Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C015276.2 Cucumis melo HOM05D006444 ORTHO05D007748 2.8e-188 661.8 328 100.0
CsaV3_1G038500 Cucumis sativus L. HOM05D006444 ORTHO05D007748 1.0e-166 590.1 328 89.3
ClCG03G017520 Citrullus lanatus HOM05D006444 ORTHO05D007748 7.2e-144 514.2 326 79.1
Sed0009356 Sechium edule HOM05D006444 ORTHO05D007748 1.4e-134 483.4 326 74.2
Haze_04092 Corylus avellana HOM05D006444 ORTHO05D007748 3.4e-101 372.5 329 58.1
Dinv30860 Davidia involucrata HOM05D006444 ORTHO05D007748 4.3e-96 355.5 328 56.4
Potri.005G020600 Populus trichocarpa HOM05D006444 ORTHO05D007748 1.6e-95 353.6 328 54.6
Ciclev10001747m.g Citrus clementina HOM05D006444 ORTHO05D007748 2.8e-95 352.8 330 56.7
Glyma.19G230000 Glycine max HOM05D006444 ORTHO05D007748 2.4e-94 349.7 327 55.4
QL03p017976 Quercus lobata HOM05D006444 ORTHO05D007748 5.8e-93 345.1 327 53.8
Rhsim11G0093000 Rhododendron simsii HOM05D006444 ORTHO05D007748 7.6e-93 344.7 328 55.2
Sabra05G0026600 Salix brachista HOM05D006444 ORTHO05D007748 9.9e-93 344.4 328 54.3
PGR031G3221 Punica granatum HOM05D006444 ORTHO05D007748 2.2e-92 343.2 328 53.7
COL.COLO4_04127 Corchorus olitorius HOM05D006444 ORTHO05D007748 3.8e-92 342.4 327 52.9
Glyma.03G233000 Glycine max HOM05D006444 ORTHO05D007748 4.9e-92 342.0 327 55.4
arahy.Tifrunner.gnm1.ann1.T18680 Arachis hypogaea HOM05D006444 ORTHO05D007748 1.4e-91 340.5 327 54.1
Thecc.05G319500 Theobroma cacao HOM05D006444 ORTHO05D007748 2.4e-91 339.7 329 54.1
arahy.Tifrunner.gnm1.ann1.I0464U Arachis hypogaea HOM05D006444 ORTHO05D007748 3.5e-90 335.9 327 53.2
Phvul.001G226600 Phaseolus vulgaris HOM05D006444 ORTHO05D007748 3.5e-90 335.9 327 53.5
CiPaw.07G026800 Carya illinoinensis HOM05D006444 ORTHO05D007748 3.0e-89 332.8 316 55.1
vmacro01541 Vaccinium macrocarpon HOM05D006444 ORTHO05D007748 5.1e-89 332.0 328 53.4
CSS0047685 Camellia sinensis var. sinensis HOM05D006444 ORTHO05D007748 2.5e-88 329.7 329 52.9
Lalb_Chr18g0045971 Lupinus albus HOM05D006444 ORTHO05D007748 9.6e-88 327.8 328 52.1
Manes.09G174800 Manihot esculenta HOM05D006444 ORTHO05D007748 2.1e-87 326.6 329 51.4
Gorai.004G237700 Gossypium raimondii HOM05D006444 ORTHO05D007748 4.8e-87 325.5 327 51.4
Gohir.A08G207200 Gossypium hirsutum HOM05D006444 ORTHO05D007748 1.4e-86 323.9 327 51.1
Gohir.D08G223800 Gossypium hirsutum HOM05D006444 ORTHO05D007748 1.8e-86 323.6 327 51.4
Ca_09322_v3 Cicer arietinum L. HOM05D006444 ORTHO05D007748 3.1e-86 322.8 329 53.2
GSVIVG01031202001 Vitis vinifera HOM05D006444 ORTHO05D007748 3.1e-86 322.8 328 50.9
Hma1.2p1_0472F.1_g159820 Hydrangea macrophylla HOM05D006444 ORTHO05D007748 9.0e-86 321.2 348 52.6
Medtr7g112320 Medicago truncatula HOM05D006444 ORTHO05D007748 1.5e-85 320.5 327 51.7
TPR.G1652 Trifolium pratense HOM05D006444 ORTHO05D007748 1.5e-85 320.5 327 51.1
Prupe.6G316100 Prunus persica HOM05D006444 ORTHO05D007748 2.0e-85 320.1 330 51.5
VMungo1383G3166 Vigna mungo HOM05D006444 ORTHO05D007748 1.3e-84 317.4 327 51.4
Cc10_g14110 Coffea canephora HOM05D006444 ORTHO05D007748 6.4e-84 315.1 329 52.0
TAR365G0240 Trochodendron aralioides HOM05D006444 ORTHO05D007748 9.3e-83 311.2 355 50.1
Atru.chr2.132 Acer truncatum HOM05D006444 ORTHO05D007748 2.7e-82 309.7 327 51.1
Eucgr.H03280 Eucalyptus grandis HOM05D006444 ORTHO05D007748 1.0e-81 307.8 328 49.7
TWI56G1276 Tripterygium wilfordii HOM05D006444 ORTHO05D007748 1.8e-81 307.0 328 50.6
MSTRG.20391 Avicennia marina HOM05D006444 ORTHO05D007748 2.3e-81 306.6 323 51.4
Lj1g0016861 Lotus japonicus HOM05D006444 ORTHO05D007748 6.7e-81 305.1 338 49.7
FAN02G1429 Fragaria x ananassa HOM05D006444 ORTHO05D007748 2.5e-80 303.1 330 48.2
FAN05G1290 Fragaria x ananassa HOM05D006444 ORTHO05D007748 3.7e-79 299.3 330 47.9
FAN14G0724 Fragaria x ananassa HOM05D006444 ORTHO05D007748 4.8e-79 298.9 330 47.9
FvH4_6g07110 Fragaria vesca HOM05D006444 ORTHO05D007748 1.8e-78 297.0 330 47.6
Nitab4.5_0014337g0020 Nicotiana tabacum HOM05D006444 ORTHO05D007748 1.8e-78 297.0 329 50.2
Cpa.g.sc48.132 Carica papaya HOM05D006444 ORTHO05D007748 4.0e-78 295.8 374 44.4
Nn4g25689 Nelumbo nucifera HOM05D006444 ORTHO05D007748 6.9e-78 295.0 340 48.5
Nitab4.5_0002715g0070 Nicotiana tabacum HOM05D006444 ORTHO05D007748 1.2e-77 294.3 329 49.8
RcHm_v2.0_Chr3g0456691 Rosa chinensis HOM05D006444 ORTHO05D007748 1.2e-77 294.3 330 47.0
Peaxi162Scf00073g00128 Petunia axillaris HOM05D006444 ORTHO05D007748 2.0e-77 293.5 331 49.5
Hund21734 Selenicereus undatus HOM05D006444 ORTHO05D007748 2.2e-76 290.0 333 47.4
CANSAT54G2069 Cannabis sativa HOM05D006444 ORTHO05D007748 3.8e-76 289.3 329 49.8
DCAR_025267 Daucus carota HOM05D006444 ORTHO05D007748 1.1e-75 287.7 318 48.4
Lsat_1_v5_gn_7_73840 Lactuca sativa HOM05D006444 ORTHO05D007748 1.1e-75 287.7 330 47.3
Migut.B00986 Erythranthe guttata HOM05D006444 ORTHO05D007748 1.9e-75 287.0 344 48.3
Nn3g21596 Nelumbo nucifera HOM05D006444 ORTHO05D007748 4.2e-75 285.8 340 46.2
Oeu045894.1 Olea europaea HOM05D006444 ORTHO05D007748 7.1e-75 285.0 317 48.3
Sopen01g043670 Solanum pennellii HOM05D006444 ORTHO05D007748 3.5e-74 282.7 328 48.8
Lj5A342G70 Lonicera japonica HOM05D006444 ORTHO05D007748 7.9e-74 281.6 275 56.4
Oeu028007.2 Olea europaea HOM05D006444 ORTHO05D007748 3.0e-73 279.6 336 46.1
Phvul.007G199800 Phaseolus vulgaris HOM05D006444 ORTHO05D007748 3.9e-73 279.3 284 50.7
Glyma.10G148900 Glycine max HOM05D006444 ORTHO05D007748 8.7e-73 278.1 327 45.9
VMungo0720G1741 Vigna mungo HOM05D006444 ORTHO05D007748 1.1e-72 277.7 285 49.8
CAN.G1273.16 Capsicum annuum HOM05D006444 ORTHO05D007748 2.5e-72 276.6 361 46.0
PGSC0003DMG400024779 Solanum tuberosum HOM05D006444 ORTHO05D007748 2.5e-72 276.6 355 45.9
HanXRQChr15g0495151 Helianthus annuus HOM05D006444 ORTHO05D007748 1.6e-71 273.9 333 47.4
ATR0706G081 Amborella trichopoda HOM05D006444 ORTHO05D007748 2.1e-71 273.5 308 46.4
SalBow7G4019 Salvia bowleyana HOM05D006444 ORTHO05D007748 4.8e-71 272.3 316 46.5
EL10Ac4g09842 Beta vulgaris HOM05D006444 ORTHO05D007748 4.1e-70 269.2 333 47.1
ECA236G3124 Erigeron canadensis HOM05D006444 ORTHO05D007748 7.6e-69 265.0 314 45.5
SGA_v2.0_scaffold4G01962 Striga asiatica HOM05D006444 ORTHO05D007748 1.0e-68 264.6 329 46.5
THA.LOC104818740 Tarenaya hassleriana HOM05D006444 ORTHO05D007748 7.9e-66 255.0 331 46.5
PSO357G0038 Papaver somniferum HOM05D006444 ORTHO05D007748 1.9e-64 250.4 344 43.3
PSO170G3086 Papaver somniferum HOM05D006444 ORTHO05D007748 3.3e-64 249.6 344 43.3
Sp2g21090 Schrenkiella parvula HOM05D006444 ORTHO05D007748 3.3e-64 249.6 323 44.0
Psat3g013840 Pisum sativum HOM05D006444 ORTHO05D007748 5.7e-64 248.8 255 51.0
Aa31LG11G9750 Aethionema arabicum HOM05D006444 ORTHO05D007748 1.6e-63 247.3 331 45.6
Aqoxy2G02847 Aquilegia oxysepala HOM05D006444 ORTHO05D007748 1.6e-63 247.3 353 42.8
Duzib151G0636 Durio zibethinus HOM05D006444 ORTHO05D007748 8.2e-63 245.0 340 41.8
BolC7t44660H Brassica oleracea HOM05D006444 ORTHO05D007748 2.4e-62 243.4 325 43.7
A06p37110 Brassica napus HOM05D006444 ORTHO05D007748 4.1e-62 242.7 325 44.3
BraA06t26637Z Brassica rapa HOM05D006444 ORTHO05D007748 4.1e-62 242.7 325 44.3
CDE09G1197 Ceratophyllum demersum HOM05D006444 ORTHO05D007748 4.1e-62 242.7 196 60.7
AUR62000705 Chenopodium quinoa HOM05D006444 ORTHO05D007748 9.1e-62 241.5 299 46.2
AUR62005256 Chenopodium quinoa HOM05D006444 ORTHO05D007748 9.1e-62 241.5 299 46.5
Thecc.04G293900 Theobroma cacao HOM05D006444 ORTHO05D007748 5.9e-61 238.8 280 45.0
Prupe.1G126500 Prunus persica HOM05D006444 ORTHO05D007748 6.5e-60 235.3 213 56.8
CARHR186630 Cardamine hirsuta HOM05D006444 ORTHO05D007748 5.5e-59 232.3 328 40.9
unitig_46.g18373 Utricularia gibba HOM05D006444 ORTHO05D007748 1.2e-58 231.1 337 42.7
Thhalv10004624m.g Eutrema salsugineum HOM05D006444 ORTHO05D007748 1.6e-58 230.7 333 42.6
C07p41320 Brassica napus HOM05D006444 ORTHO05D007748 2.1e-58 230.3 350 40.6
Ciclev10005435m.g Citrus clementina HOM05D006444 ORTHO05D007748 4.6e-58 229.2 274 44.9
Carub.0006s2458 Capsella rubella HOM05D006444 ORTHO05D007748 1.0e-57 228.0 329 41.0
AL6G38850 Arabidopsis lyrata HOM05D006444 ORTHO05D007748 6.7e-57 225.3 324 41.7
AT5G26940 Arabidopsis thaliana HOM05D006444 ORTHO05D007748 8.8e-57 224.9 323 41.5
Hund21730 Selenicereus undatus HOM05D006444 ORTHO05D007748 9.7e-56 221.5 272 47.4
CDE02G1332 Ceratophyllum demersum HOM05D006444 ORTHO05D007748 1.7e-55 220.7 281 45.2
Os03g0301400 Oryza sativa ssp. japonica HOM05D006444 ORTHO05D007748 2.2e-55 220.3 301 43.5
MD13G1159900 Malus domestica HOM05D006444 ORTHO05D007748 3.7e-55 219.5 238 49.6
Zm00001eb014130 Zea mays HOM05D006444 ORTHO05D007748 4.8e-55 219.2 309 41.1
HPP92_011867 Vanilla planifolia HOM05D006444 ORTHO05D007748 5.3e-54 215.7 264 43.2
Sc16g0008870 Simmondsia chinensis HOM05D006444 ORTHO05D007748 6.9e-54 215.3 258 46.1
RcHm_v2.0_Chr4g0424201 Rosa chinensis HOM05D006444 ORTHO05D007748 1.2e-53 214.5 258 46.5
MBI19_g14287_MAGBIO Magnolia biondii HOM05D006444 ORTHO05D007748 3.9e-49 199.5 240 45.4
AagrBONN_evm.TU.Sc2ySwM_344.4230 Anthoceros agrestis HOM05D006444 ORTHO05D007748 1.0e-44 184.9 197 50.3
FAN07G1328 Fragaria x ananassa HOM05D006444 ORTHO05D007748 3.8e-44 183.0 240 44.2
Os04g0623400 Oryza sativa ssp. japonica HOM05D006444 ORTHO05D007748 2.5e-43 180.3 198 47.5
FvH4_4g19220 Fragaria vesca HOM05D006444 ORTHO05D007748 1.8e-41 174.1 238 42.0
Actinidia35534 Actinidia chinensis HOM05D006444 ORTHO05D007748 1.5e-40 171.0 208 44.2
TAR362G0047 Trochodendron aralioides HOM05D006444 ORTHO05D007748 4.4e-40 169.5 203 45.8
FAN12G0061 Fragaria x ananassa HOM05D006444 ORTHO05D007748 1.8e-38 164.1 238 41.2
Mapoly0162s0013 Marchantia polymorpha HOM05D006444 ORTHO05D007748 2.4e-38 163.7 203 44.3
FAN12G3514 Fragaria x ananassa HOM05D006444 ORTHO05D007748 4.1e-38 162.9 239 41.8
MD12G1208900 Malus domestica HOM05D006444 ORTHO05D007748 1.2e-37 161.4 194 46.4
SMO116G0265 Selaginella moellendorffii HOM05D006444 ORTHO05D007748 7.7e-37 158.7 194 44.3
MD12G1209000 Malus domestica HOM05D006444 ORTHO05D007748 8.0e-34 148.7 141 55.3
SEGI_10576 Sequoiadendron giganteum HOM05D006444 ORTHO05D007748 2.6e-32 143.7 157 49.0
FAN09G3591 Fragaria x ananassa HOM05D006444 ORTHO05D007748 8.3e-31 138.7 144 48.6
Pp3c18_14120 Physcomitrium patens HOM05D001061 ORTHO05D007748 2.4e-30 137.1 193 38.9
Atru.chr4.2940 Acer truncatum HOM05D006444 ORTHO05D007748 1.6e-26 124.4 126 48.4
MCO01G157 Micromonas commoda HOM05D005236 ORTHO05D006557 4.9e-23 112.8 179 36.9
Actinidia35535 Actinidia chinensis HOM05D006444 ORTHO05D007748 4.0e-17 93.2 82 62.2
PRCOL_00002449 Prasinoderma coloniale HOM05D005236 ORTHO05D006557 4.4e-16 89.7 205 31.2
EL10Ac4g09387 Beta vulgaris HOM05D006444 ORTHO05D007748 1.0e-12 78.6 80 53.8


User provided reference genes

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