Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C012001.2 Cucumis melo HOM05D004873 ORTHO05D006122 0.0e+00 1552.3 996 100.0
ClCG05G025280 Citrullus lanatus HOM05D004873 ORTHO05D006122 0.0e+00 1261.5 1090 80.7
CsaV3_5G031610 Cucumis sativus L. HOM05D004873 ORTHO05D006122 1.2e-301 1040.0 798 91.4
Sed0006362 Sechium edule HOM05D004873 ORTHO05D006122 4.1e-275 951.8 812 83.6
Atru.chr11.2013 Acer truncatum HOM05D004873 ORTHO05D006122 3.7e-215 752.7 1012 58.8
Duzib251G0436 Durio zibethinus HOM05D004873 ORTHO05D006122 1.1e-206 724.5 1006 55.9
TWI18G0605 Tripterygium wilfordii HOM05D004873 ORTHO05D006122 1.5e-205 720.7 1005 58.3
RcHm_v2.0_Chr4g0443951 Rosa chinensis HOM05D004873 ORTHO05D006122 2.7e-202 709.9 950 57.2
CiPaw.05G150500 Carya illinoinensis HOM05D004873 ORTHO05D006122 9.1e-198 694.9 1010 57.1
TWI36G0907 Tripterygium wilfordii HOM05D004873 ORTHO05D006122 1.7e-196 690.6 1003 59.2
Ciclev10030647m.g Citrus clementina HOM05D004873 ORTHO05D006122 2.9e-196 689.9 1007 56.3
TWI75G0297 Tripterygium wilfordii HOM05D004873 ORTHO05D006122 5.5e-195 685.6 1013 58.6
FAN22G1569 Fragaria x ananassa HOM05D004873 ORTHO05D006122 8.2e-191 671.8 1008 55.5
FvH4_4g34571 Fragaria vesca HOM05D004873 ORTHO05D006122 7.0e-190 668.7 1002 55.3
Nn4g22808 Nelumbo nucifera HOM05D004873 ORTHO05D006122 1.2e-189 667.9 1021 54.7
CANSAT01G1467 Cannabis sativa HOM05D004873 ORTHO05D006122 2.6e-189 666.8 963 56.3
Cfa009139 Carpinus fangiana HOM05D004873 ORTHO05D006122 1.0e-188 664.8 1037 57.6
TAR622G0484 Trochodendron aralioides HOM05D004873 ORTHO05D006122 1.7e-188 664.1 1019 56.3
FAN12G3868 Fragaria x ananassa HOM05D004873 ORTHO05D006122 3.2e-187 659.8 1001 54.9
GSVIVG01020233001 Vitis vinifera HOM05D004873 ORTHO05D006122 8.0e-186 655.2 863 59.3
Duzib248G0479 Durio zibethinus HOM05D004873 ORTHO05D006122 2.3e-185 653.7 1007 54.8
arahy.Tifrunner.gnm1.ann1.QGK7DH Arachis hypogaea HOM05D004873 ORTHO05D006122 4.0e-185 652.9 1082 55.5
arahy.Tifrunner.gnm1.ann1.SJZ9IC Arachis hypogaea HOM05D004873 ORTHO05D006122 4.0e-185 652.9 1058 55.4
Eucgr.B03347 Eucalyptus grandis HOM05D004873 ORTHO05D006122 1.5e-184 651.0 945 59.6
COL.COLO4_36971 Corchorus olitorius HOM05D004873 ORTHO05D006122 1.4e-182 644.4 897 49.7
Haze_12170 Corylus avellana HOM05D004873 ORTHO05D006122 1.8e-182 644.0 1048 54.5
CSS0025142 Camellia sinensis var. sinensis HOM05D004873 ORTHO05D006122 9.4e-179 631.7 1026 54.1
MBI15_g36943_MAGBIO Magnolia biondii HOM05D004873 ORTHO05D006122 2.1e-178 630.6 1035 55.2
FAN17G2310 Fragaria x ananassa HOM05D004873 ORTHO05D006122 7.5e-176 622.1 999 53.3
Manes.13G031000 Manihot esculenta HOM05D004873 ORTHO05D006122 9.8e-176 621.7 806 61.3
Glyma.01G031400 Glycine max HOM05D004873 ORTHO05D006122 5.4e-174 615.9 1004 55.0
TAR374G0217 Trochodendron aralioides HOM05D004873 ORTHO05D006122 2.9e-172 610.1 1035 52.0
Potri.008G147100 Populus trichocarpa HOM05D004873 ORTHO05D006122 6.1e-170 602.4 831 57.2
TPR.G13590 Trifolium pratense HOM05D004873 ORTHO05D006122 5.2e-169 599.4 1023 52.8
Medtr5g034430 Medicago truncatula HOM05D004873 ORTHO05D006122 6.8e-169 599.0 1019 52.8
FAN07G2437 Fragaria x ananassa HOM05D004873 ORTHO05D006122 2.0e-168 597.4 803 59.3
Hma1.2p1_0160F.1_g070740 Hydrangea macrophylla HOM05D004873 ORTHO05D006122 2.0e-168 597.4 959 52.3
Dinv24864 Davidia involucrata HOM05D004873 ORTHO05D006122 1.3e-167 594.7 825 56.6
VMungo1215G2983 Vigna mungo HOM05D004873 ORTHO05D006122 4.1e-166 589.7 1001 53.3
Ca_04600_v3 Cicer arietinum L. HOM05D004873 ORTHO05D006122 1.2e-165 588.2 1019 49.1
QL03p061438 Quercus lobata HOM05D004873 ORTHO05D006122 1.6e-165 587.8 812 59.2
Aqoxy3G02990_Aqoxy3G02991 Aquilegia oxysepala HOM05D004873 ORTHO05D006122 1.0e-164 585.1 954 53.7
Sabra10G0067000 Salix brachista HOM05D004873 ORTHO05D006122 1.4e-161 574.7 826 58.8
Dinv15307 Davidia involucrata HOM05D004873 ORTHO05D006122 3.1e-161 573.5 777 61.5
Lalb_Chr16g0392411 Lupinus albus HOM05D004873 ORTHO05D006122 1.2e-160 571.6 776 61.6
Prupe.1G254700 Prunus persica HOM05D004873 ORTHO05D006122 4.4e-160 569.7 807 59.1
MD13G1091200 Malus domestica HOM05D004873 ORTHO05D006122 3.7e-159 566.6 809 56.1
Potri.010G094700 Populus trichocarpa HOM05D004873 ORTHO05D006122 5.4e-158 562.8 941 54.8
MD16G1091700 Malus domestica HOM05D004873 ORTHO05D006122 2.7e-157 560.5 808 57.7
CAN.G376.10 Capsicum annuum HOM05D004873 ORTHO05D006122 6.0e-157 559.3 875 54.9
Cc11_g14610 Coffea canephora HOM05D004873 ORTHO05D006122 7.8e-157 558.9 1030 50.6
Lj6A805G39 Lonicera japonica HOM05D004873 ORTHO05D006122 2.5e-155 553.9 1073 48.4
Psat2g106600 Pisum sativum HOM05D004873 ORTHO05D006122 5.6e-155 552.7 785 58.1
Gorai.005G183000 Gossypium raimondii HOM05D004873 ORTHO05D006122 7.3e-155 552.4 1024 50.6
Gohir.D02G163000 Gossypium hirsutum HOM05D004873 ORTHO05D006122 2.8e-154 550.4 1019 50.5
Phvul.002G071900 Phaseolus vulgaris HOM05D004873 ORTHO05D006122 3.6e-154 550.1 814 58.7
DCAR_026543 Daucus carota HOM05D004873 ORTHO05D006122 6.8e-153 545.8 1032 47.7
PGSC0003DMG400030977 Solanum tuberosum HOM05D004873 ORTHO05D006122 2.0e-152 544.3 1017 50.2
Oeu055452.2 Olea europaea HOM05D004873 ORTHO05D006122 1.3e-151 541.6 1079 44.0
Lalb_Chr05g0228131 Lupinus albus HOM05D004873 ORTHO05D006122 1.7e-151 541.2 776 61.5
Actinidia01706 Actinidia chinensis HOM05D004873 ORTHO05D006122 3.7e-151 540.0 1015 49.3
Sopen05g001620 Solanum pennellii HOM05D004873 ORTHO05D006122 1.9e-150 537.7 1020 50.6
Glyma.02G034300 Glycine max HOM05D004873 ORTHO05D006122 3.2e-150 537.0 774 60.1
Gohir.A03G140300 Gossypium hirsutum HOM05D004873 ORTHO05D006122 3.2e-150 537.0 756 58.2
Hma1.2p1_0867F.1_g230230 Hydrangea macrophylla HOM05D004873 ORTHO05D006122 3.5e-149 533.5 858 53.1
PSO063G1237 Papaver somniferum HOM05D004873 ORTHO05D006122 6.0e-149 532.7 1033 52.0
Rhsim12G0047400 Rhododendron simsii HOM05D004873 ORTHO05D006122 1.7e-148 531.2 997 50.8
DCAR_024143 Daucus carota HOM05D004873 ORTHO05D006122 1.2e-146 525.0 1007 47.4
Sc11g0001220 Simmondsia chinensis HOM05D004873 ORTHO05D006122 2.1e-146 524.2 786 56.9
Cpa.g.sc69.19 Carica papaya HOM05D004873 ORTHO05D006122 1.4e-145 521.5 939 47.9
SGA_v2.0_scaffold165G38251 Striga asiatica HOM05D004873 ORTHO05D006122 5.2e-145 519.6 1053 45.9
HPP92_019184 Vanilla planifolia HOM05D004873 ORTHO05D006122 2.6e-144 517.3 1015 49.0
vmacro01183 Vaccinium macrocarpon HOM05D004873 ORTHO05D006122 4.4e-144 516.5 1044 48.6
Peaxi162Scf00338g00218 Petunia axillaris HOM05D004873 ORTHO05D006122 1.7e-143 514.6 991 47.9
PSO832G2005 Papaver somniferum HOM05D004873 ORTHO05D006122 2.4e-142 510.8 1047 50.2
AL2G16455 Arabidopsis lyrata HOM05D004873 ORTHO05D006122 3.2e-142 510.4 1004 50.4
Nitab4.5_0000113g0270 Nicotiana tabacum HOM05D004873 ORTHO05D006122 9.2e-142 508.8 1019 44.2
THA.LOC104819514 Tarenaya hassleriana HOM05D004873 ORTHO05D006122 8.6e-140 502.3 1018 52.4
Lj2g0008447 Lotus japonicus HOM05D004873 ORTHO05D006122 5.6e-139 499.6 1007 49.8
ECA199G0004 Erigeron canadensis HOM05D004873 ORTHO05D006122 1.8e-137 494.6 1010 49.3
Lsat_1_v5_gn_4_6981 Lactuca sativa HOM05D004873 ORTHO05D006122 6.8e-137 492.7 982 50.3
Thecc.02G248000 Theobroma cacao HOM05D004873 ORTHO05D006122 8.9e-137 492.3 930 50.1
Migut.L01408 Erythranthe guttata HOM05D004873 ORTHO05D006122 1.2e-136 491.9 927 48.8
THA.LOC104819547 Tarenaya hassleriana HOM05D004873 ORTHO05D006122 2.9e-135 487.3 908 53.9
Carub.0002s0504 Capsella rubella HOM05D004873 ORTHO05D006122 3.2e-134 483.8 1021 46.9
MSTRG.7893 Avicennia marina HOM05D004873 ORTHO05D006122 7.1e-134 482.6 779 51.7
AUR62005371 Chenopodium quinoa HOM05D004873 ORTHO05D006122 1.7e-132 478.0 869 46.8
PGR102G2017 Punica granatum HOM05D004873 ORTHO05D006122 6.6e-132 476.1 1019 49.1
C01p36930 Brassica napus HOM05D004873 ORTHO05D006122 2.5e-131 474.2 1006 46.0
BcaC06g31808 Brassica carinata HOM05D004873 ORTHO05D006122 9.0e-129 465.7 1003 47.8
BolC1t03651H Brassica oleracea HOM05D004873 ORTHO05D006122 2.6e-128 464.2 1009 46.4
BraA01t02979Z Brassica rapa HOM05D004873 ORTHO05D006122 1.3e-127 461.8 1010 47.5
A01p29150 Brassica napus HOM05D004873 ORTHO05D006122 1.4e-126 458.4 1010 47.2
Sp2g04470 Schrenkiella parvula HOM05D004873 ORTHO05D006122 2.4e-126 457.6 1014 47.8
ATR0691G293 Amborella trichopoda HOM05D004873 ORTHO05D006122 4.6e-125 453.4 976 47.6
AT1G60200 Arabidopsis thaliana HOM05D004873 ORTHO05D006122 4.6e-125 453.4 776 55.8
CARHR052750 Cardamine hirsuta HOM05D004873 ORTHO05D006122 1.0e-124 452.2 827 50.1
HanXRQChr12g0383471 Helianthus annuus HOM05D004873 ORTHO05D006122 1.7e-124 451.4 1015 48.7
Thhalv10023242m.g Eutrema salsugineum HOM05D004873 ORTHO05D006122 3.9e-124 450.3 1014 46.6
Aa31LG2G10110 Aethionema arabicum HOM05D004873 ORTHO05D006122 6.6e-124 449.5 1027 45.8
BcaC09g49418 Brassica carinata HOM05D004873 ORTHO05D006122 1.3e-122 445.3 999 45.3
Hund05991 Selenicereus undatus HOM05D004873 ORTHO05D006122 1.3e-122 445.3 889 53.2
HPP92_019185 Vanilla planifolia HOM05D004873 ORTHO05D006122 2.8e-122 444.1 1015 45.6
C04p26690 Brassica napus HOM05D004873 ORTHO05D006122 2.4e-121 441.0 997 44.0
BolC4t24137H Brassica oleracea HOM05D004873 ORTHO05D006122 2.4e-121 441.0 997 44.0
Lalb_Chr05g0216921 Lupinus albus HOM05D004873 ORTHO05D006122 4.5e-120 436.8 734 45.8
AUR62014033 Chenopodium quinoa HOM05D004873 ORTHO05D006122 4.2e-118 430.3 841 47.9
BcaC02g10690 Brassica carinata HOM05D004873 ORTHO05D006122 2.1e-117 427.9 995 44.0
BcaB04g20256 Brassica carinata HOM05D004873 ORTHO05D006122 6.7e-116 422.9 889 48.6
unitig_27.g25195 Utricularia gibba HOM05D004873 ORTHO05D006122 1.1e-115 422.2 952 43.9
TAR629G1177 Trochodendron aralioides HOM05D004873 ORTHO05D006122 1.5e-112 411.8 912 41.6
EL10Ac6g13668 Beta vulgaris HOM05D004873 ORTHO05D006122 5.8e-112 409.8 1007 48.0
Zm00001eb042420 Zea mays HOM05D004873 ORTHO05D006122 2.6e-104 384.4 831 49.2
SEGI_30430 Sequoiadendron giganteum HOM05D004873 ORTHO05D006122 1.5e-99 368.6 1056 41.1
Pp3c25_3310 Physcomitrium patens HOM05D004873 ORTHO05D006122 7.9e-93 346.3 949 40.7
Ah.03g132650 Amaranthus hybridus HOM05D004873 ORTHO05D006122 8.8e-92 342.8 1032 42.2
Zm00001eb179020 Zea mays HOM05D004873 ORTHO05D006122 1.5e-91 342.0 746 49.3
Nitab4.5_0010954g0010 Nicotiana tabacum HOM05D004873 ORTHO05D006122 4.8e-90 337.0 283 67.5
Mapoly0148s0032 Marchantia polymorpha HOM05D004873 ORTHO05D006122 2.6e-88 331.3 788 46.7
Oeu056734.1 Olea europaea HOM05D004873 ORTHO05D006122 1.0e-87 329.3 862 42.0
C05p51270 Brassica napus HOM05D004873 ORTHO05D006122 5.0e-87 327.0 583 52.5
Solyc05g005620.4 Solanum lycopersicum HOM05D004873 ORTHO05D006122 3.0e-84 317.8 283 66.1
Pp3c16_19090 Physcomitrium patens HOM05D004873 ORTHO05D006122 8.0e-77 293.1 861 38.6
Actinidia08168 Actinidia chinensis HOM05D004873 ORTHO05D006122 6.5e-71 273.5 787 42.7
CDE01G0488 Ceratophyllum demersum HOM05D004873 ORTHO05D006122 7.2e-62 243.4 232 60.3
FvH4_4g34570 Fragaria vesca HOM05D004873 ORTHO05D006122 4.0e-52 211.1 335 46.6
FAN12G0889 Fragaria x ananassa HOM05D004873 ORTHO05D006122 1.4e-49 202.6 288 47.9
SMO117G0118 Selaginella moellendorffii HOM05D004873 ORTHO05D006122 1.4e-49 202.6 887 34.7
CDE02G2297 Ceratophyllum demersum HOM05D001801 ORTHO05D001739 1.1e-46 193.0 158 68.4
PSO675G2898 Papaver somniferum HOM05D004873 ORTHO05D006122 6.2e-45 187.2 468 36.5
CBR_g45271 Chara braunii HOM05D000019 ORTHO05D000002 7.5e-43 180.3 276 44.6
CDE02G2726 Ceratophyllum demersum HOM05D004873 ORTHO05D006122 9.8e-43 179.9 280 48.9
CDE01G0278 Ceratophyllum demersum HOM05D004873 ORTHO05D006122 1.8e-36 159.1 542 32.1
Os08g0416400 Oryza sativa ssp. japonica HOM05D004873 ORTHO05D006122 2.2e-34 152.1 513 33.3
SHI27198 Sapria himalayana HOM05D004873 ORTHO05D006122 1.9e-33 149.1 140 65.7
Aqoxy1G03520 Aquilegia oxysepala HOM05D004873 ORTHO05D006122 4.4e-27 127.9 71 90.1
Medtr5g034435 Medicago truncatula HOM05D004873 ORTHO05D006122 4.6e-24 117.9 72 84.7
MCO16G428 Micromonas commoda HOM05D004873 ORTHO05D006122 2.9e-18 98.6 96 46.9
Cre08.g375084 Chlamydomonas reinhardtii HOM05D004873 ORTHO05D006122 2.4e-17 95.5 72 59.7
MD16G1091800 Malus domestica HOM05D057391 ORTHO05D036519 1.6e-16 92.8 191 43.5
PSO339G1217 Papaver somniferum HOM05D004873 ORTHO05D006122 3.1e-12 78.6 107 39.3
arahy.Tifrunner.gnm1.ann1.Q2B5NH Arachis hypogaea HOM05D000069 ORTHO05D007590 5.3e-12 77.8 108 48.1
SMO119G0006 Selaginella moellendorffii HOM05D004873 ORTHO05D006122 5.3e-12 77.8 137 40.1
MD13G1091400 Malus domestica HOM05D057391 ORTHO05D036519 9.0e-12 77.0 194 39.2
PSO017G6017 Papaver somniferum HOM05D004873 ORTHO05D006122 1.5e-11 76.3 146 34.9
PRCOL_00005912 Prasinoderma coloniale HOM05D004873 ORTHO05D006122 2.2e-10 72.4 72 43.1
FAN22G0459 Fragaria x ananassa HOM05D004873 ORTHO05D006122 5.6e-06 57.8 73 46.6


User provided reference genes

Program Settings