Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C011911.2 Cucumis melo HOM05D004549 ORTHO05D005390 2.5e-90 335.5 180 100.0
CsaV3_5G030690 Cucumis sativus L. HOM05D004549 ORTHO05D005354 3.3e-82 308.5 180 94.4
Sed0000703 Sechium edule HOM05D004549 ORTHO05D005390 1.5e-74 283.1 179 89.4
Potri.010G052000 Populus trichocarpa HOM05D004549 ORTHO05D005390 7.4e-58 227.6 198 69.2
Ciclev10032789m.g Citrus clementina HOM05D004549 ORTHO05D005390 1.7e-57 226.5 201 66.2
Duzib251G0883 Durio zibethinus HOM05D004549 ORTHO05D005390 2.8e-57 225.7 203 66.5
QL03p055962 Quercus lobata HOM05D004549 ORTHO05D005390 1.4e-56 223.4 203 67.0
COL.COLO4_23543 Corchorus olitorius HOM05D004549 ORTHO05D005390 5.3e-56 221.5 203 66.5
Gohir.D01G153400 Gossypium hirsutum HOM05D004549 ORTHO05D005390 9.1e-56 220.7 203 66.0
Gorai.002G190000 Gossypium raimondii HOM05D004549 ORTHO05D005390 9.1e-56 220.7 203 66.0
MBI11_g33737_MAGBIO Magnolia biondii HOM05D004549 ORTHO05D005390 9.1e-56 220.7 204 64.7
TAR374G0110 Trochodendron aralioides HOM05D004549 ORTHO05D005390 9.1e-56 220.7 202 67.3
TWI18G0700 Tripterygium wilfordii HOM05D004549 ORTHO05D005390 1.5e-55 219.9 205 67.3
Gohir.A01G156900 Gossypium hirsutum HOM05D004549 ORTHO05D005390 2.0e-55 219.5 203 65.5
Nn4g22506 Nelumbo nucifera HOM05D004549 ORTHO05D005390 2.6e-55 219.2 203 65.5
TAR622G0384 Trochodendron aralioides HOM05D004549 ORTHO05D005390 5.9e-55 218.0 201 66.7
Haze_12303 Corylus avellana HOM05D004549 ORTHO05D005390 1.0e-54 217.2 197 66.5
Cfa009269 Carpinus fangiana HOM05D004549 ORTHO05D005390 1.3e-54 216.9 201 65.2
Potri.008G181900 Populus trichocarpa HOM05D004549 ORTHO05D005390 1.3e-54 216.9 191 68.6
Manes.13G019200 Manihot esculenta HOM05D004549 ORTHO05D005390 1.7e-54 216.5 195 67.7
ClCG08G017510 Citrullus lanatus HOM05D004549 ORTHO05D005390 2.2e-54 216.1 205 65.4
Manes.12G018800 Manihot esculenta HOM05D004549 ORTHO05D005390 2.2e-54 216.1 199 67.3
Cpa.g.sc122.10 Carica papaya HOM05D004549 ORTHO05D005390 6.5e-54 214.5 199 65.3
Sabra08G0138600 Salix brachista HOM05D004549 ORTHO05D005390 6.5e-54 214.5 194 66.0
Prupe.1G239600 Prunus persica HOM05D004549 ORTHO05D005390 8.5e-54 214.2 200 66.5
arahy.Tifrunner.gnm1.ann1.J2LHWB Arachis hypogaea HOM05D004549 ORTHO05D005390 1.4e-53 213.4 203 64.0
Sopen10g028800 Solanum pennellii HOM05D004549 ORTHO05D005390 1.4e-53 213.4 200 66.5
Dinv11022 Davidia involucrata HOM05D004549 ORTHO05D005390 1.9e-53 213.0 194 66.5
Glyma.05G172300 Glycine max HOM05D004549 ORTHO05D005390 1.9e-53 213.0 191 66.5
Sed0013558 Sechium edule HOM05D004549 ORTHO05D005390 1.9e-53 213.0 213 60.6
HanXRQChr17g0540101 Helianthus annuus HOM05D004549 ORTHO05D005390 2.5e-53 212.6 197 65.5
Hma1.2p1_0079F.1_g041330 Hydrangea macrophylla HOM05D004549 ORTHO05D005390 2.5e-53 212.6 199 64.8
Thecc.02G268400 Theobroma cacao HOM05D004549 ORTHO05D005390 2.5e-53 212.6 203 63.5
ECA246G5237 Erigeron canadensis HOM05D004549 ORTHO05D005390 3.2e-53 212.2 185 67.0
Migut.E00226 Erythranthe guttata HOM05D004549 ORTHO05D005390 3.2e-53 212.2 189 66.7
FAN07G0129 Fragaria x ananassa HOM05D004549 ORTHO05D005390 3.2e-53 212.2 193 67.4
Duzib268G0224 Durio zibethinus HOM05D004549 ORTHO05D005390 4.2e-53 211.8 203 64.5
MD16G1106800 Malus domestica HOM05D004549 ORTHO05D005390 4.2e-53 211.8 193 65.8
FvH4_4g25080 Fragaria vesca HOM05D004549 ORTHO05D005390 5.5e-53 211.5 193 66.8
FAN12G3122 Fragaria x ananassa HOM05D004549 ORTHO05D005390 5.5e-53 211.5 193 66.8
TWI36G1485 Tripterygium wilfordii HOM05D004549 ORTHO05D005390 5.5e-53 211.5 204 64.7
FAN22G0462 Fragaria x ananassa HOM05D004549 ORTHO05D005390 7.2e-53 211.1 192 66.7
FAN22G0861 Fragaria x ananassa HOM05D004549 ORTHO05D005390 7.2e-53 211.1 192 66.7
CAN.G959.23 Capsicum annuum HOM05D004549 ORTHO05D005390 9.4e-53 210.7 204 64.2
FAN17G2166 Fragaria x ananassa HOM05D004549 ORTHO05D005390 9.4e-53 210.7 192 66.7
CsaV3_2G025120 Cucumis sativus L. HOM05D004549 ORTHO05D005390 1.2e-52 210.3 204 65.2
Psat7g059720 Pisum sativum HOM05D004549 ORTHO05D005390 1.6e-52 209.9 202 61.9
Oeu004470.1 Olea europaea HOM05D004549 ORTHO05D005390 2.7e-52 209.1 197 62.9
CSS0012497 Camellia sinensis var. sinensis HOM05D004549 ORTHO05D005390 3.6e-52 208.8 199 64.3
Nitab4.5_0008037g0010 Nicotiana tabacum HOM05D004549 ORTHO05D005390 4.7e-52 208.4 200 65.0
Glyma.11G245400 Glycine max HOM05D004549 ORTHO05D005390 6.1e-52 208.0 199 64.8
MD13G1106700 Malus domestica HOM05D004549 ORTHO05D005390 7.9e-52 207.6 197 65.0
AUR62005536 Chenopodium quinoa HOM05D004549 ORTHO05D005390 1.0e-51 207.2 190 66.3
MELO3C010708.2 Cucumis melo HOM05D004549 ORTHO05D005390 1.0e-51 207.2 204 63.7
Eucgr.B03236 Eucalyptus grandis HOM05D004549 ORTHO05D005390 1.0e-51 207.2 200 63.5
Lj6g0014292 Lotus japonicus HOM05D004549 ORTHO05D005390 1.0e-51 207.2 205 64.9
Oeu009692.1 Olea europaea HOM05D004549 ORTHO05D005390 1.0e-51 207.2 199 62.8
PGSC0003DMG400007201 Solanum tuberosum HOM05D004549 ORTHO05D005390 1.0e-51 207.2 202 63.9
Peaxi162Scf00128g00628 Petunia axillaris HOM05D004549 ORTHO05D005390 1.8e-51 206.5 203 63.5
VMungo0251G3559 Vigna mungo HOM05D004549 ORTHO05D005390 1.8e-51 206.5 193 63.2
Cc11_g16230 Coffea canephora HOM05D004549 ORTHO05D005390 3.0e-51 205.7 201 62.7
RcHm_v2.0_Chr4g0432261 Rosa chinensis HOM05D004549 ORTHO05D005390 3.9e-51 205.3 197 66.0
SGA_v2.0_scaffold391G50640 Striga asiatica HOM05D002973 ORTHO05D003383 3.9e-51 205.3 192 63.0
Lsat_1_v5_gn_3_29100 Lactuca sativa HOM05D004549 ORTHO05D005390 5.2e-51 204.9 189 65.6
SalBow8G0177 Salvia bowleyana HOM05D004549 ORTHO05D005390 8.8e-51 204.1 186 65.1
AUR62024202 Chenopodium quinoa HOM05D004549 ORTHO05D005390 1.5e-50 203.4 191 65.4
Phvul.002G253700 Phaseolus vulgaris HOM05D004549 ORTHO05D005390 1.5e-50 203.4 192 60.9
CiPaw.11G070800 Carya illinoinensis HOM05D004549 ORTHO05D005390 2.6e-50 202.6 206 60.7
Medtr8g089610 Medicago truncatula HOM05D004549 ORTHO05D005390 3.3e-50 202.2 201 62.7
Oeu059785.1 Olea europaea HOM05D004549 ORTHO05D005390 4.4e-50 201.8 194 61.3
PGR102G3304 Punica granatum HOM05D004549 ORTHO05D005390 7.4e-50 201.1 202 60.4
Peaxi162Scf00797g00002 Petunia axillaris HOM05D004549 ORTHO05D005390 9.7e-50 200.7 202 62.9
Actinidia08109 Actinidia chinensis HOM05D004549 ORTHO05D005390 1.3e-49 200.3 201 64.2
Ah.03g133600 Amaranthus hybridus HOM05D004549 ORTHO05D005390 1.3e-49 200.3 205 60.5
Aqoxy3G01353 Aquilegia oxysepala HOM05D004549 ORTHO05D005390 1.7e-49 199.9 195 62.6
Lj6g0007818 Lotus japonicus HOM05D004549 ORTHO05D005390 1.7e-49 199.9 206 64.1
VMungo1383G1841 Vigna mungo HOM05D004549 ORTHO05D005390 2.2e-49 199.5 202 62.4
Ah.02g130410 Amaranthus hybridus HOM05D004549 ORTHO05D005390 6.3e-49 198.0 196 61.7
Rhsim12G0037700 Rhododendron simsii HOM05D004549 ORTHO05D005390 6.3e-49 198.0 199 61.8
Sc11g0000800 Simmondsia chinensis HOM05D004549 ORTHO05D005390 1.4e-48 196.8 192 58.9
Atru.chr11.2199 Acer truncatum HOM05D004549 ORTHO05D005390 1.8e-48 196.4 205 62.9
TPR.G6278 Trifolium pratense HOM05D004549 ORTHO05D005390 2.4e-48 196.1 205 58.5
Lalb_Chr23g0277771 Lupinus albus HOM05D004549 ORTHO05D005390 5.3e-48 194.9 211 59.2
Lalb_Chr11g0075581 Lupinus albus HOM05D004549 ORTHO05D005390 7.0e-48 194.5 208 61.5
MSTRG.13333 Avicennia marina HOM05D004549 ORTHO05D005390 9.1e-48 194.1 196 58.7
Aqoxy5G03620 Aquilegia oxysepala HOM05D004549 ORTHO05D005390 1.6e-47 193.4 204 57.4
EL10As2g23198 Beta vulgaris HOM05D004549 ORTHO05D005390 1.6e-47 193.4 201 61.7
Phvul.001G257100 Phaseolus vulgaris HOM05D004549 ORTHO05D005390 2.6e-47 192.6 193 63.2
TWI75G1071 Tripterygium wilfordii HOM05D004549 ORTHO05D005390 2.2e-46 189.5 196 58.7
ATR0824G259 Amborella trichopoda HOM05D004549 ORTHO05D005390 3.8e-46 188.7 188 61.2
Ca_17796_v3 Cicer arietinum L. HOM05D004549 ORTHO05D005390 3.8e-46 188.7 195 57.4
Lalb_Chr07g0185571 Lupinus albus HOM05D004549 ORTHO05D005390 3.8e-46 188.7 202 60.4
THA.LOC104807755 Tarenaya hassleriana HOM05D004549 ORTHO05D005390 3.8e-46 188.7 194 62.4
unitig_62.g23660 Utricularia gibba HOM05D004549 ORTHO05D005390 3.8e-46 188.7 194 60.8
SGA_v2.0_scaffold87G27112 Striga asiatica HOM05D004549 ORTHO05D005390 2.5e-45 186.0 199 62.3
PSO017G6717 Papaver somniferum HOM05D004549 ORTHO05D005390 5.5e-45 184.9 204 56.4
PSO478G3953 Papaver somniferum HOM05D004549 ORTHO05D005390 7.2e-45 184.5 204 56.4
Glyma.18G011800 Glycine max HOM05D004549 ORTHO05D005390 1.2e-44 183.7 198 59.6
CDE06G0408 Ceratophyllum demersum HOM05D004549 ORTHO05D005390 1.6e-44 183.3 196 59.7
CANSAT01G2573 Cannabis sativa HOM05D004549 ORTHO05D005390 2.1e-44 183.0 210 57.6
Psat5g094200 Pisum sativum HOM05D004549 ORTHO05D005390 2.1e-44 183.0 138 72.5
C06p38460 Brassica napus HOM05D004549 ORTHO05D005390 4.7e-44 181.8 206 56.3
BolC6t38943H Brassica oleracea HOM05D004549 ORTHO05D005390 4.7e-44 181.8 206 56.3
CDE08G0789 Ceratophyllum demersum HOM05D004549 ORTHO05D005390 4.7e-44 181.8 190 61.6
A07p32430 Brassica napus HOM05D004549 ORTHO05D005390 8.0e-44 181.0 208 56.2
BolC6t39200H Brassica oleracea HOM05D004549 ORTHO05D005390 8.0e-44 181.0 200 58.5
BraA07t30866Z Brassica rapa HOM05D004549 ORTHO05D005390 8.0e-44 181.0 208 56.2
BcaC03g14868 Brassica carinata HOM05D004549 ORTHO05D005390 1.8e-43 179.9 203 59.6
C02p23390 Brassica napus HOM05D004549 ORTHO05D005390 1.8e-43 179.9 203 59.6
BolC2t08472H Brassica oleracea HOM05D004549 ORTHO05D005390 1.8e-43 179.9 203 59.6
CARHR060320 Cardamine hirsuta HOM05D004549 ORTHO05D005390 1.8e-43 179.9 179 62.6
Sp5g22750 Schrenkiella parvula HOM05D004549 ORTHO05D005390 1.8e-43 179.9 202 60.9
A02p14440 Brassica napus HOM05D004549 ORTHO05D005390 2.3e-43 179.5 203 59.6
Thhalv10019165m.g Eutrema salsugineum HOM05D004549 ORTHO05D005390 2.3e-43 179.5 208 55.3
BraA02t06507Z Brassica rapa HOM05D004549 ORTHO05D005390 3.0e-43 179.1 207 58.0
Ca_25121_v3 Cicer arietinum L. HOM05D004549 ORTHO05D005390 4.0e-43 178.7 201 56.2
A07p34290 Brassica napus HOM05D004549 ORTHO05D005390 6.7e-43 177.9 202 57.9
Aa31LG4G12260 Aethionema arabicum HOM05D004549 ORTHO05D005390 8.8e-43 177.6 193 59.1
BcaB03g15371 Brassica carinata HOM05D004549 ORTHO05D005390 2.0e-42 176.4 210 56.2
C06p42290 Brassica napus HOM05D004549 ORTHO05D005390 4.4e-42 175.3 202 56.9
BraA07t31058Z Brassica rapa HOM05D004549 ORTHO05D005390 4.4e-42 175.3 202 56.9
BcaC08g46197 Brassica carinata HOM05D004549 ORTHO05D005390 1.3e-41 173.7 203 57.6
Medtr3g086230 Medicago truncatula HOM05D004549 ORTHO05D005390 2.8e-41 172.6 203 57.6
unitig_744.g24296 Utricularia gibba HOM05D004549 ORTHO05D005390 3.7e-41 172.2 188 56.9
BcaB05g24311 Brassica carinata HOM05D004549 ORTHO05D005390 8.2e-41 171.0 209 57.9
BcaB03g15168 Brassica carinata HOM05D004549 ORTHO05D005390 1.8e-40 169.9 207 53.1
Duzib248G1249 Durio zibethinus HOM05D004549 ORTHO05D005390 7.0e-40 167.9 169 62.1
BcaC08g46043 Brassica carinata HOM05D004549 ORTHO05D005390 9.1e-40 167.5 196 55.6
HPP92_017052 Vanilla planifolia HOM05D004549 ORTHO05D005390 5.9e-39 164.9 143 62.9
CSS0014809 Camellia sinensis var. sinensis HOM05D004549 ORTHO05D005390 2.9e-38 162.5 155 60.6
Mapoly0083s0047 Marchantia polymorpha HOM05D004549 ORTHO05D005390 1.6e-36 156.8 138 59.4
SEGI_41357 Sequoiadendron giganteum HOM05D004549 ORTHO05D005390 6.8e-35 151.4 159 56.6
Carub.0002s1417 Capsella rubella HOM05D004549 ORTHO05D005390 1.7e-33 146.7 192 52.1
Os08g0119800 Oryza sativa ssp. japonica HOM05D004549 ORTHO05D005390 8.3e-33 144.4 115 67.0
AL2G26440 Arabidopsis lyrata HOM05D004549 ORTHO05D005390 1.1e-32 144.1 192 51.6
Ciclev10022422m.g Citrus clementina HOM05D004549 ORTHO05D005390 1.4e-32 143.7 179 50.8
AT1G67740 Arabidopsis thaliana HOM05D004549 ORTHO05D005390 3.1e-32 142.5 191 50.3
AagrBONN_evm.TU.Sc2ySwM_117.3039 Anthoceros agrestis HOM05D004985 ORTHO05D005912 1.6e-31 140.2 137 56.9
Pp3c24_20010 Physcomitrium patens HOM05D004549 ORTHO05D005390 4.5e-31 138.7 140 48.6
Pp3c8_24120 Physcomitrium patens HOM05D004549 ORTHO05D005390 1.3e-30 137.1 158 43.7
Pp3c23_21280 Physcomitrium patens HOM05D004549 ORTHO05D005390 5.0e-30 135.2 161 46.0
TPR.G35846 Trifolium pratense HOM05D004549 ORTHO05D005390 4.4e-26 122.1 173 52.6
CBR_g38912 Chara braunii HOM05D004549 ORTHO05D005390 1.7e-25 120.2 158 44.3
CDE09G1301 Ceratophyllum demersum HOM05D004549 ORTHO05D005390 4.9e-25 118.6 197 43.7
SMO137G0014 Selaginella moellendorffii HOM05D004549 ORTHO05D005390 1.8e-24 116.7 141 48.9
Nn3g16614 Nelumbo nucifera HOM05D004549 ORTHO05D005390 3.5e-23 112.5 118 63.6
Zm00001eb261260 Zea mays HOM05D004549 ORTHO05D005390 2.8e-20 102.8 196 41.8
Prupe.5G159900 Prunus persica HOM05D004549 ORTHO05D005390 8.0e-20 101.3 128 53.9
Zm00001eb173510 Zea mays HOM05D004549 ORTHO05D005390 1.8e-19 100.1 140 45.0
AUR62001261 Chenopodium quinoa HOM05D004549 ORTHO05D005390 3.0e-19 99.4 136 49.3
unitig_52.g17185 Utricularia gibba HOM05D004549 ORTHO05D005390 3.0e-19 99.4 75 68.0
Ah.08g218300 Amaranthus hybridus HOM05D004549 ORTHO05D005390 1.2e-18 97.4 181 42.5
RcHm_v2.0_Chr7g0191491 Rosa chinensis HOM05D004549 ORTHO05D005390 2.6e-18 96.3 133 49.6
Sc04g0001060 Simmondsia chinensis HOM05D004549 ORTHO05D005390 1.7e-17 93.6 102 53.9
Medtr2g046810 Medicago truncatula HOM05D004549 ORTHO05D005390 4.9e-17 92.0 150 48.0
FAN08G1783 Fragaria x ananassa HOM05D004549 ORTHO05D005390 1.8e-16 90.1 60 75.0
FAN18G0098 Fragaria x ananassa HOM05D004549 ORTHO05D005390 3.2e-16 89.4 133 47.4
PRCOL_00004421 Prasinoderma coloniale HOM05D004549 ORTHO05D005390 5.4e-16 88.6 116 44.0
Solyc10g077120.3 Solanum lycopersicum HOM05D004549 ORTHO05D005390 5.8e-10 68.6 86 61.6
MCO16G101 Micromonas commoda HOM05D004549 ORTHO05D005390 4.9e-09 65.5 118 37.3
Cre10.g452100 Chlamydomonas reinhardtii HOM05D004549 ORTHO05D005390 2.0e-07 60.1 146 32.9


User provided reference genes

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