Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C016702.2 Cucumis melo HOM05D002824 ORTHO05D008771 3.1e-87 325.1 163 100.0
CsaV3_4G033730 Cucumis sativus L. HOM05D002824 ORTHO05D008771 7.9e-67 257.3 142 91.5
ClCG11G018100 Citrullus lanatus HOM05D002824 ORTHO05D008771 5.3e-63 244.6 144 88.9
Sed0016999 Sechium edule HOM05D002824 ORTHO05D008771 2.7e-59 232.3 142 83.1
Lj3g0012155 Lotus japonicus HOM05D002824 ORTHO05D008771 7.5e-33 144.4 116 68.1
QL08p021656 Quercus lobata HOM05D002824 ORTHO05D008771 3.1e-31 139.0 139 57.6
VMungo1215G1991 Vigna mungo HOM05D002824 ORTHO05D008771 4.1e-31 138.7 137 61.3
Psat4g172920 Pisum sativum HOM05D002824 ORTHO05D008771 1.6e-30 136.7 107 68.2
Manes.07G025200 Manihot esculenta HOM05D002824 ORTHO05D008771 2.0e-30 136.3 93 71.0
TPR.G40092 Trifolium pratense HOM05D002824 ORTHO05D008771 2.0e-30 136.3 112 66.1
Lalb_Chr01g0006541 Lupinus albus HOM05D002824 ORTHO05D008771 2.7e-30 136.0 95 72.6
arahy.Tifrunner.gnm1.ann1.RFE8PP Arachis hypogaea HOM05D002824 ORTHO05D008771 5.9e-30 134.8 122 65.6
Glyma.17G080200 Glycine max HOM05D002824 ORTHO05D008771 1.0e-29 134.0 100 74.0
Phvul.003G183400 Phaseolus vulgaris HOM05D002824 ORTHO05D008771 1.0e-29 134.0 135 59.3
Potri.018G038900 Populus trichocarpa HOM05D002824 ORTHO05D008771 1.0e-29 134.0 83 77.1
Medtr8g061130 Medicago truncatula HOM05D002824 ORTHO05D008771 1.7e-29 133.3 128 61.7
Manes.10G116800 Manihot esculenta HOM05D002824 ORTHO05D008771 2.9e-29 132.5 140 55.7
Sabra06G0188500 Salix brachista HOM05D002824 ORTHO05D008771 2.9e-29 132.5 91 72.5
Potri.006G241100 Populus trichocarpa HOM05D002824 ORTHO05D008771 6.6e-29 131.3 91 71.4
Eucgr.G00343 Eucalyptus grandis HOM05D002824 ORTHO05D008771 8.6e-29 131.0 90 68.9
CiPaw.11G169000 Carya illinoinensis HOM05D002824 ORTHO05D008771 1.1e-28 130.6 145 50.3
PGR042G2139 Punica granatum HOM05D002824 ORTHO05D008771 1.9e-28 129.8 137 54.0
Glyma.05G019600 Glycine max HOM05D002824 ORTHO05D008771 2.5e-28 129.4 141 58.9
FAN11G2965 Fragaria x ananassa HOM05D002824 ORTHO05D008771 1.6e-27 126.7 141 53.9
FAN21G0827 Fragaria x ananassa HOM05D002824 ORTHO05D008771 2.1e-27 126.3 141 53.9
Nitab4.5_0000676g0190 Nicotiana tabacum HOM05D002824 ORTHO05D008771 2.1e-27 126.3 71 78.9
Nitab4.5_0005206g0060 Nicotiana tabacum HOM05D002824 ORTHO05D008771 2.1e-27 126.3 71 78.9
Peaxi162Scf00652g00418 Petunia axillaris HOM05D002824 ORTHO05D008771 2.1e-27 126.3 71 78.9
Atru.chr9.2077 Acer truncatum HOM05D002824 ORTHO05D008771 4.7e-27 125.2 126 54.8
Prupe.4G182300 Prunus persica HOM05D002824 ORTHO05D008771 6.1e-27 124.8 84 71.4
Solyc12g098350.1 Solanum lycopersicum HOM05D002824 ORTHO05D008771 6.1e-27 124.8 71 77.5
Sopen12g033130 Solanum pennellii HOM05D002824 ORTHO05D008771 6.1e-27 124.8 71 77.5
PGSC0003DMG400007705 Solanum tuberosum HOM05D002824 ORTHO05D008771 6.1e-27 124.8 71 77.5
Ciclev10022760m.g Citrus clementina HOM05D002824 ORTHO05D008771 8.0e-27 124.4 130 53.8
Hma1.2p1_0818F.1_g223320 Hydrangea macrophylla HOM05D002824 ORTHO05D008771 8.0e-27 124.4 70 80.0
Atru.chr1.2540 Acer truncatum HOM05D002824 ORTHO05D008771 1.0e-26 124.0 85 70.6
HanXRQChr00c0394g0574551 Helianthus annuus HOM05D002824 ORTHO05D008771 1.4e-26 123.6 70 78.6
HanXRQChr00c0593g0576361 Helianthus annuus HOM05D002824 ORTHO05D008771 1.4e-26 123.6 70 78.6
HanXRQChr00c0925g0577891 Helianthus annuus HOM05D002824 ORTHO05D008771 1.4e-26 123.6 70 78.6
HanXRQChr01g0020221 Helianthus annuus HOM05D002824 ORTHO05D008771 1.4e-26 123.6 70 78.6
HanXRQChr04g0127491 Helianthus annuus HOM05D002824 ORTHO05D008771 1.4e-26 123.6 70 78.6
HanXRQChr05g0152571 Helianthus annuus HOM05D002824 ORTHO05D008771 1.4e-26 123.6 70 78.6
HanXRQChr10g0284381 Helianthus annuus HOM05D002824 ORTHO05D008771 1.4e-26 123.6 70 78.6
HanXRQChr10g0318061 Helianthus annuus HOM05D002824 ORTHO05D008771 1.4e-26 123.6 70 78.6
HanXRQChr11g0321091 Helianthus annuus HOM05D002824 ORTHO05D008771 1.4e-26 123.6 70 78.6
HanXRQChr11g0326961 Helianthus annuus HOM05D002824 ORTHO05D008771 1.4e-26 123.6 70 78.6
HanXRQChr12g0369851 Helianthus annuus HOM05D002824 ORTHO05D008771 1.4e-26 123.6 70 78.6
HanXRQChr15g0486561 Helianthus annuus HOM05D002824 ORTHO05D008771 1.4e-26 123.6 70 78.6
HanXRQCPg0580181 Helianthus annuus HOM05D002824 ORTHO05D008771 1.4e-26 123.6 70 78.6
DCAR_032520 Daucus carota HOM05D002824 ORTHO05D008771 4.0e-26 122.1 70 75.7
PSO548G0003 Papaver somniferum HOM05D002824 ORTHO05D008771 4.0e-26 122.1 70 77.1
Sc25g0002050 Simmondsia chinensis HOM05D000964 ORTHO05D001488 6.8e-26 121.3 70 78.6
Aqoxy7G01548 Aquilegia oxysepala HOM05D002824 ORTHO05D008771 1.2e-25 120.6 80 68.8
Thecc.03G290100 Theobroma cacao HOM05D002824 ORTHO05D008771 1.2e-25 120.6 70 80.0
CAN.G767.42 Capsicum annuum HOM05D002824 ORTHO05D008771 1.5e-25 120.2 71 74.6
Gohir.A12G232300 Gossypium hirsutum HOM05D002824 ORTHO05D008771 1.5e-25 120.2 70 80.0
Duzib205G1549 Durio zibethinus HOM05D002824 ORTHO05D008771 3.4e-25 119.0 70 78.6
Gohir.D12G235100 Gossypium hirsutum HOM05D002824 ORTHO05D008771 4.4e-25 118.6 136 50.7
Gorai.008G251300 Gossypium raimondii HOM05D002824 ORTHO05D008771 4.4e-25 118.6 136 50.7
COL.COLO4_21755 Corchorus olitorius HOM05D002824 ORTHO05D008771 5.7e-25 118.2 70 78.6
Ah.10g027210 Amaranthus hybridus HOM05D000964 ORTHO05D001488 9.8e-25 117.5 74 71.6
Ah.10g027340 Amaranthus hybridus HOM05D000964 ORTHO05D001488 9.8e-25 117.5 74 71.6
Ah.10g027460 Amaranthus hybridus HOM05D000964 ORTHO05D001488 9.8e-25 117.5 74 71.6
EL10Ac5g11668 Beta vulgaris HOM05D002824 ORTHO05D008771 1.3e-24 117.1 70 75.7
Duzib084G0020 Durio zibethinus HOM05D002824 ORTHO05D008771 2.8e-24 115.9 70 77.1
Ah.10g028980 Amaranthus hybridus HOM05D000964 ORTHO05D001488 8.3e-24 114.4 74 70.3
MD11G1244000 Malus domestica HOM05D002824 ORTHO05D008771 1.1e-23 114.0 95 61.1
Sc16g0004450 Simmondsia chinensis HOM05D002824 ORTHO05D008771 1.1e-23 114.0 70 74.3
Prupe.4G182400 Prunus persica HOM05D002824 ORTHO05D008771 4.1e-23 112.1 131 48.9
Cpa.g.sc321.5 Carica papaya HOM05D002824 ORTHO05D008771 1.2e-22 110.5 64 81.2
Oeu054718.1 Olea europaea HOM05D002824 ORTHO05D008771 1.2e-22 110.5 70 72.9
Lsat_1_v5_gn_2_136980 Lactuca sativa HOM05D002824 ORTHO05D008771 2.7e-22 109.4 77 63.6
THA.LOC104814832 Tarenaya hassleriana HOM05D002824 ORTHO05D008771 1.1e-20 104.0 76 65.8
Ca_24278_v3 Cicer arietinum L. HOM05D002824 ORTHO05D008771 1.5e-20 103.6 54 90.7
BcaB05g23855 Brassica carinata HOM05D002824 ORTHO05D008771 1.9e-20 103.2 79 68.4
A09p28030 Brassica napus HOM05D002824 ORTHO05D008771 1.9e-20 103.2 79 68.4
BraA09t38371Z Brassica rapa HOM05D002824 ORTHO05D008771 1.9e-20 103.2 79 68.4
Hund29957 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.9e-20 103.2 90 53.3
AL6G45360 Arabidopsis lyrata HOM05D002824 ORTHO05D008771 2.5e-20 102.8 79 67.1
BcaB01g01596 Brassica carinata HOM05D002824 ORTHO05D008771 2.5e-20 102.8 79 67.1
BcaC04g21113 Brassica carinata HOM05D002824 ORTHO05D008771 2.5e-20 102.8 79 67.1
C09p35540 Brassica napus HOM05D002824 ORTHO05D008771 2.5e-20 102.8 79 67.1
BolC9t56393H Brassica oleracea HOM05D002824 ORTHO05D008771 2.5e-20 102.8 79 67.1
Carub.0006s3001 Capsella rubella HOM05D002824 ORTHO05D008771 2.5e-20 102.8 79 67.1
CARHR255400 Cardamine hirsuta HOM05D002824 ORTHO05D008771 2.5e-20 102.8 79 67.1
Thhalv10029051m.g Eutrema salsugineum HOM05D002824 ORTHO05D008771 2.5e-20 102.8 79 67.1
Medtr0002s0770 Medicago truncatula HOM05D002824 ORTHO05D008771 2.5e-20 102.8 66 71.2
Sp6g06240 Schrenkiella parvula HOM05D002824 ORTHO05D008771 2.5e-20 102.8 79 67.1
AT4G11175 Arabidopsis thaliana HOM05D002824 ORTHO05D008771 3.3e-20 102.4 76 65.8
Aa31LG9G11000 Aethionema arabicum HOM05D002824 ORTHO05D008771 4.3e-20 102.1 76 65.8
HanXRQChr02g0052601 Helianthus annuus HOM05D002824 ORTHO05D008771 7.3e-20 101.3 57 78.9
Hund04057 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.6e-19 100.1 76 60.5
Hund08802 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.6e-19 100.1 76 60.5
Hund12527 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.6e-19 100.1 76 60.5
Hund19320 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.6e-19 100.1 76 60.5
Hund27962 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.6e-19 100.1 76 60.5
Hund27985 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.6e-19 100.1 76 60.5
Hund28109 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.6e-19 100.1 76 60.5
Hund28268 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.6e-19 100.1 76 60.5
Hund28459 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.6e-19 100.1 76 60.5
Hund28519 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.6e-19 100.1 76 60.5
Hund28529 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.6e-19 100.1 76 60.5
Hund28632 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.6e-19 100.1 76 60.5
Hund28678 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.6e-19 100.1 76 60.5
Hund28746 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.6e-19 100.1 76 60.5
Hund28759 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.6e-19 100.1 76 60.5
Hund28778 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.6e-19 100.1 76 60.5
Hund28846 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.6e-19 100.1 76 60.5
Hund29022 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.6e-19 100.1 76 60.5
Hund29036 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.6e-19 100.1 76 60.5
Hund29217 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.6e-19 100.1 76 60.5
Hund29505 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.6e-19 100.1 76 60.5
Hund29525 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.6e-19 100.1 76 60.5
Hund29537 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.6e-19 100.1 76 60.5
Hund29554 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.6e-19 100.1 76 60.5
Hund29593 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.6e-19 100.1 76 60.5
Hund29605 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.6e-19 100.1 76 60.5
Hund29612 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.6e-19 100.1 76 60.5
Hund29682 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.6e-19 100.1 76 60.5
Hund30031 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.6e-19 100.1 76 60.5
Hund30069 Selenicereus undatus HOM05D002824 ORTHO05D008771 1.6e-19 100.1 76 60.5
Hund30272 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.6e-19 100.1 76 60.5
Hund30490 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.6e-19 100.1 76 60.5
Hund30495 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.6e-19 100.1 76 60.5
Hund30544 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.6e-19 100.1 76 60.5
Hund27578 Selenicereus undatus HOM05D002824 ORTHO05D007162 4.7e-19 98.6 76 59.2
FvH4_3g20270 Fragaria vesca HOM05D002824 ORTHO05D008771 1.4e-18 97.1 123 50.4
FAN16G1250 Fragaria x ananassa HOM05D002824 ORTHO05D008771 1.4e-18 97.1 123 50.4
FAN25G0310 Fragaria x ananassa HOM05D002824 ORTHO05D008771 1.8e-18 96.7 123 50.4
RcHm_v2.0_Chr5g0034161 Rosa chinensis HOM05D002824 ORTHO05D008771 1.8e-18 96.7 126 50.0
SMO358G0035 Selaginella moellendorffii HOM05D002824 ORTHO05D008771 3.1e-18 95.9 71 62.0
Lsat_1_v5_gn_0_41600 Lactuca sativa HOM05D000964 ORTHO05D004047 5.2e-18 95.1 68 67.6
Lsat_1_v5_gn_2_92080 Lactuca sativa HOM05D000964 ORTHO05D004047 5.2e-18 95.1 68 67.6
Lsat_1_v5_gn_3_81720 Lactuca sativa HOM05D000964 ORTHO05D003870 5.2e-18 95.1 68 67.6
Lsat_1_v5_gn_6_69061 Lactuca sativa HOM05D000964 ORTHO05D004047 5.2e-18 95.1 68 67.6
Lsat_1_v5_gn_8_146180 Lactuca sativa HOM05D000964 ORTHO05D003870 5.2e-18 95.1 68 67.6
Sc20g0004270 Simmondsia chinensis HOM05D000964 ORTHO05D001488 1.3e-16 90.5 72 63.9
Lsat_1_v5_gn_5_50421 Lactuca sativa HOM05D000964 ORTHO05D003870 2.2e-16 89.7 60 70.0
Hund26844 Selenicereus undatus HOM05D000964 ORTHO05D001488 3.7e-16 89.0 72 58.3
PSO782G5188 Papaver somniferum HOM05D002824 ORTHO05D008771 6.4e-16 88.2 68 64.7
Sc20g0003000 Simmondsia chinensis HOM05D002824 ORTHO05D008771 1.9e-15 86.7 50 76.0
Hund29164 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.4e-15 86.3 61 63.9
Peaxi162Scf00299g00114 Petunia axillaris HOM05D002824 ORTHO05D007162 7.0e-15 84.7 70 60.0
Ca_29478_v3 Cicer arietinum L. HOM05D002824 ORTHO05D008771 3.5e-14 82.4 69 52.2
PRCOL_00002279 Prasinoderma coloniale HOM05D002824 ORTHO05D008771 2.5e-12 76.3 65 53.8
Cc09_g05310 Coffea canephora HOM05D002824 ORTHO05D008771 4.3e-12 75.5 69 58.0
Hund31501 Selenicereus undatus HOM05D002824 ORTHO05D007162 7.3e-12 74.7 53 62.3
vmacro22400 Vaccinium macrocarpon HOM05D000964 ORTHO05D001488 9.5e-12 74.3 58 60.3
vmacro22425 Vaccinium macrocarpon HOM05D000964 ORTHO05D001488 9.5e-12 74.3 58 60.3
RcHm_v2.0_CPg0501881 Rosa chinensis HOM05D002824 ORTHO05D008771 2.8e-11 72.8 53 60.4
Cre04.g218700 Chlamydomonas reinhardtii HOM05D002824 ORTHO05D008771 1.4e-10 70.5 117 37.6
MELO3C027648.2 Cucumis melo HOM05D002824 ORTHO05D008771 1.5e-09 67.0 72 54.2
Nn002s41361 Nelumbo nucifera HOM05D002824 ORTHO05D008771 3.4e-09 65.9 35 82.9
Nn021s41523 Nelumbo nucifera HOM05D002824 ORTHO05D008771 3.4e-09 65.9 35 82.9
Nn070s42371 Nelumbo nucifera HOM05D002824 ORTHO05D008771 3.4e-09 65.9 35 82.9
FAN10G1907 Fragaria x ananassa HOM05D002824 ORTHO05D005776 1.3e-08 63.9 62 50.0
ClCG00G003150 Citrullus lanatus HOM05D002824 ORTHO05D008771 4.9e-08 62.0 45 66.7
FAN22G0293 Fragaria x ananassa HOM05D002824 ORTHO05D008771 1.1e-07 60.8 62 48.4
Nitab4.5_0006114g0040 Nicotiana tabacum HOM05D000388 ORTHO05D009867 1.1e-07 60.8 39 69.2
Nitab4.5_0000173g0110 Nicotiana tabacum HOM05D002824 ORTHO05D007162 5.4e-07 58.5 43 60.5
ClCG11G017170 Citrullus lanatus HOM05D002824 ORTHO05D008771 9.2e-07 57.8 42 64.3
MELO3C032365.2 Cucumis melo HOM05D002824 ORTHO05D008771 9.2e-07 57.8 72 48.6
MBI15_g40528_MAGBIO Magnolia biondii HOM05D002824 ORTHO05D008771 1.6e-06 57.0 36 72.2
MELO3C033566.2 Cucumis melo HOM05D002824 ORTHO05D008771 3.5e-06 55.8 72 45.8


User provided reference genes

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