05D006010 ORTHO05D007381 7.2e-13 79.0 158 35.4
VMungo0647G0061 Vigna mungo HOM05D026408 ORTHO05D029776 1.3e-09 68.2 130 33.8
Phvul.008G238000 Phaseolus vulgaris HOM05D026408 ORTHO05D029776 1.7e-09 67.8 135 34.1
TPR.G36575 Trifolium pratense HOM05D006010 ORTHO05D007381 5.3e-08 62.8 54 63.0
CSS0015748 Camellia sinensis var. sinensis HOM05D006010 ORTHO05D007381 1.3e-06 58.2 44 68.2
CSS0044039 Camellia sinensis var. sinensis HOM05D006010 ORTHO05D007381 1.3e-06 58.2 44 68.2


User provided reference genes

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