Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C020629.2 Cucumis melo HOM05D004190 ORTHO05D004692 5.6e-133 477.6 243 100.0
CsaV3_1G034280 Cucumis sativus L. HOM05D004190 ORTHO05D004692 3.6e-116 421.8 280 81.4
ClCG03G001470 Citrullus lanatus HOM05D004190 ORTHO05D004692 6.9e-83 311.2 277 67.1
Sed0018693 Sechium edule HOM05D004190 ORTHO05D004692 2.4e-67 259.6 260 60.8
Sed0024869 Sechium edule HOM05D004190 ORTHO05D004692 3.1e-43 179.5 182 57.1
MD11G1107500 Malus domestica HOM05D004190 ORTHO05D004692 1.2e-26 124.4 258 36.8
MD03G1092700 Malus domestica HOM05D004190 ORTHO05D004692 3.8e-25 119.4 261 36.0
PGR119G1862 Punica granatum HOM05D004190 ORTHO05D004692 3.3e-24 116.3 265 34.7
Cpa.g.sc81.141 Carica papaya HOM05D004190 ORTHO05D004692 5.5e-24 115.5 252 36.5
Gohir.A13G227300 Gossypium hirsutum HOM05D004190 ORTHO05D004692 1.2e-23 114.4 228 36.4
Prupe.6G076700 Prunus persica HOM05D004190 ORTHO05D004692 1.6e-23 114.0 244 34.8
Gorai.013G263700 Gossypium raimondii HOM05D004190 ORTHO05D004692 3.6e-23 112.8 224 36.6
CiPaw.04G135700 Carya illinoinensis HOM05D004190 ORTHO05D004692 4.7e-23 112.5 157 41.4
Atru.chr3.3912 Acer truncatum HOM05D004190 ORTHO05D004692 6.1e-23 112.1 242 34.7
Gohir.D13G232900 Gossypium hirsutum HOM05D004190 ORTHO05D004692 3.0e-22 109.8 224 36.2
Thecc.09G321100 Theobroma cacao HOM05D004190 ORTHO05D004692 2.0e-21 107.1 227 33.5
CiPaw.13G093900 Carya illinoinensis HOM05D004190 ORTHO05D004692 7.5e-21 105.1 150 40.7
Actinidia07264 Actinidia chinensis HOM05D004190 ORTHO05D004692 2.2e-20 103.6 227 33.9
COL.COLO4_18512 Corchorus olitorius HOM05D004190 ORTHO05D004692 2.8e-20 103.2 232 34.9
Gohir.A05G095600 Gossypium hirsutum HOM05D004190 ORTHO05D004692 2.8e-20 103.2 228 32.5
Ciclev10029152m.g Citrus clementina HOM05D004190 ORTHO05D004692 3.7e-20 102.8 252 33.7
RcHm_v2.0_Chr5g0064931 Rosa chinensis HOM05D004190 ORTHO05D004692 4.9e-20 102.4 263 33.5
Gorai.009G099200 Gossypium raimondii HOM05D004190 ORTHO05D004692 8.3e-20 101.7 238 31.5
Duzib170G0106 Durio zibethinus HOM05D004190 ORTHO05D004692 1.1e-19 101.3 229 34.1
Duzib150G1353 Durio zibethinus HOM05D004190 ORTHO05D004692 4.1e-19 99.4 237 32.1
Gohir.D05G095900 Gossypium hirsutum HOM05D004190 ORTHO05D004692 5.4e-19 99.0 238 31.1
Hund04953 Selenicereus undatus HOM05D004190 ORTHO05D004692 9.2e-19 98.2 229 33.2
THA.LOC104814877 Tarenaya hassleriana HOM05D004190 ORTHO05D004692 1.2e-18 97.8 225 34.7
FvH4_3g36180 Fragaria vesca HOM05D004190 ORTHO05D004692 1.6e-18 97.4 150 41.3
THA.LOC104810778 Tarenaya hassleriana HOM05D004190 ORTHO05D004692 2.0e-18 97.1 238 33.6
GSVIVG01024954001 Vitis vinifera HOM05D004190 ORTHO05D004692 2.0e-18 97.1 122 44.3
CANSAT54G1895 Cannabis sativa HOM05D004190 ORTHO05D004692 3.5e-18 96.3 254 33.5
FAN16G2398 Fragaria x ananassa HOM05D004190 ORTHO05D004692 3.5e-18 96.3 142 40.8
FAN21G2646 Fragaria x ananassa HOM05D004190 ORTHO05D004692 7.8e-18 95.1 144 42.4
FAN25G3130 Fragaria x ananassa HOM05D004190 ORTHO05D004692 1.7e-17 94.0 143 42.0
Eucgr.J02050 Eucalyptus grandis HOM05D004190 ORTHO05D004692 3.9e-17 92.8 287 29.6
Thhalv10014530m.g Eutrema salsugineum HOM05D004190 ORTHO05D004692 3.9e-17 92.8 221 33.5
BcaB05g22507 Brassica carinata HOM05D004190 ORTHO05D004692 1.1e-16 91.3 223 33.6
BcaC03g14013 Brassica carinata HOM05D004190 ORTHO05D004692 1.1e-16 91.3 226 34.1
BolC2t07349H Brassica oleracea HOM05D004190 ORTHO05D004692 1.1e-16 91.3 226 34.1
Manes.01G173632 Manihot esculenta HOM05D004190 ORTHO05D004692 1.1e-16 91.3 255 33.7
TWI31G0561 Tripterygium wilfordii HOM05D004190 ORTHO05D004692 1.1e-16 91.3 217 35.0
Sc21g0005810 Simmondsia chinensis HOM05D004190 ORTHO05D004692 2.5e-16 90.1 225 32.9
BraA02t05794Z Brassica rapa HOM05D004190 ORTHO05D004692 4.3e-16 89.4 244 32.0
FAN11G2049 Fragaria x ananassa HOM05D004190 ORTHO05D004692 4.3e-16 89.4 194 36.1
Sp6g21060 Schrenkiella parvula HOM05D004190 ORTHO05D004692 9.5e-16 88.2 224 33.0
Haze_24100 Corylus avellana HOM05D004190 ORTHO05D004692 1.2e-15 87.8 294 27.6
Aa31sc23G430 Aethionema arabicum HOM05D004190 ORTHO05D004692 1.6e-15 87.4 236 31.4
Hund18906 Selenicereus undatus HOM05D004190 ORTHO05D004692 2.1e-15 87.0 226 32.3
TWI79G1380 Tripterygium wilfordii HOM05D004190 ORTHO05D004692 2.8e-15 86.7 171 36.8
BcaC01g06528 Brassica carinata HOM05D004190 ORTHO05D004692 3.6e-15 86.3 153 36.6
Oeu048854.1 Olea europaea HOM05D004190 ORTHO05D004692 4.7e-15 85.9 140 36.4
CDE02G2475 Ceratophyllum demersum HOM05D004190 ORTHO05D004692 1.0e-14 84.7 135 37.0
C02p12490 Brassica napus HOM05D000173 ORTHO05D000316 1.4e-14 84.3 159 34.0
Sabra09G0021900 Salix brachista HOM05D004190 ORTHO05D004692 1.8e-14 84.0 181 33.7
Potri.009G031100 Populus trichocarpa HOM05D004190 ORTHO05D004692 2.3e-14 83.6 214 36.0
Nn2g13344 Nelumbo nucifera HOM05D004190 ORTHO05D004692 3.1e-14 83.2 217 30.0
Rhsim13G0195100 Rhododendron simsii HOM05D004190 ORTHO05D004692 5.2e-14 82.4 330 28.2
BraA10t43742Z Brassica rapa HOM05D000173 ORTHO05D000316 8.9e-14 81.6 163 33.7
CARHR285750 Cardamine hirsuta HOM05D004190 ORTHO05D004692 8.9e-14 81.6 159 35.8
Thhalv10002683m.g Eutrema salsugineum HOM05D004190 ORTHO05D004692 8.9e-14 81.6 168 34.5
BraA03t10485Z Brassica rapa HOM05D004190 ORTHO05D004692 1.2e-13 81.3 164 36.0
BcaC04g19780 Brassica carinata HOM05D004190 ORTHO05D004692 1.5e-13 80.9 159 35.2
C09p51780 Brassica napus HOM05D000173 ORTHO05D004692 3.4e-13 79.7 171 34.5
BolC9t58040H Brassica oleracea HOM05D000173 ORTHO05D004692 3.4e-13 79.7 171 34.5
Dinv08914 Davidia involucrata HOM05D004190 ORTHO05D004692 3.4e-13 79.7 126 41.3
TAR623G1294 Trochodendron aralioides HOM05D004190 ORTHO05D004692 5.8e-13 79.0 230 29.6
C03p13790 Brassica napus HOM05D004190 ORTHO05D004692 1.3e-12 77.8 159 33.3
BolC1t03263H Brassica oleracea HOM05D004190 ORTHO05D004692 1.7e-12 77.4 167 32.9
AL8G35820 Arabidopsis lyrata HOM05D004190 ORTHO05D004692 2.2e-12 77.0 245 29.8
AT3G46580 Arabidopsis thaliana HOM05D004190 ORTHO05D004692 2.2e-12 77.0 161 32.9
BcaC09g49754 Brassica carinata HOM05D004190 ORTHO05D004692 2.2e-12 77.0 167 32.9
C01p33300 Brassica napus HOM05D004190 ORTHO05D004692 2.2e-12 77.0 167 32.9
BraA01t02543Z Brassica rapa HOM05D004190 ORTHO05D004692 2.2e-12 77.0 167 32.9
Hma1.2p1_0220F.1_g093040 Hydrangea macrophylla HOM05D004190 ORTHO05D004692 2.2e-12 77.0 60 61.7
Hma1.2p1_1227F.1_g268580 Hydrangea macrophylla HOM05D004190 ORTHO05D004692 2.2e-12 77.0 60 61.7
BolC3t13827H Brassica oleracea HOM05D004190 ORTHO05D004692 2.9e-12 76.6 158 33.5
AL5G25450 Arabidopsis lyrata HOM05D004190 ORTHO05D004692 4.9e-12 75.9 160 33.8
BcaB01g04586 Brassica carinata HOM05D004190 ORTHO05D004692 6.4e-12 75.5 165 30.9
BcaB01g04590 Brassica carinata HOM05D004190 ORTHO05D004692 6.4e-12 75.5 155 31.0
Aa31LG4G15580 Aethionema arabicum HOM05D004190 ORTHO05D004692 8.3e-12 75.1 163 31.9
AT5G59380 Arabidopsis thaliana HOM05D004190 ORTHO05D004692 1.4e-11 74.3 232 27.2
EL10Ac7g16022 Beta vulgaris HOM05D004190 ORTHO05D004692 1.9e-11 73.9 227 29.5
BcaB08g36263 Brassica carinata HOM05D004190 ORTHO05D004692 2.4e-11 73.6 161 31.7
Sc24g0002450 Simmondsia chinensis HOM05D004190 ORTHO05D004692 3.2e-11 73.2 194 31.4
Carub.0008s2005 Capsella rubella HOM05D004190 ORTHO05D004692 4.1e-11 72.8 224 29.5
Dinv22804 Davidia involucrata HOM05D004190 ORTHO05D004692 4.1e-11 72.8 233 31.8
BcaB05g23553 Brassica carinata HOM05D004190 ORTHO05D004692 7.0e-11 72.0 165 30.3
Carub.0005s1285 Capsella rubella HOM05D004190 ORTHO05D004692 7.0e-11 72.0 175 33.7
QL01p031797 Quercus lobata HOM05D004190 ORTHO05D004692 9.2e-11 71.6 323 25.1
Ah.08g219540 Amaranthus hybridus HOM05D004190 ORTHO05D004692 1.2e-10 71.2 226 28.3
CSS0021452 Camellia sinensis var. sinensis HOM05D004190 ORTHO05D004692 1.2e-10 71.2 68 50.0
AUR62001782 Chenopodium quinoa HOM05D004190 ORTHO05D004692 2.0e-10 70.5 228 29.4
Ah.15g097420 Amaranthus hybridus HOM05D004190 ORTHO05D004692 3.5e-10 69.7 223 26.9
Peaxi162Scf00224g00513 Petunia axillaris HOM05D004190 ORTHO05D004692 3.5e-10 69.7 219 29.7
Solyc11g068740.2 Solanum lycopersicum HOM05D004190 ORTHO05D004692 3.5e-10 69.7 235 29.8
Aqoxy4G02933 Aquilegia oxysepala HOM05D004190 ORTHO05D004692 6.0e-10 68.9 136 36.0
AUR62009570 Chenopodium quinoa HOM05D004190 ORTHO05D004692 6.0e-10 68.9 229 29.3
PGSC0003DMG400026344 Solanum tuberosum HOM05D004190 ORTHO05D004692 1.0e-09 68.2 228 32.0
Cc01_g08740 Coffea canephora HOM05D004190 ORTHO05D004692 1.3e-09 67.8 238 27.7
Sopen11g027450 Solanum pennellii HOM05D004190 ORTHO05D004692 1.3e-09 67.8 235 29.4
Dinv35597 Davidia involucrata HOM05D022761 ORTHO05D022494 5.0e-09 65.9 112 35.7
SHI05942 Sapria himalayana HOM05D004190 ORTHO05D004692 5.0e-09 65.9 233 26.2
PGSC0003DMG400024773 Solanum tuberosum HOM05D004190 ORTHO05D004692 8.6e-09 65.1 137 29.2
Nitab4.5_0001135g0020 Nicotiana tabacum HOM05D004190 ORTHO05D004692 1.5e-08 64.3 221 26.7
Haze_12048 Corylus avellana HOM05D004190 ORTHO05D004692 1.9e-08 63.9 348 25.3
PGSC0003DMG400026343 Solanum tuberosum HOM05D004190 ORTHO05D004692 1.9e-08 63.9 76 39.5
Aa31LG8G9210 Aethionema arabicum HOM05D004190 ORTHO05D004692 2.5e-08 63.5 144 32.6
Lsat_1_v5_gn_3_111560 Lactuca sativa HOM05D004190 ORTHO05D004692 2.5e-08 63.5 201 31.8
ECA240G3776 Erigeron canadensis HOM05D004190 ORTHO05D000203 4.3e-08 62.8 210 31.9
Nitab4.5_0003516g0050 Nicotiana tabacum HOM05D004190 ORTHO05D004692 9.5e-08 61.6 219 26.5
MBI05_g22031_MAGBIO Magnolia biondii HOM05D004190 ORTHO05D004692 1.2e-07 61.2 105 30.5
Sp5g15120 Schrenkiella parvula HOM05D004190 ORTHO05D004692 1.6e-07 60.8 49 53.1
HanXRQChr03g0089211 Helianthus annuus HOM05D004190 ORTHO05D004692 2.8e-07 60.1 215 31.6
Cfa011508 Carpinus fangiana HOM05D004190 ORTHO05D004692 8.0e-07 58.5 128 35.2
CARHR155230 Cardamine hirsuta HOM05D004190 ORTHO05D004692 1.4e-06 57.8 67 38.8
Actinidia24234 Actinidia chinensis HOM05D004190 ORTHO05D004692 1.8e-06 57.4 131 35.9
Aqoxy7G03749 Aquilegia oxysepala HOM05D004190 ORTHO05D004692 1.8e-06 57.4 48 47.9
C03p13770 Brassica napus HOM05D000021 ORTHO05D000010 1.8e-06 57.4 45 44.4
BolC3t13826H Brassica oleracea HOM05D000021 ORTHO05D000010 1.8e-06 57.4 45 44.4
Oeu002348.1 Olea europaea HOM05D004190 ORTHO05D004692 1.8e-06 57.4 102 34.3
ATR0559G266 Amborella trichopoda HOM05D004190 ORTHO05D004692 3.1e-06 56.6 205 28.3
Duzib093G1405 Durio zibethinus HOM05D006496 ORTHO05D004692 4.0e-06 56.2 75 37.3
GSVIVG01025031001 Vitis vinifera HOM05D006496 ORTHO05D008390 8.9e-06 55.1 69 40.6


User provided reference genes

Program Settings