Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C017635.2 Cucumis melo HOM05D005328 ORTHO05D006049 7.8e-175 617.5 420 100.0
CsaV3_4G004310 Cucumis sativus L. HOM05D005328 ORTHO05D006049 1.7e-161 573.2 420 95.2
ClCG07G017100 Citrullus lanatus HOM05D005328 ORTHO05D006049 1.5e-154 550.1 420 90.5
Sed0006700 Sechium edule HOM05D005328 ORTHO05D006049 4.8e-124 448.7 513 61.0
Rhsim13G0137800 Rhododendron simsii HOM05D005328 ORTHO05D006049 2.2e-84 317.0 424 51.2
Dinv04372 Davidia involucrata HOM05D005328 ORTHO05D006049 2.9e-81 306.6 446 48.0
Manes.03G095600 Manihot esculenta HOM05D005328 ORTHO05D006049 6.1e-79 298.9 449 46.3
QL05p066147 Quercus lobata HOM05D005328 ORTHO05D006049 1.4e-78 297.7 431 60.1
Duzib151G0457 Durio zibethinus HOM05D005328 ORTHO05D006049 1.2e-77 294.7 429 52.0
Thecc.04G160200 Theobroma cacao HOM05D005328 ORTHO05D006049 3.4e-77 293.1 430 50.2
TAR626G1462 Trochodendron aralioides HOM05D005328 ORTHO05D006049 3.4e-77 293.1 450 53.8
Eucgr.E04239 Eucalyptus grandis HOM05D005328 ORTHO05D006049 2.8e-76 290.0 449 47.4
Lj6g0010372 Lotus japonicus HOM05D005328 ORTHO05D006049 1.8e-75 287.3 443 49.0
unitig_748.g7855 Utricularia gibba HOM05D005328 ORTHO05D006049 3.1e-75 286.6 432 48.6
CSS0022453 Camellia sinensis var. sinensis HOM05D005328 ORTHO05D006049 5.4e-75 285.8 431 50.1
Gohir.A02G007200 Gossypium hirsutum HOM05D005328 ORTHO05D006049 1.2e-74 284.6 443 49.2
Ca_00786_v3 Cicer arietinum L. HOM05D005328 ORTHO05D006049 1.6e-74 284.3 425 54.8
Ca_11373_v3 Cicer arietinum L. HOM05D005328 ORTHO05D006049 1.6e-74 284.3 425 54.8
Ciclev10015350m.g Citrus clementina HOM05D005328 ORTHO05D006049 1.6e-74 284.3 432 50.9
Sc13g0008540 Simmondsia chinensis HOM05D005328 ORTHO05D006049 2.7e-74 283.5 435 48.7
PGR042G0801 Punica granatum HOM05D005328 ORTHO05D006049 3.5e-74 283.1 435 53.6
CiPaw.10G085200 Carya illinoinensis HOM05D005328 ORTHO05D006049 5.9e-74 282.3 423 54.6
SGA_v2.0_scaffold7G03648 Striga asiatica HOM05D005328 ORTHO05D006049 5.9e-74 282.3 422 51.4
TPR.G10498 Trifolium pratense HOM05D005328 ORTHO05D006049 5.9e-74 282.3 450 54.0
HPP92_007484 Vanilla planifolia HOM05D005328 ORTHO05D006049 7.7e-74 282.0 420 51.2
Actinidia02271 Actinidia chinensis HOM05D005328 ORTHO05D006049 1.0e-73 281.6 425 47.8
COL.COLO4_12851 Corchorus olitorius HOM05D005328 ORTHO05D006049 2.3e-73 280.4 441 50.3
Gohir.D02G007001 Gossypium hirsutum HOM05D005328 ORTHO05D006049 2.3e-73 280.4 431 51.5
Atru.chr1.2204 Acer truncatum HOM05D005328 ORTHO05D006049 2.9e-73 280.0 500 43.2
Hma1.2p1_0391F.1_g142830 Hydrangea macrophylla HOM05D005328 ORTHO05D006049 5.0e-73 279.3 421 48.7
Gorai.005G008200 Gossypium raimondii HOM05D005328 ORTHO05D006049 4.2e-72 276.2 443 51.5
Phvul.006G134100 Phaseolus vulgaris HOM05D005328 ORTHO05D006049 7.2e-72 275.4 478 45.0
Nitab4.5_0005721g0030 Nicotiana tabacum HOM05D005328 ORTHO05D006049 1.6e-71 274.2 425 49.4
VMungo0540G0318 Vigna mungo HOM05D005328 ORTHO05D006049 2.8e-71 273.5 476 45.0
Hund04726 Selenicereus undatus HOM05D005328 ORTHO05D006049 4.0e-70 269.6 446 45.1
CDE03G0050 Ceratophyllum demersum HOM05D005328 ORTHO05D006049 6.8e-70 268.9 422 49.5
Cpa.g.sc53.124 Carica papaya HOM05D005328 ORTHO05D006049 8.9e-70 268.5 485 42.3
Oeu016925.1 Olea europaea HOM05D005328 ORTHO05D006049 2.0e-69 267.3 465 51.2
Nitab4.5_0002880g0010 Nicotiana tabacum HOM05D005328 ORTHO05D006049 4.4e-69 266.2 422 52.4
ECA234G3238 Erigeron canadensis HOM05D005328 ORTHO05D006049 5.7e-69 265.8 425 46.8
Lalb_Chr15g0088491 Lupinus albus HOM05D005328 ORTHO05D006049 1.3e-68 264.6 508 44.7
Glyma.15G123900 Glycine max HOM05D005328 ORTHO05D006049 1.7e-68 264.2 484 46.3
Sabra06G0000700 Salix brachista HOM05D005328 ORTHO05D006049 6.3e-68 262.3 469 51.0
CAN.G2049.4 Capsicum annuum HOM05D005328 ORTHO05D006049 8.3e-68 261.9 430 47.4
Lsat_1_v5_gn_4_65161 Lactuca sativa HOM05D005328 ORTHO05D006049 1.4e-67 261.2 430 46.5
Potri.006G000200 Populus trichocarpa HOM05D005328 ORTHO05D006049 1.4e-67 261.2 489 43.6
arahy.Tifrunner.gnm1.ann1.B05UD4 Arachis hypogaea HOM05D005328 ORTHO05D006049 7.0e-67 258.8 460 53.3
Aqoxy6G01137 Aquilegia oxysepala HOM05D005328 ORTHO05D006049 2.0e-66 257.3 541 45.3
HanXRQChr17g0558521 Helianthus annuus HOM05D005328 ORTHO05D006049 2.0e-66 257.3 429 48.3
TWI63G1825 Tripterygium wilfordii HOM05D005328 ORTHO05D006049 5.9e-66 255.8 431 47.8
Psat1g170800 Pisum sativum HOM05D005328 ORTHO05D006049 1.0e-65 255.0 489 49.9
BcaB02g08879 Brassica carinata HOM05D005328 ORTHO05D006049 1.7e-65 254.2 446 44.2
Aa31LG1G25860 Aethionema arabicum HOM05D005328 ORTHO05D006049 2.3e-65 253.8 426 41.8
Prupe.1G161200 Prunus persica HOM05D005328 ORTHO05D006049 2.9e-65 253.4 169 76.9
DCAR_022839 Daucus carota HOM05D005328 ORTHO05D006049 1.9e-64 250.8 165 80.6
Migut.M01485 Erythranthe guttata HOM05D005328 ORTHO05D006049 1.9e-64 250.8 423 47.5
vmacro03583 Vaccinium macrocarpon HOM05D005328 ORTHO05D006049 9.5e-64 248.4 457 42.0
A05p04290 Brassica napus HOM05D005328 ORTHO05D006049 1.6e-63 247.7 446 43.9
A03p24730 Brassica napus HOM05D005328 ORTHO05D006049 2.1e-63 247.3 441 46.9
BraA03t11679Z Brassica rapa HOM05D005328 ORTHO05D006049 2.1e-63 247.3 441 47.2
AUR62021212 Chenopodium quinoa HOM05D005328 ORTHO05D006049 2.1e-63 247.3 440 47.0
BraA05t19414Z Brassica rapa HOM05D005328 ORTHO05D006049 4.7e-63 246.1 458 43.2
BcaC02g12330 Brassica carinata HOM05D005328 ORTHO05D006049 6.1e-63 245.7 443 42.2
Sopen02g029040 Solanum pennellii HOM05D005328 ORTHO05D006049 6.1e-63 245.7 461 42.1
C03p29470 Brassica napus HOM05D005328 ORTHO05D006049 1.4e-62 244.6 444 41.0
THA.LOC104804861 Tarenaya hassleriana HOM05D005328 ORTHO05D006049 2.3e-62 243.8 482 40.2
THA.LOC104807080 Tarenaya hassleriana HOM05D005328 ORTHO05D006049 2.3e-62 243.8 482 40.2
BcaC01g05181 Brassica carinata HOM05D005328 ORTHO05D006049 3.0e-62 243.4 444 40.8
Medtr2g028200 Medicago truncatula HOM05D005328 ORTHO05D006049 4.0e-62 243.0 510 44.3
Glyma.09G018000 Glycine max HOM05D005328 ORTHO05D006049 1.2e-61 241.5 540 45.9
Solyc02g084340.3 Solanum lycopersicum HOM05D005328 ORTHO05D006049 1.5e-61 241.1 473 45.0
C04p05070 Brassica napus HOM05D005328 ORTHO05D006049 2.0e-61 240.7 468 41.5
arahy.Tifrunner.gnm1.ann1.QMQM64 Arachis hypogaea HOM05D005328 ORTHO05D006049 3.7e-60 236.5 539 37.8
PGSC0003DMG400003630 Solanum tuberosum HOM05D005328 ORTHO05D006049 3.7e-60 236.5 173 75.7
Thhalv10001457m.g Eutrema salsugineum HOM05D005328 ORTHO05D006049 3.2e-59 233.4 446 42.4
FvH4_4g13451 Fragaria vesca HOM05D005328 ORTHO05D006049 5.4e-59 232.6 173 75.1
FAN12G3626 Fragaria x ananassa HOM05D005328 ORTHO05D006049 5.4e-59 232.6 173 75.1
FAN22G2230 Fragaria x ananassa HOM05D005328 ORTHO05D006049 5.4e-59 232.6 173 75.1
EL10Ac3g05669 Beta vulgaris HOM05D005328 ORTHO05D006049 7.0e-59 232.3 495 41.4
SalBow8G1780 Salvia bowleyana HOM05D005328 ORTHO05D006049 1.2e-58 231.5 527 45.2
Ah.07g207330 Amaranthus hybridus HOM05D005328 ORTHO05D002024 3.5e-58 229.9 557 39.7
GSVIVG01018754001 Vitis vinifera HOM05D005328 ORTHO05D006049 3.5e-58 229.9 575 41.0
Cc09_g00040 Coffea canephora HOM05D005328 ORTHO05D006049 3.0e-57 226.9 570 35.1
Sp4g26280 Schrenkiella parvula HOM05D005328 ORTHO05D006049 3.0e-57 226.9 485 42.7
Peaxi162Scf00083g00091 Petunia axillaris HOM05D005328 ORTHO05D006049 1.1e-56 224.9 437 48.3
BcaB01g03324 Brassica carinata HOM05D005328 ORTHO05D006049 2.5e-56 223.8 422 46.2
FAN07G1972 Fragaria x ananassa HOM05D005328 ORTHO05D006049 1.2e-55 221.5 177 70.1
FAN17G2578 Fragaria x ananassa HOM05D005328 ORTHO05D006049 1.2e-55 221.5 177 70.1
RcHm_v2.0_Chr4g0414011 Rosa chinensis HOM05D005328 ORTHO05D006049 1.2e-55 221.5 172 71.5
AL4G43160 Arabidopsis lyrata HOM05D005328 ORTHO05D006049 1.6e-55 221.1 486 40.7
THA.LOC104798630 Tarenaya hassleriana HOM05D005328 ORTHO05D006049 1.4e-54 218.0 169 71.0
CARHR139360 Cardamine hirsuta HOM05D005328 ORTHO05D006049 3.1e-54 216.9 511 36.8
PSO017G7149 Papaver somniferum HOM05D005328 ORTHO05D006049 5.2e-54 216.1 509 36.9
MD04G1014200 Malus domestica HOM05D005328 ORTHO05D006049 1.5e-53 214.5 545 38.5
SEGI_06923 Sequoiadendron giganteum HOM05D005328 ORTHO05D006049 9.8e-53 211.8 170 70.0
AT2G44200 Arabidopsis thaliana HOM05D005328 ORTHO05D006049 3.7e-52 209.9 494 44.7
AagrBONN_evm.TU.Sc2ySwM_228.5016 Anthoceros agrestis HOM05D005328 ORTHO05D006049 3.2e-51 206.8 168 67.9
Pp3c3_9980 Physcomitrium patens HOM05D005328 ORTHO05D006049 4.1e-51 206.5 170 65.9
BolC3t15295H Brassica oleracea HOM05D005328 ORTHO05D006049 2.3e-49 200.7 474 35.9
Carub.0004s2678 Capsella rubella HOM05D005328 ORTHO05D006049 5.1e-49 199.5 525 37.0
PSO170G6444 Papaver somniferum HOM05D005328 ORTHO05D006049 1.5e-48 198.0 553 34.4
Os08g0500200 Oryza sativa ssp. japonica HOM05D005328 ORTHO05D006049 3.7e-44 183.3 521 39.2
Nn1g08402 Nelumbo nucifera HOM05D005328 ORTHO05D006049 1.1e-43 181.8 427 44.7
Prupe.1G162300 Prunus persica HOM05D005328 ORTHO05D006049 2.3e-41 174.1 165 59.4
SMO143G0138 Selaginella moellendorffii HOM05D005328 ORTHO05D006049 1.9e-40 171.0 421 39.0
Mapoly0104s0032 Marchantia polymorpha HOM05D005328 ORTHO05D006049 5.8e-37 159.5 167 52.1
CDE06G1717 Ceratophyllum demersum HOM05D005328 ORTHO05D006049 3.2e-35 153.7 95 86.3
Carub.0004s2677 Capsella rubella HOM05D005328 ORTHO05D006049 1.2e-34 151.8 161 56.5
CBR_g2953 Chara braunii HOM05D005328 ORTHO05D006049 4.6e-34 149.8 176 52.8
AUR62016005 Chenopodium quinoa HOM05D005328 ORTHO05D006049 7.8e-34 149.1 96 81.2
AT2G44195 Arabidopsis thaliana HOM05D005328 ORTHO05D006049 2.1e-31 141.0 149 55.7
QL05p065813 Quercus lobata HOM05D005328 ORTHO05D006049 2.1e-31 141.0 82 89.0
ATR0751G077 Amborella trichopoda HOM05D005328 ORTHO05D006049 4.7e-31 139.8 116 69.0
SMO114G0026 Selaginella moellendorffii HOM05D005328 ORTHO05D006049 6.4e-28 129.4 390 35.1
Zm00001eb097520 Zea mays HOM05D005328 ORTHO05D006049 6.0e-26 122.9 106 64.2
Zm00001eb034090 Zea mays HOM05D005328 ORTHO05D006049 3.0e-25 120.6 507 36.7
AUR62016004 Chenopodium quinoa HOM05D005328 ORTHO05D006049 1.6e-23 114.8 349 40.7
ATR0751G111 Amborella trichopoda HOM05D005328 ORTHO05D006049 3.2e-19 100.5 328 42.4
Cre01.g021400 Chlamydomonas reinhardtii HOM05D005328 ORTHO05D006049 9.3e-19 99.0 174 37.4
SMO246G0007 Selaginella moellendorffii HOM05D005328 ORTHO05D006049 3.5e-18 97.1 63 79.4
AL4G43150 Arabidopsis lyrata HOM05D005328 ORTHO05D006049 1.8e-17 94.7 154 46.8
TAR371G0561 Trochodendron aralioides HOM05D005328 ORTHO05D006049 1.9e-16 91.3 62 72.6
VMungo1383G0559 Vigna mungo HOM05D005328 ORTHO05D006049 1.6e-15 88.2 53 83.0
SMO117G0350 Selaginella moellendorffii HOM05D005328 ORTHO05D006049 2.8e-15 87.4 137 44.5
PRCOL_00001794 Prasinoderma coloniale HOM05D005328 ORTHO05D006049 8.1e-15 85.9 179 35.2
Prupe.1G161500 Prunus persica HOM05D005328 ORTHO05D006049 3.8e-12 77.0 108 46.3
Haze_07067 Corylus avellana HOM05D005328 ORTHO05D006049 2.7e-10 70.9 183 41.5
CDE06G0152 Ceratophyllum demersum HOM05D005328 ORTHO05D006049 6.7e-09 66.2 106 40.6
MELO3C030939.2 Cucumis melo HOM05D019527 ORTHO05D006049 6.7e-09 66.2 46 80.4
MELO3C033373.2 Cucumis melo HOM05D019527 ORTHO05D006049 1.5e-08 65.1 47 76.6
Actinidia26768 Actinidia chinensis HOM05D005328 ORTHO05D006049 2.5e-08 64.3 87 50.6
MELO3C030757.2 Cucumis melo HOM05D019527 ORTHO05D006049 3.3e-08 63.9 46 78.3
MCO07G343 Micromonas commoda HOM05D005328 ORTHO05D006049 3.3e-08 63.9 144 32.6
MELO3C028701.2 Cucumis melo HOM05D019527 ORTHO05D006049 9.6e-08 62.4 46 78.3
DCAR_022842 Daucus carota HOM05D005328 ORTHO05D006049 2.1e-07 61.2 188 31.9
Potri.016G000501 Populus trichocarpa HOM05D005328 ORTHO05D006049 9.0e-06 55.8 62 61.3


User provided reference genes

Program Settings