Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C014122.2 Cucumis melo HOM05D003885 ORTHO05D004623 9.9e-134 480.3 281 100.0
ClCG10G004480 Citrullus lanatus HOM05D003885 ORTHO05D004623 2.8e-104 382.5 230 93.9
CsaV3_3G004310 Cucumis sativus L. HOM05D003885 ORTHO05D004623 1.1e-103 380.6 230 98.7
Sed0017804 Sechium edule HOM05D003885 ORTHO05D004623 3.8e-101 372.1 230 94.8
Glyma.17G141500 Glycine max HOM05D003885 ORTHO05D004623 6.5e-93 344.7 230 87.8
Sed0004751 Sechium edule HOM05D003885 ORTHO05D004623 1.4e-92 343.6 230 85.7
Haze_09860 Corylus avellana HOM05D003885 ORTHO05D004623 3.6e-91 339.0 231 82.7
VMungo0251G1810 Vigna mungo HOM05D003885 ORTHO05D004623 1.0e-90 337.4 230 86.5
Phvul.003G220300 Phaseolus vulgaris HOM05D003885 ORTHO05D004623 2.3e-90 336.3 230 88.7
Glyma.05G059200 Glycine max HOM05D003885 ORTHO05D004623 3.9e-90 335.5 230 85.7
Actinidia30379 Actinidia chinensis HOM05D003885 ORTHO05D004623 6.7e-90 334.7 231 81.8
Cfa016929 Carpinus fangiana HOM05D003885 ORTHO05D004623 8.8e-90 334.3 231 81.8
CSS0008032 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 1.7e-88 330.1 232 81.0
CSS0014433 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 1.7e-88 330.1 232 81.0
Lj1g0011673 Lotus japonicus HOM05D003885 ORTHO05D004623 4.8e-88 328.6 232 80.2
Lalb_Chr16g0386671 Lupinus albus HOM05D003885 ORTHO05D004623 6.3e-88 328.2 231 85.7
Nn1g07757 Nelumbo nucifera HOM05D003885 ORTHO05D004623 1.4e-87 327.0 231 80.1
TAR629G2602 Trochodendron aralioides HOM05D003885 ORTHO05D004623 1.4e-87 327.0 231 81.4
Ah.06g181560 Amaranthus hybridus HOM05D003885 ORTHO05D004623 1.8e-87 326.6 233 80.3
COL.COLO4_07729 Corchorus olitorius HOM05D003885 ORTHO05D004623 1.8e-87 326.6 231 80.5
Duzib213G0370 Durio zibethinus HOM05D003885 ORTHO05D004623 3.1e-87 325.9 231 83.5
TAR627G0008 Trochodendron aralioides HOM05D003885 ORTHO05D004623 4.1e-87 325.5 231 81.0
TPR.G2621 Trifolium pratense HOM05D003885 ORTHO05D004623 5.3e-87 325.1 231 79.2
arahy.Tifrunner.gnm1.ann1.JC0UDE Arachis hypogaea HOM05D003885 ORTHO05D004623 7.0e-87 324.7 232 85.3
Ca_21964_v3 Cicer arietinum L. HOM05D003885 ORTHO05D004623 9.1e-87 324.3 231 83.1
Lj4g0022976 Lotus japonicus HOM05D003885 ORTHO05D004623 9.1e-87 324.3 231 81.0
Atru.chr2.3832 Acer truncatum HOM05D003885 ORTHO05D004623 1.6e-86 323.6 231 82.7
Psat0s1834g0040 Pisum sativum HOM05D003885 ORTHO05D004623 1.6e-86 323.6 231 81.8
FAN14G2004 Fragaria x ananassa HOM05D003885 ORTHO05D004623 2.0e-86 323.2 232 78.9
Rhsim06G0232400 Rhododendron simsii HOM05D003885 ORTHO05D004623 4.5e-86 322.0 247 75.3
RcHm_v2.0_Chr3g0480061 Rosa chinensis HOM05D003885 ORTHO05D004623 4.5e-86 322.0 233 82.4
Medtr4g100970 Medicago truncatula HOM05D003885 ORTHO05D004623 5.9e-86 321.6 231 84.8
Ah.13g073470 Amaranthus hybridus HOM05D003885 ORTHO05D004623 7.7e-86 321.2 235 79.1
TWI39G1241 Tripterygium wilfordii HOM05D003885 ORTHO05D004623 7.7e-86 321.2 231 78.8
Ciclev10009386m.g Citrus clementina HOM05D003885 ORTHO05D004623 1.3e-85 320.5 231 82.3
Gorai.013G150700 Gossypium raimondii HOM05D003885 ORTHO05D004623 1.3e-85 320.5 233 81.5
Potri.001G370366 Populus trichocarpa HOM05D003885 ORTHO05D004623 1.3e-85 320.5 231 77.9
Gohir.D13G134400 Gossypium hirsutum HOM05D003885 ORTHO05D004623 2.9e-85 319.3 232 81.5
MD03G1032500 Malus domestica HOM05D003885 ORTHO05D004623 2.9e-85 319.3 232 77.6
Aa31LG8G410 Aethionema arabicum HOM05D003885 ORTHO05D004623 3.8e-85 318.9 232 78.4
CAN.G492.53 Capsicum annuum HOM05D003885 ORTHO05D004623 3.8e-85 318.9 230 85.7
Gohir.A13G131100 Gossypium hirsutum HOM05D003885 ORTHO05D004623 3.8e-85 318.9 232 81.5
Hund01874 Selenicereus undatus HOM05D003885 ORTHO05D004623 5.0e-85 318.5 232 81.9
Carub.0003s1256 Capsella rubella HOM05D003885 ORTHO05D004623 6.5e-85 318.2 232 78.0
MD11G1036400 Malus domestica HOM05D003885 ORTHO05D004623 6.5e-85 318.2 232 77.2
Hund01875 Selenicereus undatus HOM05D003885 ORTHO05D004623 6.5e-85 318.2 231 81.8
Thhalv10021450m.g Eutrema salsugineum HOM05D003885 ORTHO05D004623 8.5e-85 317.8 232 76.7
Thecc.07G008300 Theobroma cacao HOM05D003885 ORTHO05D004623 8.5e-85 317.8 230 78.7
BcaB06g25479 Brassica carinata HOM05D003885 ORTHO05D004623 1.5e-84 317.0 232 76.3
A05p36370 Brassica napus HOM05D003885 ORTHO05D004623 1.5e-84 317.0 232 76.3
BraA05t22437Z Brassica rapa HOM05D003885 ORTHO05D004623 1.5e-84 317.0 232 76.3
Manes.03G143400 Manihot esculenta HOM05D003885 ORTHO05D004623 1.9e-84 316.6 232 81.5
Sp3g11380 Schrenkiella parvula HOM05D003885 ORTHO05D004623 1.9e-84 316.6 232 76.3
A03p38080 Brassica napus HOM05D003885 ORTHO05D004623 3.2e-84 315.8 232 76.3
BraA03t12961Z Brassica rapa HOM05D003885 ORTHO05D004623 3.2e-84 315.8 232 76.3
CANSAT56G2895 Cannabis sativa HOM05D003885 ORTHO05D004623 3.2e-84 315.8 231 78.4
AL3G24950 Arabidopsis lyrata HOM05D003885 ORTHO05D004623 4.2e-84 315.5 232 77.6
Cc05_g15250 Coffea canephora HOM05D003885 ORTHO05D004623 4.2e-84 315.5 230 78.3
PGR083G1050 Punica granatum HOM05D003885 ORTHO05D004623 4.2e-84 315.5 231 80.5
DCAR_019010 Daucus carota HOM05D003885 ORTHO05D004623 5.5e-84 315.1 230 79.6
BolC3t16892H Brassica oleracea HOM05D003885 ORTHO05D004623 7.2e-84 314.7 233 75.5
Prupe.6G027200 Prunus persica HOM05D003885 ORTHO05D004623 7.2e-84 314.7 232 78.9
FAN05G2176 Fragaria x ananassa HOM05D003885 ORTHO05D004623 9.4e-84 314.3 233 79.0
FAN09G2902 Fragaria x ananassa HOM05D003885 ORTHO05D004623 9.4e-84 314.3 233 79.4
AT3G13200 Arabidopsis thaliana HOM05D003885 ORTHO05D004623 1.2e-83 313.9 232 77.6
FvH4_6g22570 Fragaria vesca HOM05D003885 ORTHO05D004623 1.6e-83 313.5 232 78.4
FAN14G0574 Fragaria x ananassa HOM05D003885 ORTHO05D004623 1.6e-83 313.5 232 78.4
Lj1C893G21 Lonicera japonica HOM05D003885 ORTHO05D004623 1.6e-83 313.5 230 74.3
QL08p003216 Quercus lobata HOM05D003885 ORTHO05D004623 2.1e-83 313.2 231 78.4
C01p51880 Brassica napus HOM05D003885 ORTHO05D004623 2.7e-83 312.8 232 77.2
C05p54750 Brassica napus HOM05D003885 ORTHO05D004623 2.7e-83 312.8 233 75.5
BolC1t05136H Brassica oleracea HOM05D003885 ORTHO05D004623 2.7e-83 312.8 232 75.4
BolC5t34149H Brassica oleracea HOM05D003885 ORTHO05D004623 2.7e-83 312.8 233 75.5
THA.LOC104815689 Tarenaya hassleriana HOM05D003885 ORTHO05D004623 4.7e-83 312.0 236 79.2
BcaB04g18746 Brassica carinata HOM05D003885 ORTHO05D004623 8.0e-83 311.2 230 75.7
Sc03g0011570 Simmondsia chinensis HOM05D003885 ORTHO05D004623 8.0e-83 311.2 232 82.8
HPP92_015188 Vanilla planifolia HOM05D003885 ORTHO05D004623 8.0e-83 311.2 235 76.6
A01p40350 Brassica napus HOM05D003885 ORTHO05D004623 1.0e-82 310.8 232 75.4
BraA01t04070Z Brassica rapa HOM05D003885 ORTHO05D004623 1.0e-82 310.8 232 75.4
CiPaw.12G140300 Carya illinoinensis HOM05D003885 ORTHO05D004623 1.0e-82 310.8 231 84.4
MSTRG.14500 Avicennia marina HOM05D003885 ORTHO05D004623 2.3e-82 309.7 230 83.0
CARHR087790 Cardamine hirsuta HOM05D003885 ORTHO05D004623 2.3e-82 309.7 232 76.3
Sopen07g033990 Solanum pennellii HOM05D003885 ORTHO05D004623 2.3e-82 309.7 230 81.3
DCAR_003369 Daucus carota HOM05D003885 ORTHO05D004623 4.0e-82 308.9 230 79.1
Os06g0106100 Oryza sativa ssp. japonica HOM05D003885 ORTHO05D004623 5.2e-82 308.5 232 74.1
THA.LOC104822723 Tarenaya hassleriana HOM05D003885 ORTHO05D004623 5.2e-82 308.5 232 77.2
Aqoxy3G02916 Aquilegia oxysepala HOM05D003885 ORTHO05D004623 6.7e-82 308.1 233 76.4
THA.LOC104810295 Tarenaya hassleriana HOM05D003885 ORTHO05D004623 8.8e-82 307.8 232 81.0
vmacro11612 Vaccinium macrocarpon HOM05D003885 ORTHO05D004623 1.2e-81 307.4 231 72.3
Lsat_1_v5_gn_5_188801 Lactuca sativa HOM05D003885 ORTHO05D004623 1.5e-81 307.0 232 81.0
Zm00001eb338740 Zea mays HOM05D003885 ORTHO05D004623 1.5e-81 307.0 232 75.0
Nitab4.5_0005478g0040 Nicotiana tabacum HOM05D003885 ORTHO05D004623 2.0e-81 306.6 232 73.3
PGSC0003DMG400022160 Solanum tuberosum HOM05D003885 ORTHO05D004623 1.7e-80 303.5 237 78.9
Solyc10g005800.3 Solanum lycopersicum HOM05D003885 ORTHO05D004623 2.8e-80 302.8 234 82.9
Sopen10g001770 Solanum pennellii HOM05D003885 ORTHO05D004623 2.8e-80 302.8 234 82.9
TWI38G2335 Tripterygium wilfordii HOM05D003885 ORTHO05D004623 3.7e-80 302.4 231 75.3
EL10Ac4g07536 Beta vulgaris HOM05D003885 ORTHO05D004623 8.2e-80 301.2 243 73.3
Nitab4.5_0010643g0040 Nicotiana tabacum HOM05D003885 ORTHO05D004623 8.2e-80 301.2 230 78.7
PGSC0003DMG400008684 Solanum tuberosum HOM05D003885 ORTHO05D004623 1.1e-79 300.8 232 80.2
Zm00001eb119790 Zea mays HOM05D003885 ORTHO05D004623 1.1e-79 300.8 233 73.4
Dinv40883 Davidia involucrata HOM05D003885 ORTHO05D004623 7.0e-79 298.1 231 71.9
GSVIVG01014735001 Vitis vinifera HOM05D003885 ORTHO05D004623 2.7e-78 296.2 232 80.6
AUR62017134 Chenopodium quinoa HOM05D003885 ORTHO05D004623 4.5e-78 295.4 233 69.5
BcaC05g29203 Brassica carinata HOM05D003885 ORTHO05D004623 5.9e-78 295.0 233 73.0
Peaxi162Scf00139g01026 Petunia axillaris HOM05D003885 ORTHO05D004623 5.9e-78 295.0 230 70.4
Lalb_Chr05g0221281 Lupinus albus HOM05D003885 ORTHO05D004623 1.0e-77 294.3 231 81.0
Phvul.008G217400 Phaseolus vulgaris HOM05D003885 ORTHO05D004623 1.0e-77 294.3 230 73.0
ATR1153G045 Amborella trichopoda HOM05D003885 ORTHO05D004623 2.9e-77 292.7 234 75.6
Oeu039420.1 Olea europaea HOM05D003885 ORTHO05D004623 5.0e-77 292.0 226 81.4
MBI11_g04749_MAGBIO Magnolia biondii HOM05D003885 ORTHO05D004623 8.5e-77 291.2 236 78.4
Eucgr.F02030 Eucalyptus grandis HOM05D003885 ORTHO05D004623 1.1e-76 290.8 233 76.4
SalBow2G3065 Salvia bowleyana HOM05D003885 ORTHO05D004623 1.5e-76 290.4 230 75.2
unitig_61.g26133 Utricularia gibba HOM05D003885 ORTHO05D004623 1.9e-76 290.0 233 78.5
ECA246G5298 Erigeron canadensis HOM05D003885 ORTHO05D004623 3.2e-76 289.3 230 74.8
MSTRG.13030 Avicennia marina HOM05D003885 ORTHO05D004623 7.2e-76 288.1 231 79.2
Nitab4.5_0003328g0110 Nicotiana tabacum HOM05D003885 ORTHO05D004623 1.6e-75 287.0 232 81.0
Hma1.2p1_0193F.1_g083890 Hydrangea macrophylla HOM05D003885 ORTHO05D004623 5.2e-74 282.0 285 58.9
Sabra16G0243800 Salix brachista HOM05D003885 ORTHO05D004623 5.2e-74 282.0 252 64.7
Duzib170G0277 Durio zibethinus HOM05D003885 ORTHO05D004623 8.8e-74 281.2 231 76.6
PSO210G5551 Papaver somniferum HOM05D003885 ORTHO05D004623 8.8e-74 281.2 231 71.9
AUR62035674 Chenopodium quinoa HOM05D003885 ORTHO05D004623 3.4e-73 279.3 233 67.0
PSO210G1946 Papaver somniferum HOM05D003885 ORTHO05D004623 3.4e-73 279.3 231 71.4
SalBow2G0786 Salvia bowleyana HOM05D003885 ORTHO05D004623 4.4e-73 278.9 230 78.7
SalBow2G1425 Salvia bowleyana HOM05D003885 ORTHO05D004623 2.8e-72 276.2 230 78.3
unitig_0.g990 Utricularia gibba HOM05D003885 ORTHO05D004623 8.3e-72 274.6 232 77.6
C03p46210 Brassica napus HOM05D003885 ORTHO05D004623 1.4e-71 273.9 231 68.8
SalBow2G3218 Salvia bowleyana HOM05D003885 ORTHO05D004623 1.4e-71 273.9 230 77.8
SalBow8G3434 Salvia bowleyana HOM05D003885 ORTHO05D004623 1.4e-71 273.9 230 77.8
Pp3c5_15120 Physcomitrium patens HOM05D003885 ORTHO05D004623 2.4e-71 273.1 234 67.9
FAN02G3468 Fragaria x ananassa HOM05D003885 ORTHO05D004623 3.1e-71 272.7 217 77.4
Mapoly0072s0064 Marchantia polymorpha HOM05D003885 ORTHO05D004623 3.1e-71 272.7 234 69.2
Migut.M01631 Erythranthe guttata HOM05D003885 ORTHO05D004623 8.6e-69 264.6 230 75.7
Lsat_1_v5_gn_5_2000 Lactuca sativa HOM05D003885 ORTHO05D004623 1.9e-68 263.5 271 66.4
HanXRQChr05g0160321 Helianthus annuus HOM05D003885 ORTHO05D004623 2.0e-65 253.4 231 74.0
HanXRQChr08g0233271 Helianthus annuus HOM05D003885 ORTHO05D004623 7.5e-65 251.5 231 73.2
AagrBONN_evm.TU.Sc2ySwM_228.690 Anthoceros agrestis HOM05D003885 ORTHO05D004623 1.7e-64 250.4 230 64.3
CBR_g58788 Chara braunii HOM05D003885 ORTHO05D004623 4.1e-63 245.7 232 64.7
Actinidia10568 Actinidia chinensis HOM05D003885 ORTHO05D004623 7.5e-57 224.9 187 73.8
Nitab4.5_0000152g0340 Nicotiana tabacum HOM05D003885 ORTHO05D004623 3.7e-56 222.6 254 60.2
SHI27704 Sapria himalayana HOM05D003885 ORTHO05D004623 3.2e-55 219.5 190 70.5
SMO356G0623 Selaginella moellendorffii HOM05D003885 ORTHO05D004623 7.3e-52 208.4 238 59.7
Nn1g07559 Nelumbo nucifera HOM05D003885 ORTHO05D004623 6.2e-51 205.3 147 82.3
CSS0035354 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 1.4e-50 204.1 231 61.0
TPR.G37597 Trifolium pratense HOM05D003885 ORTHO05D004623 2.0e-49 200.3 122 85.2
SGA_v2.0_scaffold8G04417 Striga asiatica HOM05D003885 ORTHO05D004623 7.5e-49 198.4 146 80.8
Hma1.2p1_0133F.1_g061250 Hydrangea macrophylla HOM05D003885 ORTHO05D004623 2.2e-48 196.8 121 84.3
MCO14G028 Micromonas commoda HOM05D003885 ORTHO05D004623 1.6e-46 190.7 234 54.7
CSS0032461 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 2.0e-46 190.3 188 68.1
CSS0021051 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 8.6e-45 184.9 121 79.3
SalBow2G2880 Salvia bowleyana HOM05D003885 ORTHO05D004623 3.3e-44 183.0 112 83.9
SalBow2G0143 Salvia bowleyana HOM05D003885 ORTHO05D004623 4.3e-44 182.6 112 83.0
SalBow2G2704 Salvia bowleyana HOM05D003885 ORTHO05D004623 4.7e-43 179.1 112 82.1
Cre24.g755447 Chlamydomonas reinhardtii HOM05D003885 ORTHO05D004623 5.2e-42 175.6 245 50.6
Solyc07g065800.3 Solanum lycopersicum HOM05D003885 ORTHO05D004623 2.2e-40 170.2 151 76.8
RcHm_v2.0_Chr1g0318721 Rosa chinensis HOM05D003885 ORTHO05D004623 4.1e-39 166.0 122 73.8
CAN.G1427.13 Capsicum annuum HOM05D000822 ORTHO05D004949 7.8e-38 161.8 138 76.1
Hma1.2p1_0133F.1_g061260 Hydrangea macrophylla HOM05D003885 ORTHO05D004623 1.9e-31 140.6 96 77.1
arahy.Tifrunner.gnm1.ann1.BGFV7A Arachis hypogaea HOM05D003885 ORTHO05D004623 5.4e-31 139.0 94 77.7
BcaC01g04006 Brassica carinata HOM05D003885 ORTHO05D004623 1.2e-30 137.9 96 71.9
MBI19_g41323_MAGBIO Magnolia biondii HOM05D003885 ORTHO05D004623 3.6e-27 126.3 70 87.1
TPR.G37600 Trifolium pratense HOM05D003885 ORTHO05D004623 9.0e-26 121.7 70 84.3
MCO14G027 Micromonas commoda HOM05D003885 ORTHO05D004623 2.0e-25 120.6 178 50.6
BcaB04g21002 Brassica carinata HOM05D003885 ORTHO05D004623 6.4e-24 115.5 88 65.9
SalBow8G5188 Salvia bowleyana HOM05D003885 ORTHO05D004623 6.4e-24 115.5 176 53.4
Zm00001eb157240 Zea mays HOM05D003885 ORTHO05D004623 8.4e-24 115.2 71 80.3
PRCOL_00003569 Prasinoderma coloniale HOM05D003885 ORTHO05D004623 4.2e-23 112.8 230 42.2
RcHm_v2.0_Chr3g0468911 Rosa chinensis HOM05D003885 ORTHO05D004623 1.2e-22 111.3 227 38.3
C05p54720 Brassica napus HOM05D003885 ORTHO05D004623 1.6e-22 110.9 96 62.5
COL.COLO4_09698 Corchorus olitorius HOM05D003885 ORTHO05D004623 6.6e-21 105.5 97 58.8
ATR0733G199 Amborella trichopoda HOM05D003885 ORTHO05D004623 2.2e-16 90.5 74 70.3
ATR0733G138 Amborella trichopoda HOM05D003885 ORTHO05D004623 6.4e-16 89.0 44 95.5
Lsat_1_v5_gn_8_106160 Lactuca sativa HOM05D003885 ORTHO05D004623 3.5e-14 83.2 56 73.2
CSS0001317 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 5.3e-10 69.3 89 49.4
Haze_27574 Corylus avellana HOM05D003885 ORTHO05D164292 1.2e-09 68.2 108 37.0
CSS0038981 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 1.5e-09 67.8 92 48.9
PSO384G2596 Papaver somniferum HOM05D003885 ORTHO05D004623 4.5e-09 66.2 72 50.0
Zm00001eb225910 Zea mays HOM05D003885 ORTHO05D444501 7.9e-06 55.5 48 66.7


User provided reference genes

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