Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C017073.2 Cucumis melo HOM05D005978 ORTHO05D007472 0.0e+00 2346.2 1184 100.0
CsaV3_4G037800 Cucumis sativus L. HOM05D005978 ORTHO05D007472 0.0e+00 2218.7 1185 94.9
ClCG11G019200 Citrullus lanatus HOM05D005978 ORTHO05D007472 0.0e+00 2108.6 1226 86.5
Sed0020914 Sechium edule HOM05D005978 ORTHO05D007472 0.0e+00 1879.0 1185 80.5
CiPaw.08G079000 Carya illinoinensis HOM05D005978 ORTHO05D007472 0.0e+00 1446.0 1188 62.0
MD06G1000600 Malus domestica HOM05D005978 ORTHO05D007472 0.0e+00 1407.9 1170 61.7
QL02p016300 Quercus lobata HOM05D005978 ORTHO05D007472 0.0e+00 1390.9 1401 53.5
Atru.chr13.20 Acer truncatum HOM05D005978 ORTHO05D007472 0.0e+00 1381.3 1166 60.3
Prupe.5G001100 Prunus persica HOM05D005978 ORTHO05D007472 0.0e+00 1377.1 1180 61.2
Dinv30321 Davidia involucrata HOM05D005978 ORTHO05D007472 0.0e+00 1367.1 1177 59.4
TAR376G0648 Trochodendron aralioides HOM05D005978 ORTHO05D007472 0.0e+00 1365.1 1168 59.8
Haze_22888 Corylus avellana HOM05D005978 ORTHO05D007472 0.0e+00 1359.0 1130 62.1
Ciclev10003766m.g Citrus clementina HOM05D005978 ORTHO05D007472 0.0e+00 1352.0 1166 59.0
Manes.18G000350 Manihot esculenta HOM05D005978 ORTHO05D007472 0.0e+00 1352.0 1183 57.1
Thecc.08G097500 Theobroma cacao HOM05D005978 ORTHO05D007472 0.0e+00 1349.7 1167 59.7
TWI36G1144 Tripterygium wilfordii HOM05D005978 ORTHO05D007472 0.0e+00 1346.6 1181 58.5
GSVIVG01013460001 Vitis vinifera HOM05D005978 ORTHO05D007472 0.0e+00 1342.8 1180 58.7
FvH4_5g26690 Fragaria vesca HOM05D005978 ORTHO05D007472 0.0e+00 1340.1 1168 59.4
RcHm_v2.0_Chr7g0217581 Rosa chinensis HOM05D005978 ORTHO05D007472 0.0e+00 1340.1 1181 59.1
FAN18G0791 Fragaria x ananassa HOM05D005978 ORTHO05D007472 0.0e+00 1337.4 1168 59.3
CANSAT64G0954 Cannabis sativa HOM05D005978 ORTHO05D007472 0.0e+00 1336.6 1184 58.3
Potri.002G001700 Populus trichocarpa HOM05D005978 ORTHO05D007472 0.0e+00 1333.2 1182 56.9
Actinidia15540 Actinidia chinensis HOM05D005978 ORTHO05D007472 0.0e+00 1331.2 1182 58.1
FAN13G0154 Fragaria x ananassa HOM05D005978 ORTHO05D007472 0.0e+00 1328.2 1169 58.8
Nn6g31553 Nelumbo nucifera HOM05D005978 ORTHO05D007472 0.0e+00 1313.9 1173 57.5
Glyma.01G245200 Glycine max HOM05D005978 ORTHO05D007472 0.0e+00 1303.1 1169 56.8
Sabra02G0001200 Salix brachista HOM05D005978 ORTHO05D007472 0.0e+00 1302.3 1223 54.8
FAN04G0649 Fragaria x ananassa HOM05D005978 ORTHO05D007472 0.0e+00 1301.6 1169 57.8
Gorai.009G185700 Gossypium raimondii HOM05D005978 ORTHO05D007472 0.0e+00 1284.2 1192 57.0
Lj1g0010496 Lotus japonicus HOM05D005978 ORTHO05D007472 0.0e+00 1277.3 1186 55.6
PGR031G1913 Punica granatum HOM05D005978 ORTHO05D007472 0.0e+00 1276.5 1185 56.3
Phvul.002G054600 Phaseolus vulgaris HOM05D005978 ORTHO05D007472 0.0e+00 1271.5 1168 55.7
Eucgr.F03624 Eucalyptus grandis HOM05D005978 ORTHO05D007472 0.0e+00 1266.9 1176 56.6
BraA07t31758Z Brassica rapa HOM05D005978 ORTHO05D007472 0.0e+00 1266.5 1166 56.6
AL2G36770 Arabidopsis lyrata HOM05D005978 ORTHO05D007472 0.0e+00 1265.8 1165 56.5
Cpa.g.sc36.98 Carica papaya HOM05D005978 ORTHO05D007472 0.0e+00 1265.0 1199 56.7
A07p42300 Brassica napus HOM05D005978 ORTHO05D007472 0.0e+00 1260.7 1166 56.4
Medtr5g004660 Medicago truncatula HOM05D005978 ORTHO05D007472 0.0e+00 1260.4 1180 54.9
C06p50880 Brassica napus HOM05D005978 ORTHO05D007472 0.0e+00 1259.2 1161 56.4
COL.COLO4_12265 Corchorus olitorius HOM05D005978 ORTHO05D007472 0.0e+00 1255.7 1173 56.4
AT1G76630 Arabidopsis thaliana HOM05D005978 ORTHO05D007472 0.0e+00 1254.2 1165 56.0
Lalb_Chr16g0376221 Lupinus albus HOM05D005978 ORTHO05D007472 0.0e+00 1253.8 1185 54.3
TPR.G21607 Trifolium pratense HOM05D005978 ORTHO05D007472 0.0e+00 1253.0 1157 55.6
BcaC08g47227 Brassica carinata HOM05D005978 ORTHO05D007472 0.0e+00 1245.3 1159 56.2
BolC6t40113H Brassica oleracea HOM05D005978 ORTHO05D007472 0.0e+00 1239.6 1161 56.0
Duzib041G0071 Durio zibethinus HOM05D005978 ORTHO05D007472 0.0e+00 1237.2 1176 56.4
CARHR070190 Cardamine hirsuta HOM05D005978 ORTHO05D007472 0.0e+00 1229.2 1166 54.7
Cc10_g00090 Coffea canephora HOM05D005978 ORTHO05D007472 0.0e+00 1227.6 1167 55.2
Migut.M00377 Erythranthe guttata HOM05D005978 ORTHO05D007472 0.0e+00 1224.9 1171 54.1
BcaC08g47175 Brassica carinata HOM05D005978 ORTHO05D007472 0.0e+00 1223.4 1166 55.0
Sp5g31790 Schrenkiella parvula HOM05D005978 ORTHO05D007472 0.0e+00 1222.2 1165 54.5
arahy.Tifrunner.gnm1.ann1.BP04P6 Arachis hypogaea HOM05D005978 ORTHO05D007472 0.0e+00 1218.0 1181 53.0
Thhalv10018029m.g Eutrema salsugineum HOM05D005978 ORTHO05D007472 0.0e+00 1213.0 1165 54.9
PSO675G6081 Papaver somniferum HOM05D005978 ORTHO05D007472 0.0e+00 1198.3 1177 53.6
Carub.0002s2353 Capsella rubella HOM05D005978 ORTHO05D007472 0.0e+00 1194.1 1165 54.1
PSO541G4404 Papaver somniferum HOM05D005978 ORTHO05D007472 0.0e+00 1194.1 1177 53.3
MBI04_g23900_MAGBIO Magnolia biondii HOM05D005978 ORTHO05D007472 0.0e+00 1190.6 1201 53.0
ECA232G2674 Erigeron canadensis HOM05D005978 ORTHO05D007472 0.0e+00 1189.1 1177 52.4
Rhsim06G0000600 Rhododendron simsii HOM05D005978 ORTHO05D007472 0.0e+00 1189.1 1389 48.5
SalBow7G3859 Salvia bowleyana HOM05D005978 ORTHO05D007472 0.0e+00 1188.7 1173 53.3
AUR62042533 Chenopodium quinoa HOM05D005978 ORTHO05D007472 0.0e+00 1187.6 1171 52.3
HanXRQChr16g0512201 Helianthus annuus HOM05D005978 ORTHO05D007472 0.0e+00 1187.2 1169 52.6
arahy.Tifrunner.gnm1.ann1.U7IYJM Arachis hypogaea HOM05D005978 ORTHO05D007472 0.0e+00 1183.3 1168 52.4
Sopen04g036610 Solanum pennellii HOM05D005978 ORTHO05D007472 0.0e+00 1182.2 1165 52.5
THA.LOC104812025 Tarenaya hassleriana HOM05D005978 ORTHO05D007472 0.0e+00 1182.2 1167 54.3
MSTRG.14837 Avicennia marina HOM05D005978 ORTHO05D007472 0.0e+00 1181.8 1175 52.0
Hund05194 Selenicereus undatus HOM05D005978 ORTHO05D007472 0.0e+00 1175.2 1179 52.8
Aa31LG4G6720 Aethionema arabicum HOM05D005978 ORTHO05D007472 0.0e+00 1173.7 1165 55.5
Lsat_1_v5_gn_9_48081 Lactuca sativa HOM05D005978 ORTHO05D007472 0.0e+00 1166.0 1167 53.2
CAN.G1330.32 Capsicum annuum HOM05D005978 ORTHO05D007472 0.0e+00 1157.1 1186 50.7
Aqoxy1G03258 Aquilegia oxysepala HOM05D005978 ORTHO05D007472 0.0e+00 1149.8 1166 52.0
Gohir.A05G177300 Gossypium hirsutum HOM05D005978 ORTHO05D007472 0.0e+00 1136.3 1037 57.5
Psat4g213520 Pisum sativum HOM05D005978 ORTHO05D007472 0.0e+00 1134.0 1052 56.2
Ca_24335_v3 Cicer arietinum L. HOM05D005978 ORTHO05D007472 0.0e+00 1110.9 1048 55.0
EL10Ac1g01856 Beta vulgaris HOM05D005978 ORTHO05D007472 0.0e+00 1105.5 1171 50.6
HPP92_007456 Vanilla planifolia HOM05D005978 ORTHO05D007472 0.0e+00 1085.9 1173 49.4
SGA_v2.0_scaffold34G13893 Striga asiatica HOM05D005978 ORTHO05D007472 2.1e-310 1069.3 1133 50.4
Sc26g0004780 Simmondsia chinensis HOM05D005978 ORTHO05D007472 6.8e-309 1064.3 1173 48.5
FAN08G2840 Fragaria x ananassa HOM05D005978 ORTHO05D007472 4.0e-301 1038.5 1100 52.2
Os10g0548200 Oryza sativa ssp. japonica HOM05D005978 ORTHO05D007472 9.8e-300 1033.9 1187 46.8
Peaxi162Scf00385g01220 Petunia axillaris HOM05D005978 ORTHO05D007472 1.5e-292 1010.0 1204 46.7
Zm00001eb022830 Zea mays HOM05D005978 ORTHO05D007472 9.5e-287 990.7 1182 45.8
ATR0605G322 Amborella trichopoda HOM05D005978 ORTHO05D007472 1.8e-285 986.5 1115 49.0
Solyc04g082980.2 Solanum lycopersicum HOM05D005978 ORTHO05D007472 1.9e-282 976.5 1110 48.1
SEGI_31935 Sequoiadendron giganteum HOM05D005978 ORTHO05D007472 5.1e-280 968.4 1171 45.9
AUR62035192 Chenopodium quinoa HOM05D005978 ORTHO05D007472 7.1e-274 948.0 1161 45.9
DCAR_022963 Daucus carota HOM05D005978 ORTHO05D007472 2.2e-251 873.2 827 55.3
CSS0007221 Camellia sinensis var. sinensis HOM05D005978 ORTHO05D007472 9.0e-245 851.3 770 57.4
Ah.11g042550 Amaranthus hybridus HOM05D005978 ORTHO05D007472 3.8e-227 792.7 786 53.9
Gohir.D05G180700 Gossypium hirsutum HOM05D005978 ORTHO05D007472 3.7e-222 776.2 716 57.1
unitig_899.g15248 Utricularia gibba HOM05D005978 ORTHO05D007472 7.2e-218 761.9 1127 40.9
Nitab4.5_0003364g0020 Nicotiana tabacum HOM05D005978 ORTHO05D007472 1.2e-193 681.4 756 48.9
Mapoly0002s0268 Marchantia polymorpha HOM05D005978 ORTHO05D007472 7.8e-180 635.6 1191 34.1
Oeu013500.1 Olea europaea HOM05D005978 ORTHO05D007472 2.0e-175 620.9 595 53.1
Pp3c9_11110 Physcomitrium patens HOM05D005978 ORTHO05D007472 1.1e-154 552.0 1194 33.2
CDE04G2732 Ceratophyllum demersum HOM05D005978 ORTHO05D007472 5.6e-146 523.1 611 47.6
Dinv04443 Davidia involucrata HOM05D005978 ORTHO05D007472 9.3e-133 479.2 461 52.9
Dinv04441 Davidia involucrata HOM05D005978 ORTHO05D007472 4.6e-132 476.9 441 56.5
SMO236G0050 Selaginella moellendorffii HOM05D005978 ORTHO05D007472 4.6e-124 450.3 1115 31.2
AagrBONN_evm.TU.Sc2ySwM_228.3882 Anthoceros agrestis HOM05D005978 ORTHO05D007472 5.9e-119 433.3 836 33.1
vmacro21736 Vaccinium macrocarpon HOM05D005978 ORTHO05D007472 4.6e-116 423.7 390 55.4
SMO236G0024 Selaginella moellendorffii HOM05D005978 ORTHO05D007472 1.7e-97 362.1 526 39.0
Ah.11g042540 Amaranthus hybridus HOM05D005978 ORTHO05D007472 2.2e-89 335.1 423 42.1
Nitab4.5_0003364g0080 Nicotiana tabacum HOM05D005978 ORTHO05D007472 5.9e-87 327.0 394 47.0
SHI07937 Sapria himalayana HOM05D005978 ORTHO05D007472 8.0e-76 290.0 299 49.5
Nn6g31559 Nelumbo nucifera HOM05D005978 ORTHO05D007472 3.3e-69 268.1 195 65.6
Oeu013502.1 Olea europaea HOM05D005978 ORTHO05D007472 6.0e-63 247.3 195 60.5
Dinv04442 Davidia involucrata HOM05D005978 ORTHO05D007472 8.0e-60 236.9 176 67.6
CDE04G3357 Ceratophyllum demersum HOM05D005978 ORTHO05D007472 1.1e-48 199.9 311 42.1
arahy.Tifrunner.gnm1.ann1.G030KM Arachis hypogaea HOM05D005978 ORTHO05D007472 6.2e-44 184.1 236 46.6
Gohir.D05G180650 Gossypium hirsutum HOM05D005978 ORTHO05D007472 1.1e-43 183.3 203 48.3
CBR_g3864 Chara braunii HOM05D000019 ORTHO05D000048 1.9e-40 172.6 1075 23.4
SMO124G0009 Selaginella moellendorffii HOM05D005978 ORTHO05D007472 1.7e-33 149.4 215 36.7
CSS0044033 Camellia sinensis var. sinensis HOM05D005978 ORTHO05D007472 2.1e-31 142.5 120 60.8
SHI07938 Sapria himalayana HOM05D005978 ORTHO05D007472 8.1e-28 130.6 147 46.9
MCO08G135 Micromonas commoda HOM05D005978 ORTHO05D007472 9.3e-16 90.5 504 23.4
Rhsim06G0014600 Rhododendron simsii HOM05D000267 ORTHO05D002764 3.0e-14 85.5 107 46.7
arahy.Tifrunner.gnm1.ann1.IN83YX Arachis hypogaea HOM05D005978 ORTHO05D007472 3.9e-14 85.1 58 62.1
arahy.Tifrunner.gnm1.ann1.HEP796 Arachis hypogaea HOM05D005978 ORTHO05D007472 1.6e-12 79.7 53 64.2
SHI07939 Sapria himalayana HOM05D005978 ORTHO05D007472 6.2e-12 77.8 114 43.9
Cre12.g493550 Chlamydomonas reinhardtii HOM05D005978 ORTHO05D007472 8.2e-12 77.4 356 27.5
TAR628G1490 Trochodendron aralioides HOM05D005978 ORTHO05D007472 2.4e-11 75.9 58 58.6
Prupe.4G218400 Prunus persica HOM05D005978 ORTHO05D007472 9.0e-11 73.9 53 67.9
C07p29320 Brassica napus HOM05D005978 ORTHO05D007472 1.9e-08 66.2 48 58.3
BolC7t43475H Brassica oleracea HOM05D005978 ORTHO05D007472 4.2e-08 65.1 48 58.3
Solyc04g082990.3 Solanum lycopersicum HOM05D005978 ORTHO05D004271 5.5e-08 64.7 73 46.6
arahy.Tifrunner.gnm1.ann1.5RG0UU Arachis hypogaea HOM05D006523 ORTHO05D008212 2.3e-06 59.3 54 53.7


User provided reference genes

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