Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C015663.2 Cucumis melo HOM05D004156 ORTHO05D005259 4.1e-171 604.7 331 100.0
CsaV3_1G042300 Cucumis sativus L. HOM05D004156 ORTHO05D005259 2.3e-166 589.0 331 94.0
ClCG03G013780 Citrullus lanatus HOM05D004156 ORTHO05D005259 3.0e-153 545.4 332 86.7
Sed0021765 Sechium edule HOM05D004156 ORTHO05D005259 1.4e-134 483.4 330 78.8
Sed0019954 Sechium edule HOM05D004156 ORTHO05D005259 3.4e-133 478.8 332 77.4
Gorai.001G041600 Gossypium raimondii HOM05D004156 ORTHO05D005259 2.4e-131 472.6 334 75.7
Gohir.D07G039500 Gossypium hirsutum HOM05D004156 ORTHO05D005259 9.3e-131 470.7 334 75.4
GSVIVG01027072001 Vitis vinifera HOM05D004156 ORTHO05D005259 1.6e-130 469.9 323 78.3
Cfa002719 Carpinus fangiana HOM05D004156 ORTHO05D005259 2.7e-130 469.2 311 77.8
Gohir.A07G035500 Gossypium hirsutum HOM05D004156 ORTHO05D005259 2.7e-130 469.2 334 74.6
Haze_24995 Corylus avellana HOM05D004156 ORTHO05D005259 1.7e-129 466.5 313 77.0
CiPaw.07G232300 Carya illinoinensis HOM05D004156 ORTHO05D005259 2.3e-129 466.1 317 78.2
COL.COLO4_05789 Corchorus olitorius HOM05D004156 ORTHO05D005259 3.9e-129 465.3 327 78.0
GSVIVG01027422001 Vitis vinifera HOM05D004156 ORTHO05D005259 3.9e-129 465.3 306 79.4
Nn8g39422 Nelumbo nucifera HOM05D004156 ORTHO05D005259 8.7e-129 464.2 314 76.8
Duzib150G1332 Durio zibethinus HOM05D004156 ORTHO05D005259 1.1e-128 463.8 336 74.7
Gorai.009G018400 Gossypium raimondii HOM05D004156 ORTHO05D005259 3.3e-128 462.2 335 74.0
Prupe.7G241100 Prunus persica HOM05D004156 ORTHO05D005259 3.3e-128 462.2 331 74.6
Thecc.09G124800 Theobroma cacao HOM05D004156 ORTHO05D005259 4.3e-128 461.8 333 74.5
Manes.14G131500 Manihot esculenta HOM05D004156 ORTHO05D005259 9.6e-128 460.7 341 72.1
Gohir.A05G017100 Gossypium hirsutum HOM05D004156 ORTHO05D005259 1.3e-127 460.3 337 74.2
Actinidia35394 Actinidia chinensis HOM05D004156 ORTHO05D005259 6.2e-127 458.0 288 79.9
Dinv36535 Davidia involucrata HOM05D004156 ORTHO05D003047 6.2e-127 458.0 325 72.9
arahy.Tifrunner.gnm1.ann1.KP5LKI Arachis hypogaea HOM05D004156 ORTHO05D005259 1.4e-126 456.8 333 73.3
FAN23G0721 Fragaria x ananassa HOM05D004156 ORTHO05D005259 2.4e-126 456.1 317 74.8
FAN19G1880 Fragaria x ananassa HOM05D004156 ORTHO05D005259 3.1e-126 455.7 317 74.8
FAN28G2743 Fragaria x ananassa HOM05D004156 ORTHO05D005259 3.1e-126 455.7 317 74.8
FvH4_1g03500 Fragaria vesca HOM05D004156 ORTHO05D005259 5.3e-126 454.9 317 74.8
Glyma.13G167900 Glycine max HOM05D004156 ORTHO05D005259 9.0e-126 454.1 331 74.3
FAN26G1774 Fragaria x ananassa HOM05D004156 ORTHO05D005259 1.5e-125 453.4 317 74.4
Hma1.2p1_0018F.1_g012530 Hydrangea macrophylla HOM05D004156 ORTHO05D005259 5.8e-125 451.4 324 72.8
ClCG06G011000 Citrullus lanatus HOM05D004156 ORTHO05D005259 7.6e-125 451.1 323 74.0
Glyma.17G115500 Glycine max HOM05D004156 ORTHO05D005259 9.9e-125 450.7 327 74.3
Phvul.003G163900 Phaseolus vulgaris HOM05D004156 ORTHO05D005259 6.4e-124 448.0 332 72.0
VMungo1215G1862 Vigna mungo HOM05D004156 ORTHO05D005259 1.1e-123 447.2 331 71.9
MD15G1174800 Malus domestica HOM05D004156 ORTHO05D005259 2.4e-123 446.0 326 72.7
Phvul.009G258100 Phaseolus vulgaris HOM05D004156 ORTHO05D005259 5.4e-123 444.9 329 71.4
VMungo1309G1108 Vigna mungo HOM05D004156 ORTHO05D005259 9.3e-123 444.1 333 72.1
Lj7C630T1 Lonicera japonica HOM05D004156 ORTHO05D005259 2.7e-122 442.6 322 71.4
arahy.Tifrunner.gnm1.ann1.FDU8BE Arachis hypogaea HOM05D004156 ORTHO05D005259 4.6e-122 441.8 331 71.0
DCAR_014878 Daucus carota HOM05D004156 ORTHO05D005259 6.0e-122 441.4 290 76.9
MD02G1034000 Malus domestica HOM05D004156 ORTHO05D005259 7.9e-122 441.0 335 71.0
CSS0011304 Camellia sinensis var. sinensis HOM05D004156 ORTHO05D005259 1.0e-121 440.7 329 75.1
Eucgr.E02428 Eucalyptus grandis HOM05D004156 ORTHO05D005259 3.0e-121 439.1 316 71.8
TAR625G0545 Trochodendron aralioides HOM05D004156 ORTHO05D005259 3.0e-121 439.1 320 73.4
Lj4g0019515 Lotus japonicus HOM05D004156 ORTHO05D005259 5.1e-121 438.3 325 70.8
Psat2g006920 Pisum sativum HOM05D004156 ORTHO05D005259 5.1e-121 438.3 332 70.8
Cpa.g.sc1199.3 Carica papaya HOM05D004156 ORTHO05D005259 8.7e-121 437.6 292 76.0
Solyc12g006550.2 Solanum lycopersicum HOM05D004156 ORTHO05D005259 8.7e-121 437.6 326 69.6
Sopen12g002500 Solanum pennellii HOM05D004156 ORTHO05D005259 1.1e-120 437.2 326 69.6
Nitab4.5_0005139g0050 Nicotiana tabacum HOM05D004156 ORTHO05D005259 3.3e-120 435.6 332 69.6
PGSC0003DMG400018964 Solanum tuberosum HOM05D004156 ORTHO05D005259 4.3e-120 435.3 326 69.9
Ciclev10008881m.g Citrus clementina HOM05D004156 ORTHO05D005259 7.4e-120 434.5 326 70.6
Nitab4.5_0010819g0030 Nicotiana tabacum HOM05D004156 ORTHO05D005259 9.6e-120 434.1 332 69.6
QL02p088083 Quercus lobata HOM05D004156 ORTHO05D005259 9.6e-120 434.1 328 72.0
CANSAT11G1878 Cannabis sativa HOM05D004156 ORTHO05D005259 1.3e-119 433.7 330 70.9
PGR102G0554 Punica granatum HOM05D004156 ORTHO05D005259 4.8e-119 431.8 308 72.4
Cc06_g08630 Coffea canephora HOM05D004156 ORTHO05D005259 6.2e-119 431.4 323 71.2
CAN.G594.20 Capsicum annuum HOM05D004156 ORTHO05D005259 1.1e-118 430.6 307 72.3
MSTRG.12622 Avicennia marina HOM05D004156 ORTHO05D005259 3.1e-118 429.1 323 69.7
Atru.chr7.278 Acer truncatum HOM05D004156 ORTHO05D005259 4.0e-118 428.7 335 73.1
HanXRQChr06g0181321 Helianthus annuus HOM05D004156 ORTHO05D005259 5.3e-118 428.3 322 68.0
MBI01_g37801_MAGBIO Magnolia biondii HOM05D004156 ORTHO05D005259 6.9e-118 427.9 314 76.1
Potri.005G231000 Populus trichocarpa HOM05D004156 ORTHO05D005259 6.9e-118 427.9 291 73.9
RcHm_v2.0_Chr2g0088711 Rosa chinensis HOM05D004156 ORTHO05D005259 9.0e-118 427.6 314 72.0
THA.LOC104806527 Tarenaya hassleriana HOM05D004156 ORTHO05D005259 3.4e-117 425.6 331 68.6
TWI32G0547 Tripterygium wilfordii HOM05D004156 ORTHO05D005259 3.4e-117 425.6 342 70.5
Sabra05G0178400 Salix brachista HOM05D004156 ORTHO05D000382 2.2e-116 422.9 303 71.6
DCAR_017823 Daucus carota HOM05D004156 ORTHO05D005259 4.9e-116 421.8 360 64.7
THA.LOC104805714 Tarenaya hassleriana HOM05D004156 ORTHO05D005259 4.9e-116 421.8 329 70.2
Sc14g0000240 Simmondsia chinensis HOM05D004156 ORTHO05D005259 8.4e-116 421.0 291 73.2
Lsat_1_v5_gn_9_120581 Lactuca sativa HOM05D004156 ORTHO05D005259 1.4e-115 420.2 326 66.9
Lalb_Chr12g0197861 Lupinus albus HOM05D004156 ORTHO05D005259 1.4e-115 420.2 329 69.6
Peaxi162Scf00274g00336 Petunia axillaris HOM05D004156 ORTHO05D005259 7.1e-115 417.9 311 71.1
Ah.14g087130 Amaranthus hybridus HOM05D004156 ORTHO05D005259 3.5e-114 415.6 292 72.6
ECA247G0053 Erigeron canadensis HOM05D004156 ORTHO05D005259 7.9e-114 414.5 331 65.0
HanXRQChr07g0187411 Helianthus annuus HOM05D004156 ORTHO05D005259 7.9e-114 414.5 328 65.9
Aqoxy2G02204 Aquilegia oxysepala HOM05D004156 ORTHO05D005259 1.0e-113 414.1 285 72.3
PSO210G0875 Papaver somniferum HOM05D004156 ORTHO05D005259 1.3e-113 413.7 293 72.0
Aa31LG5G23180 Aethionema arabicum HOM05D004156 ORTHO05D005259 3.0e-113 412.5 330 67.0
Rhsim03G0247600 Rhododendron simsii HOM05D004156 ORTHO05D005259 8.7e-113 411.0 394 61.7
AL4G34970 Arabidopsis lyrata HOM05D004156 ORTHO05D005259 1.9e-112 409.8 320 68.4
Aqoxy6G01405 Aquilegia oxysepala HOM05D004156 ORTHO05D005259 4.3e-112 408.7 283 72.1
unitig_21.g20656 Utricularia gibba HOM05D004156 ORTHO05D005259 4.3e-112 408.7 317 67.2
PSO832G0272 Papaver somniferum HOM05D004156 ORTHO05D005259 9.6e-112 407.5 293 71.3
SGA_v2.0_scaffold35G14133 Striga asiatica HOM05D004156 ORTHO05D005259 9.6e-112 407.5 323 68.1
vmacro22115 Vaccinium macrocarpon HOM05D004156 ORTHO05D005259 9.6e-112 407.5 340 67.6
HPP92_015694 Vanilla planifolia HOM05D004156 ORTHO05D005259 6.2e-111 404.8 314 72.9
Carub.0004s1996 Capsella rubella HOM05D004156 ORTHO05D005259 1.4e-110 403.7 319 67.4
Thhalv10016958m.g Eutrema salsugineum HOM05D004156 ORTHO05D005259 1.8e-110 403.3 322 67.1
Gohir.D05G018000 Gossypium hirsutum HOM05D004156 ORTHO05D005259 9.0e-110 401.0 259 77.6
TWI34G0257 Tripterygium wilfordii HOM05D004156 ORTHO05D005259 9.0e-110 401.0 376 62.8
Sp4g20310 Schrenkiella parvula HOM05D004156 ORTHO05D005259 1.5e-109 400.2 317 67.2
AT2G37990 Arabidopsis thaliana HOM05D004156 ORTHO05D005259 2.0e-109 399.8 320 66.2
Medtr2g008870 Medicago truncatula HOM05D004156 ORTHO05D005259 2.0e-109 399.8 333 64.3
AUR62013371 Chenopodium quinoa HOM05D004156 ORTHO05D005259 5.8e-109 398.3 292 68.5
A03p21000 Brassica napus HOM05D004156 ORTHO05D005259 7.6e-109 397.9 317 67.2
BraA03t11339Z Brassica rapa HOM05D004156 ORTHO05D005259 7.6e-109 397.9 317 67.2
TPR.G25243 Trifolium pratense HOM05D004156 ORTHO05D005259 2.2e-108 396.4 334 65.0
A04p29140 Brassica napus HOM05D004156 ORTHO05D005259 2.9e-108 396.0 317 66.9
CiPaw.15G031800 Carya illinoinensis HOM05D004156 ORTHO05D005259 3.8e-108 395.6 285 73.3
Oeu055874.1 Olea europaea HOM05D004156 ORTHO05D005259 3.8e-108 395.6 312 68.6
BcaNung06518 Brassica carinata HOM05D004156 ORTHO05D005259 6.5e-108 394.8 317 67.2
BcaC01g05579 Brassica carinata HOM05D004156 ORTHO05D005259 1.9e-107 393.3 317 66.2
C04p66350 Brassica napus HOM05D004156 ORTHO05D005259 1.9e-107 393.3 317 66.6
BolC3t14862H Brassica oleracea HOM05D004156 ORTHO05D005259 1.9e-107 393.3 317 66.2
SGA_v2.0_scaffold224G42948 Striga asiatica HOM05D004156 ORTHO05D005259 1.9e-107 393.3 343 63.6
BcaC02g12926 Brassica carinata HOM05D004156 ORTHO05D005259 2.5e-107 392.9 317 66.2
BraA04t18383Z Brassica rapa HOM05D004156 ORTHO05D005259 2.5e-107 392.9 317 66.6
CARHR132550 Cardamine hirsuta HOM05D004156 ORTHO05D005259 2.5e-107 392.9 321 67.3
ATR0730G095 Amborella trichopoda HOM05D004156 ORTHO05D005259 3.2e-107 392.5 311 67.2
AUR62011120 Chenopodium quinoa HOM05D004156 ORTHO05D005259 7.1e-107 391.3 302 66.6
EL10Ac8g18639 Beta vulgaris HOM05D004156 ORTHO05D005259 1.6e-106 390.2 331 63.4
Lalb_Chr07g0178901 Lupinus albus HOM05D004156 ORTHO05D005259 1.6e-106 390.2 298 72.8
BolC4t28140H Brassica oleracea HOM05D004156 ORTHO05D005259 7.4e-104 381.3 320 65.3
CDE04G1546 Ceratophyllum demersum HOM05D004156 ORTHO05D005259 3.7e-103 379.0 285 68.1
BcaNung06338 Brassica carinata HOM05D004156 ORTHO05D005259 2.4e-102 376.3 317 65.0
SalBow5G0058 Salvia bowleyana HOM05D004156 ORTHO05D005259 2.4e-102 376.3 406 53.4
Os04g0685100 Oryza sativa ssp. japonica HOM05D004156 ORTHO05D005259 6.9e-102 374.8 314 67.8
Migut.L01695 Erythranthe guttata HOM05D004156 ORTHO05D005259 9.0e-102 374.4 331 65.6
BcaB01g03735 Brassica carinata HOM05D004156 ORTHO05D005259 2.0e-101 373.2 335 61.8
Gohir.D08G025232 Gossypium hirsutum HOM05D004156 ORTHO05D005259 3.4e-101 372.5 390 57.7
Hund09135 Selenicereus undatus HOM05D004156 ORTHO05D005259 7.6e-101 371.3 350 61.4
Zm00001eb122260 Zea mays HOM05D004156 ORTHO05D005259 1.1e-99 367.5 320 63.1
Actinidia26780 Actinidia chinensis HOM05D004156 ORTHO05D005259 8.7e-97 357.8 333 61.3
SEGI_31652 Sequoiadendron giganteum HOM05D004156 ORTHO05D005259 2.0e-93 346.7 330 56.4
Atru.chr7.1220 Acer truncatum HOM05D004156 ORTHO05D005259 7.2e-91 338.2 296 62.2
Ca_00137_v3 Cicer arietinum L. HOM05D004156 ORTHO05D000741 7.9e-90 334.7 346 56.9
Sc18g0000640 Simmondsia chinensis HOM05D004156 ORTHO05D005259 4.2e-83 312.4 291 58.4
Mapoly0036s0028 Marchantia polymorpha HOM05D004156 ORTHO05D005259 7.2e-83 311.6 325 55.1
AagrBONN_evm.TU.Sc2ySwM_368.2845 Anthoceros agrestis HOM05D004156 ORTHO05D005259 6.1e-82 308.5 286 58.0
Zm00001eb337040 Zea mays HOM05D004156 ORTHO05D005259 1.4e-81 307.4 319 55.5
BraA05t19767Z Brassica rapa HOM05D004156 ORTHO05D005259 3.9e-81 305.8 314 57.0
C03p24730 Brassica napus HOM05D004156 ORTHO05D005259 2.6e-80 303.1 317 56.5
A05p08010 Brassica napus HOM05D004156 ORTHO05D005259 7.4e-80 301.6 310 57.1
SMO351G0347 Selaginella moellendorffii HOM05D004156 ORTHO05D005259 3.2e-75 286.2 251 59.4
CBR_g18768 Chara braunii HOM05D004156 ORTHO05D005259 4.8e-71 272.3 316 50.6
Pp3c3_32550 Physcomitrium patens HOM05D004156 ORTHO05D005259 1.6e-69 267.3 328 49.7
TAR626G0974 Trochodendron aralioides HOM05D004156 ORTHO05D005259 9.4e-67 258.1 181 74.6
Oeu045226.1 Olea europaea HOM05D004156 ORTHO05D005259 2.7e-66 256.5 325 48.9
BolC4t22574H Brassica oleracea HOM05D004156 ORTHO05D005259 4.7e-66 255.8 270 55.2
HanXRQChr06g0181331 Helianthus annuus HOM05D004156 ORTHO05D005259 8.8e-65 251.5 167 74.9
BcaB02g09228 Brassica carinata HOM05D004156 ORTHO05D005259 1.2e-64 251.1 220 66.4
BcaC02g11942 Brassica carinata HOM05D004156 ORTHO05D005259 2.7e-61 240.0 255 56.9
C04p09670 Brassica napus HOM05D004156 ORTHO05D005259 6.8e-57 225.3 235 57.9
C03p24670 Brassica napus HOM05D004156 ORTHO05D005259 3.5e-53 213.0 158 67.7
Gohir.A08G014600 Gossypium hirsutum HOM05D004156 ORTHO05D005259 9.5e-51 204.9 137 80.3
BcaC02g11940 Brassica carinata HOM05D004156 ORTHO05D005259 4.0e-49 199.5 175 65.1
Nitab4.5_0002556g0050 Nicotiana tabacum HOM05D004156 ORTHO05D005259 3.7e-47 193.0 190 60.0
TAR383G1033 Trochodendron aralioides HOM05D004156 ORTHO05D005259 3.3e-43 179.9 161 66.5
Cre01.g020950 Chlamydomonas reinhardtii HOM05D004156 ORTHO05D005259 5.6e-43 179.1 301 40.2
Os06g0142050 Oryza sativa ssp. japonica HOM05D004156 ORTHO05D005259 1.7e-36 157.5 151 62.3
Actinidia37158 Actinidia chinensis HOM05D004156 ORTHO05D005259 1.8e-33 147.5 118 70.3
BcaC09g49789 Brassica carinata HOM05D004156 ORTHO05D005259 3.7e-31 139.8 137 59.9
PRCOL_00002162 Prasinoderma coloniale HOM05D004156 ORTHO05D005259 1.9e-30 137.5 306 35.9
MCO03G226 Micromonas commoda HOM05D004156 ORTHO05D005259 4.1e-30 136.3 294 36.1
BcaNung06017 Brassica carinata HOM05D004156 ORTHO05D005259 4.4e-24 116.3 81 65.4
AagrBONN_evm.TU.Sc2ySwM_228.5043 Anthoceros agrestis HOM05D004156 ORTHO05D005259 1.4e-22 111.3 111 53.2
Nn8g39426 Nelumbo nucifera HOM05D004156 ORTHO05D005259 3.2e-22 110.2 101 59.4
C01p32910 Brassica napus HOM05D004156 ORTHO05D005259 3.3e-19 100.1 99 57.6
AagrBONN_evm.TU.Sc2ySwM_228.5042 Anthoceros agrestis HOM05D004156 ORTHO05D005259 1.8e-17 94.4 89 53.9
Rhsim11G0147700 Rhododendron simsii HOM05D004156 ORTHO05D338749 3.4e-16 90.1 61 77.0
Psat0s2088g0120 Pisum sativum HOM05D001944 ORTHO05D002405 1.2e-08 65.1 38 86.8
Zm00001eb060690 Zea mays HOM05D004156 ORTHO05D005259 1.2e-08 65.1 52 61.5
Zm00001eb433790 Zea mays HOM05D003078 ORTHO05D446193 1.2e-08 65.1 50 62.0
Actinidia26746 Actinidia chinensis HOM05D004156 ORTHO05D054118 1.3e-07 61.6 68 52.9
TAR636G0452 Trochodendron aralioides HOM05D000809 ORTHO05D007735 1.3e-07 61.6 43 67.4
Glyma.20G228801 Glycine max HOM05D004156 ORTHO05D211242 3.8e-07 60.1 93 47.3
TAR626G1412 Trochodendron aralioides HOM05D004156 ORTHO05D005259 5.4e-06 56.2 107 40.2


User provided reference genes

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