Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C017564.2 Cucumis melo HOM05D003743 ORTHO05D004311 0.0e+00 1194.1 661 100.0
CsaV3_4G005020 Cucumis sativus L. HOM05D003743 ORTHO05D004311 0.0e+00 1156.0 661 95.6
Sed0012938 Sechium edule HOM05D003743 ORTHO05D004311 1.2e-299 1032.7 661 84.6
Prupe.3G050300 Prunus persica HOM05D003743 ORTHO05D004311 4.0e-258 894.8 662 75.1
Thecc.06G191600 Theobroma cacao HOM05D003743 ORTHO05D004311 6.6e-253 877.5 663 74.4
Haze_06507 Corylus avellana HOM05D003743 ORTHO05D004311 1.5e-252 876.3 664 75.9
Glyma.07G194200 Glycine max HOM05D003743 ORTHO05D004311 1.8e-250 869.4 662 72.2
Cpa.g.sc27.76 Carica papaya HOM05D003743 ORTHO05D004311 2.6e-249 865.5 667 74.1
CiPaw.10G046600 Carya illinoinensis HOM05D003743 ORTHO05D004311 5.7e-249 864.4 664 74.7
MD10G1061800 Malus domestica HOM05D003743 ORTHO05D004311 9.8e-249 863.6 663 73.6
Psat7g112160 Pisum sativum HOM05D003743 ORTHO05D004311 2.2e-248 862.4 664 72.3
Duzib160G0164 Durio zibethinus HOM05D003743 ORTHO05D004311 3.7e-248 861.7 663 73.6
Glyma.13G182500 Glycine max HOM05D003743 ORTHO05D004311 6.3e-248 860.9 662 71.9
TPR.G12063 Trifolium pratense HOM05D003743 ORTHO05D004311 1.6e-246 856.3 663 72.7
Ca_25733_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 5.9e-246 854.4 663 72.5
Gohir.D10G024500 Gossypium hirsutum HOM05D003743 ORTHO05D004311 2.3e-245 852.4 673 72.5
Medtr4g089070 Medicago truncatula HOM05D003743 ORTHO05D004311 8.6e-245 850.5 663 70.7
Gorai.011G025800 Gossypium raimondii HOM05D003743 ORTHO05D004311 2.5e-244 849.0 664 72.9
Gohir.A10G023800 Gossypium hirsutum HOM05D003743 ORTHO05D004311 4.7e-243 844.7 665 72.9
Phvul.002G226300 Phaseolus vulgaris HOM05D003743 ORTHO05D004311 2.3e-242 842.4 662 70.5
VMungo0251G3484 Vigna mungo HOM05D003743 ORTHO05D004311 2.6e-241 839.0 662 69.9
Manes.16G024900 Manihot esculenta HOM05D003743 ORTHO05D004311 3.4e-241 838.6 664 72.3
COL.COLO4_31510 Corchorus olitorius HOM05D003743 ORTHO05D004311 4.4e-241 838.2 663 72.9
QL05p039342 Quercus lobata HOM05D003743 ORTHO05D004311 5.8e-241 837.8 662 74.9
QL10p057179 Quercus lobata HOM05D003743 ORTHO05D004311 5.8e-241 837.8 662 74.9
Duzib235G1026 Durio zibethinus HOM05D003743 ORTHO05D004311 4.9e-240 834.7 663 71.3
RcHm_v2.0_Chr5g0007801 Rosa chinensis HOM05D003743 ORTHO05D004311 7.0e-239 830.9 663 70.7
FAN14G3620 Fragaria x ananassa HOM05D003743 ORTHO05D004311 2.0e-238 829.3 663 70.9
Potri.004G039500 Populus trichocarpa HOM05D003743 ORTHO05D004311 7.8e-238 827.4 666 70.1
Dinv07531 Davidia involucrata HOM05D003743 ORTHO05D004311 1.7e-237 826.2 664 72.0
FAN16G2290 Fragaria x ananassa HOM05D003743 ORTHO05D004311 2.3e-237 825.9 663 70.7
Lj4g0023106 Lotus japonicus HOM05D003743 ORTHO05D004311 3.0e-237 825.5 663 71.6
Potri.011G047900 Populus trichocarpa HOM05D003743 ORTHO05D004311 6.6e-237 824.3 666 71.0
FAN21G0113 Fragaria x ananassa HOM05D003743 ORTHO05D004311 3.3e-236 822.0 663 70.3
FvH4_3g04783 Fragaria vesca HOM05D003743 ORTHO05D004311 6.2e-235 817.8 663 70.1
Lalb_Chr05g0218341 Lupinus albus HOM05D003743 ORTHO05D004311 6.2e-235 817.8 664 70.2
Sabra11G0033300 Salix brachista HOM05D003743 ORTHO05D004311 5.2e-234 814.7 665 68.6
Sabra04G0024300 Salix brachista HOM05D003743 ORTHO05D004311 1.5e-233 813.1 666 71.6
THA.LOC104819165 Tarenaya hassleriana HOM05D003743 ORTHO05D004311 2.0e-233 812.8 665 71.0
Eucgr.E03353 Eucalyptus grandis HOM05D003743 ORTHO05D004311 4.4e-233 811.6 665 69.5
FAN03G0627 Fragaria x ananassa HOM05D003743 ORTHO05D004311 1.7e-232 809.7 663 70.0
arahy.Tifrunner.gnm1.ann1.I4CLDN Arachis hypogaea HOM05D003743 ORTHO05D004311 4.1e-231 805.1 661 67.6
TWI23G0181 Tripterygium wilfordii HOM05D003743 ORTHO05D004311 3.5e-230 802.0 663 68.3
TAR627G0572 Trochodendron aralioides HOM05D003743 ORTHO05D004311 4.6e-230 801.6 667 70.0
PGR042G1300 Punica granatum HOM05D003743 ORTHO05D004311 1.3e-229 800.0 672 68.0
CANSAT35G0257 Cannabis sativa HOM05D003743 ORTHO05D004311 1.4e-226 790.0 676 72.0
CSS0028072 Camellia sinensis var. sinensis HOM05D003743 ORTHO05D004311 2.0e-225 786.2 644 71.0
Hma1.2p1_0126F.1_g059170 Hydrangea macrophylla HOM05D003743 ORTHO05D004311 7.6e-225 784.3 663 68.3
Ciclev10028000m.g Citrus clementina HOM05D003743 ORTHO05D004311 7.8e-222 774.2 662 67.4
Thhalv10023338m.g Eutrema salsugineum HOM05D003743 ORTHO05D004311 1.0e-221 773.9 663 67.6
Aa31LG2G9550 Aethionema arabicum HOM05D003743 ORTHO05D004311 1.5e-220 770.0 664 66.7
Atru.chr7.2377 Acer truncatum HOM05D003743 ORTHO05D004311 5.2e-218 761.5 664 69.7
TAR629G2996 Trochodendron aralioides HOM05D003743 ORTHO05D004311 6.8e-218 761.1 666 68.5
Carub.0002s0416 Capsella rubella HOM05D003743 ORTHO05D004311 8.9e-218 760.8 663 67.3
AT1G61040 Arabidopsis thaliana HOM05D003743 ORTHO05D004311 9.3e-215 750.7 663 66.7
Nitab4.5_0003668g0110 Nicotiana tabacum HOM05D003743 ORTHO05D004311 1.2e-214 750.4 661 67.5
QL03p016879 Quercus lobata HOM05D003743 ORTHO05D004311 2.7e-214 749.2 662 65.4
CARHR052180 Cardamine hirsuta HOM05D003743 ORTHO05D004311 1.3e-213 746.9 662 67.2
AL2G15400 Arabidopsis lyrata HOM05D003743 ORTHO05D004311 1.7e-213 746.5 663 66.4
BcaC06g31829 Brassica carinata HOM05D003743 ORTHO05D004311 3.0e-213 745.7 671 64.7
Glyma.03G168800 Glycine max HOM05D003743 ORTHO05D004311 1.1e-212 743.8 663 66.7
Nitab4.5_0003347g0010 Nicotiana tabacum HOM05D003743 ORTHO05D004311 1.8e-210 736.5 661 66.7
Sp2g03480 Schrenkiella parvula HOM05D003743 ORTHO05D004311 2.4e-210 736.1 664 66.1
Peaxi162Scf00379g00092 Petunia axillaris HOM05D003743 ORTHO05D004311 9.0e-210 734.2 661 66.3
Cc02_g12930 Coffea canephora HOM05D003743 ORTHO05D004311 5.8e-209 731.5 661 65.1
PSO210G5871 Papaver somniferum HOM05D003743 ORTHO05D004311 1.4e-207 726.9 663 66.7
RhsimUnG0044100 Rhododendron simsii HOM05D003743 ORTHO05D004311 6.0e-206 721.5 675 66.1
PSO170G2796 Papaver somniferum HOM05D003743 ORTHO05D004311 2.3e-205 719.5 663 65.9
Prupe.6G309900 Prunus persica HOM05D003743 ORTHO05D004311 3.0e-205 719.2 662 63.1
CAN.G1627.16 Capsicum annuum HOM05D003743 ORTHO05D004311 8.7e-205 717.6 669 67.6
Glyma.19G170200 Glycine max HOM05D003743 ORTHO05D004311 1.1e-204 717.2 666 64.4
Rhsim07G0025200 Rhododendron simsii HOM05D003743 ORTHO05D004311 1.1e-204 717.2 676 65.8
BcaC02g10594 Brassica carinata HOM05D003743 ORTHO05D004311 1.9e-204 716.5 668 65.0
C04p25600 Brassica napus HOM05D003743 ORTHO05D004311 1.9e-204 716.5 668 65.0
C01p37700 Brassica napus HOM05D003743 ORTHO05D004311 3.3e-204 715.7 669 64.1
Lsat_1_v5_gn_2_40361 Lactuca sativa HOM05D003743 ORTHO05D004311 4.3e-204 715.3 666 65.3
Sopen02g023440 Solanum pennellii HOM05D003743 ORTHO05D004311 4.3e-204 715.3 661 65.1
Solyc02g078580.1 Solanum lycopersicum HOM05D003743 ORTHO05D004311 5.6e-204 714.9 661 64.9
PGSC0003DMG400022434 Solanum tuberosum HOM05D003743 ORTHO05D004311 9.6e-204 714.1 663 64.6
DCAR_008049 Daucus carota HOM05D003743 ORTHO05D004311 2.8e-203 712.6 663 64.1
Nn1g07800 Nelumbo nucifera HOM05D003743 ORTHO05D004311 2.8e-203 712.6 670 66.0
Phvul.001G167200 Phaseolus vulgaris HOM05D003743 ORTHO05D004311 4.0e-202 708.8 663 63.7
RcHm_v2.0_Chr3g0457571 Rosa chinensis HOM05D003743 ORTHO05D004311 4.0e-202 708.8 664 62.5
Aqoxy1G03805 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 5.3e-202 708.4 663 62.7
BcaC09g49339 Brassica carinata HOM05D003743 ORTHO05D004311 5.3e-202 708.4 665 63.8
CSS0027200 Camellia sinensis var. sinensis HOM05D003743 ORTHO05D004311 3.4e-201 705.7 667 64.3
DCAR_004097 Daucus carota HOM05D003743 ORTHO05D004311 5.8e-201 704.9 665 64.5
Oeu050830.1 Olea europaea HOM05D003743 ORTHO05D004311 1.3e-200 703.7 662 63.9
FAN25G1603 Fragaria x ananassa HOM05D003743 ORTHO05D004311 8.4e-200 701.0 613 67.2
Lj1g0019037 Lotus japonicus HOM05D003743 ORTHO05D004311 2.1e-198 696.4 670 66.0
FAN05G4405 Fragaria x ananassa HOM05D003743 ORTHO05D004311 1.3e-197 693.7 668 60.8
FvH4_6g07870 Fragaria vesca HOM05D003743 ORTHO05D004311 2.3e-197 693.0 664 61.0
HanXRQChr10g0285841 Helianthus annuus HOM05D003743 ORTHO05D004311 5.1e-197 691.8 615 66.7
A01p29850 Brassica napus HOM05D003743 ORTHO05D004311 2.5e-196 689.5 671 63.3
FAN14G1138 Fragaria x ananassa HOM05D003743 ORTHO05D004311 4.3e-196 688.7 664 60.7
BcaB04g20309 Brassica carinata HOM05D003743 ORTHO05D004311 9.6e-196 687.6 681 62.0
FAN09G3903 Fragaria x ananassa HOM05D003743 ORTHO05D004311 1.4e-194 683.7 665 60.3
Lalb_Chr16g0383591 Lupinus albus HOM05D003743 ORTHO05D004311 1.2e-193 680.6 667 60.6
Ca_08759_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 2.9e-192 676.0 547 69.7
Ca_30219_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 2.9e-192 676.0 547 69.7
Psat3g052160 Pisum sativum HOM05D003743 ORTHO05D004311 1.4e-191 673.7 664 62.3
Migut.M01180 Erythranthe guttata HOM05D003743 ORTHO05D004311 1.9e-191 673.3 665 62.1
Lj8P171T25 Lonicera japonica HOM05D003743 ORTHO05D004311 7.1e-191 671.4 544 70.8
BraA01t03113Z Brassica rapa HOM05D003743 ORTHO05D004311 2.7e-190 669.5 671 62.0
MBI04_g36401_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 1.8e-189 666.8 664 61.0
VMungo1383G3375 Vigna mungo HOM05D003743 ORTHO05D004311 1.8e-189 666.8 659 61.0
SHI01836 Sapria himalayana HOM05D003743 ORTHO05D004311 1.1e-188 664.1 668 60.8
Sc05g0007850 Simmondsia chinensis HOM05D003743 ORTHO05D004311 1.9e-188 663.3 664 62.8
TPR.G30857 Trifolium pratense HOM05D003743 ORTHO05D004311 3.3e-188 662.5 663 62.3
Ah.09g235750 Amaranthus hybridus HOM05D003743 ORTHO05D004311 2.8e-187 659.4 666 60.8
HPP92_024423 Vanilla planifolia HOM05D003743 ORTHO05D004311 1.4e-186 657.1 679 57.3
EL10Ac8g20336 Beta vulgaris HOM05D003743 ORTHO05D004311 3.4e-185 652.5 666 59.0
SGA_v2.0_scaffold100G29640 Striga asiatica HOM05D003743 ORTHO05D004311 1.9e-183 646.7 663 57.2
Ah.04g152550 Amaranthus hybridus HOM05D003743 ORTHO05D004311 4.2e-183 645.6 662 56.0
FAN02G2028 Fragaria x ananassa HOM05D003743 ORTHO05D004311 2.1e-182 643.3 663 57.9
MD04G1191400 Malus domestica HOM05D003743 ORTHO05D004311 3.5e-182 642.5 662 60.3
SalBow8G3648 Salvia bowleyana HOM05D003743 ORTHO05D004311 5.1e-181 638.6 665 57.9
ECA240G0220 Erigeron canadensis HOM05D003743 ORTHO05D004311 1.4e-178 630.6 682 58.1
unitig_748.g8020 Utricularia gibba HOM05D003743 ORTHO05D004311 1.8e-178 630.2 664 57.8
AUR62016972 Chenopodium quinoa HOM05D003743 ORTHO05D004311 5.3e-178 628.6 671 58.9
DCAR_004099 Daucus carota HOM05D003743 ORTHO05D004311 9.0e-178 627.9 669 58.6
CANSAT54G1490 Cannabis sativa HOM05D003743 ORTHO05D004311 3.6e-174 615.9 669 55.9
Medtr7g099060 Medicago truncatula HOM05D003743 ORTHO05D004311 6.1e-174 615.1 668 57.9
MBI16_g34925_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 1.8e-173 613.6 664 59.2
SEGI_13209 Sequoiadendron giganteum HOM05D003743 ORTHO05D004311 1.8e-173 613.6 666 57.8
CDE02G2043 Ceratophyllum demersum HOM05D003743 ORTHO05D004311 6.7e-173 611.7 675 59.9
Lalb_Chr04g0260391 Lupinus albus HOM05D003743 ORTHO05D004311 1.3e-171 607.4 673 55.9
Aqoxy3G03252 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 2.2e-171 606.7 665 57.0
ATR0763G146 Amborella trichopoda HOM05D003743 ORTHO05D004311 6.3e-171 605.1 671 56.5
VMungo1383G2741 Vigna mungo HOM05D003743 ORTHO05D004311 9.1e-170 601.3 673 54.2
Phvul.001G224300 Phaseolus vulgaris HOM05D003743 ORTHO05D004311 2.6e-169 599.7 673 53.8
AUR62020979 Chenopodium quinoa HOM05D003743 ORTHO05D004311 3.2e-167 592.8 656 53.8
AUR62014784 Chenopodium quinoa HOM05D003743 ORTHO05D004311 1.4e-165 587.4 656 56.9
Glyma.03G230500 Glycine max HOM05D003743 ORTHO05D004311 7.4e-164 581.6 679 54.1
Ca_20186_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 6.1e-158 562.0 682 51.5
AUR62043193 Chenopodium quinoa HOM05D003743 ORTHO05D004311 3.0e-157 559.7 660 51.1
TPR.G34103 Trifolium pratense HOM05D003743 ORTHO05D004311 2.4e-154 550.1 686 50.1
Lj1g0026238 Lotus japonicus HOM05D003743 ORTHO05D004311 7.0e-154 548.5 668 50.1
Psat7g225840 Pisum sativum HOM05D003743 ORTHO05D004311 1.3e-152 544.3 684 49.9
Medtr4g032885 Medicago truncatula HOM05D003743 ORTHO05D004311 2.9e-152 543.1 679 51.3
Zm00001eb410600 Zea mays HOM05D003743 ORTHO05D004311 5.5e-151 538.9 669 54.0
MBI16_g34928_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 1.4e-149 534.3 651 56.2
Zm00001eb137720 Zea mays HOM05D003743 ORTHO05D004311 4.0e-149 532.7 668 52.8
Sc06g0009130 Simmondsia chinensis HOM05D003743 ORTHO05D004311 4.4e-148 529.3 663 52.5
arahy.Tifrunner.gnm1.ann1.58ANB0 Arachis hypogaea HOM05D003743 ORTHO05D004311 2.0e-145 520.4 662 50.8
Os12g0535900 Oryza sativa ssp. japonica HOM05D003743 ORTHO05D004311 3.8e-144 516.2 621 53.3
Glyma.13G060000 Glycine max HOM05D003743 ORTHO05D004311 1.4e-141 507.7 401 68.6
EL10Ac8g18529 Beta vulgaris HOM05D003743 ORTHO05D004311 4.4e-140 502.7 547 56.9
FvH4_6g03621 Fragaria vesca HOM05D003743 ORTHO05D004311 2.0e-137 493.8 404 69.1
Actinidia05611 Actinidia chinensis HOM05D003743 ORTHO05D004311 2.6e-132 476.9 405 68.9
BolC1t03734H Brassica oleracea HOM05D003743 ORTHO05D004311 1.7e-131 474.2 430 66.5
Mapoly0001s0024 Marchantia polymorpha HOM05D003743 ORTHO05D004311 8.0e-126 455.3 678 46.0
AagrBONN_evm.TU.Sc2ySwM_368.1522 Anthoceros agrestis HOM05D003743 ORTHO05D004311 5.8e-124 449.1 670 44.9
Pp3c12_17420 Physcomitrium patens HOM05D003743 ORTHO05D004311 4.3e-119 433.0 682 45.0
A03p68920 Brassica napus HOM05D003743 ORTHO05D004311 2.8e-110 403.7 671 44.1
Mapoly0009s0176 Marchantia polymorpha HOM05D003743 ORTHO05D004311 9.9e-92 342.0 684 39.5
Lj1P877T22 Lonicera japonica HOM05D003743 ORTHO05D004311 2.7e-89 334.0 312 61.2
SMO118G0429 Selaginella moellendorffii HOM05D003743 ORTHO05D004311 6.7e-88 329.3 559 41.7
BraSC39t46172Z Brassica rapa HOM05D003743 ORTHO05D004311 2.9e-83 313.9 546 42.3
GSVIVG01006453001 Vitis vinifera HOM05D003743 ORTHO05D004311 7.6e-76 289.3 235 71.5
Oeu016117.1 Olea europaea HOM05D003743 ORTHO05D004311 4.2e-74 283.5 656 38.1
ECA248G2279 Erigeron canadensis HOM05D003743 ORTHO05D004311 6.7e-72 276.2 524 38.9
CBR_g30024 Chara braunii HOM05D003743 ORTHO05D004311 1.3e-59 235.3 631 32.3
Zm00001eb087640 Zea mays HOM05D003743 ORTHO05D004311 6.1e-49 199.9 271 43.5
MBI04_g35990_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 7.2e-42 176.4 224 58.9
Lalb_Chr20g0113451 Lupinus albus HOM05D003743 ORTHO05D004311 2.5e-34 151.4 106 68.9
FvH4_6g03622 Fragaria vesca HOM05D003743 ORTHO05D004311 1.7e-27 128.6 77 84.4
MD05G1317500 Malus domestica HOM05D003743 ORTHO05D004311 9.5e-26 122.9 126 59.5
Aqoxy3G03215 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 8.0e-25 119.8 106 56.6
ECA246G3327 Erigeron canadensis HOM05D001482 ORTHO05D001499 1.8e-21 108.6 81 71.6
EL10Ac4g08952 Beta vulgaris HOM05D003743 ORTHO05D004311 7.0e-21 106.7 159 48.4
SGA_v2.0_scaffold49G18283 Striga asiatica HOM05D003743 ORTHO05D004311 1.9e-18 98.6 194 36.1
Aqoxy3G03213 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 4.0e-16 90.9 74 64.9
Rhsim02G0125200 Rhododendron simsii HOM05D003743 ORTHO05D004311 1.5e-15 89.0 61 67.2
Aqoxy3G03214 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 4.4e-15 87.4 78 65.4
EL10Ac5g12107 Beta vulgaris HOM05D003743 ORTHO05D004311 3.0e-11 74.7 60 61.7
Cre03.g196450 Chlamydomonas reinhardtii HOM05D003743 ORTHO05D004311 3.9e-11 74.3 603 22.7
arahy.Tifrunner.gnm1.ann1.8T1JJH Arachis hypogaea HOM05D003743 ORTHO05D004311 6.6e-11 73.6 142 42.3
PRCOL_00005809 Prasinoderma coloniale HOM05D003743 ORTHO05D004311 5.6e-10 70.5 406 24.4
Nitab4.5_0000556g0130 Nicotiana tabacum HOM05D002396 ORTHO05D002779 8.0e-09 66.6 85 50.6
Lj8E171T0 Lonicera japonica HOM05D003743 ORTHO05D004311 1.5e-07 62.4 83 61.4
Cfa025708 Carpinus fangiana HOM05D003743 ORTHO05D004311 8.3e-06 56.6 474 22.2
SEGI_28495 Sequoiadendron giganteum HOM05D003743 ORTHO05D004311 8.3e-06 56.6 79 48.1


User provided reference genes

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