Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C011898.2 Cucumis melo HOM05D003777 ORTHO05D004690 0.0e+00 1119.8 637 100.0
CsaV3_5G030580 Cucumis sativus L. HOM05D003777 ORTHO05D004690 0.0e+00 1100.1 637 97.8
ClCG05G026250 Citrullus lanatus HOM05D003777 ORTHO05D004690 1.2e-307 1059.3 637 95.0
Sed0005823 Sechium edule HOM05D003777 ORTHO05D004690 1.8e-290 1002.3 634 86.3
QL03p055332 Quercus lobata HOM05D003777 ORTHO05D004690 5.1e-253 877.9 635 75.7
CiPaw.05G173500 Carya illinoinensis HOM05D003777 ORTHO05D004690 9.6e-252 873.6 640 74.7
Cfa009302 Carpinus fangiana HOM05D003777 ORTHO05D004690 1.8e-250 869.4 633 78.4
CANSAT01G1767 Cannabis sativa HOM05D003777 ORTHO05D004690 9.6e-244 847.0 634 72.4
Sed0021346 Sechium edule HOM05D003777 ORTHO05D004690 4.0e-242 841.6 521 94.0
Cpa.g.sc86.2 Carica papaya HOM05D003777 ORTHO05D004690 4.5e-241 838.2 618 77.3
Manes.13G014300 Manihot esculenta HOM05D003777 ORTHO05D004690 1.7e-240 836.3 634 76.3
arahy.Tifrunner.gnm1.ann1.9WV3XJ Arachis hypogaea HOM05D003777 ORTHO05D004690 2.9e-240 835.5 631 74.3
GSVIVG01010320001 Vitis vinifera HOM05D003777 ORTHO05D004690 2.9e-240 835.5 641 74.7
Duzib248G0478 Durio zibethinus HOM05D003777 ORTHO05D004690 1.9e-239 832.8 640 75.3
Psat7g080080 Pisum sativum HOM05D003777 ORTHO05D004690 9.3e-239 830.5 640 71.1
Potri.006G216400 Populus trichocarpa HOM05D003777 ORTHO05D004690 1.6e-238 829.7 638 72.1
Phvul.002G176900 Phaseolus vulgaris HOM05D003777 ORTHO05D004690 1.0e-237 827.0 640 70.9
Duzib268G0959 Durio zibethinus HOM05D003777 ORTHO05D004690 1.8e-237 826.2 640 73.3
TWI75G0300 Tripterygium wilfordii HOM05D003777 ORTHO05D004690 1.8e-237 826.2 634 72.7
TWI36G1566 Tripterygium wilfordii HOM05D003777 ORTHO05D004690 3.9e-237 825.1 635 71.5
arahy.Tifrunner.gnm1.ann1.238UV6 Arachis hypogaea HOM05D003777 ORTHO05D004690 9.6e-236 820.5 636 73.0
TAR374G1267 Trochodendron aralioides HOM05D003777 ORTHO05D004690 1.6e-235 819.7 642 69.5
Manes.12G016400 Manihot esculenta HOM05D003777 ORTHO05D004690 8.1e-235 817.4 635 71.2
Thecc.02G272700 Theobroma cacao HOM05D003777 ORTHO05D004690 8.1e-235 817.4 640 70.2
Gohir.D05G312600 Gossypium hirsutum HOM05D003777 ORTHO05D004690 1.4e-234 816.6 637 73.5
TAR374G0928 Trochodendron aralioides HOM05D003777 ORTHO05D004690 1.4e-234 816.6 642 69.3
Gorai.009G334100 Gossypium raimondii HOM05D003777 ORTHO05D004690 4.0e-234 815.1 635 73.9
Glyma.08G101100 Glycine max HOM05D003777 ORTHO05D004690 9.0e-234 813.9 639 72.5
Glyma.05G144700 Glycine max HOM05D003777 ORTHO05D004690 1.5e-233 813.1 635 69.6
TPR.G17105 Trifolium pratense HOM05D003777 ORTHO05D004690 2.6e-233 812.4 635 72.9
Sabra06G0166800 Salix brachista HOM05D003777 ORTHO05D004690 7.6e-233 810.8 635 70.9
Ca_18071_v3 Cicer arietinum L. HOM05D003777 ORTHO05D004690 1.3e-232 810.1 640 70.3
MD13G1110100 Malus domestica HOM05D003777 ORTHO05D004690 2.9e-232 808.9 640 71.4
Gohir.A05G311500 Gossypium hirsutum HOM05D003777 ORTHO05D004690 4.9e-232 808.1 637 72.8
Actinidia08096 Actinidia chinensis HOM05D003777 ORTHO05D004690 6.4e-232 807.7 620 74.2
MD16G1110000 Malus domestica HOM05D003777 ORTHO05D004690 1.1e-231 807.0 640 71.1
CSS0004768 Camellia sinensis var. sinensis HOM05D003777 ORTHO05D004690 2.4e-231 805.8 616 71.8
Atru.chr11.2223 Acer truncatum HOM05D003777 ORTHO05D004690 9.3e-231 803.9 627 73.2
Medtr8g079990 Medicago truncatula HOM05D003777 ORTHO05D004690 1.2e-230 803.5 640 69.7
Dinv18168 Davidia involucrata HOM05D003777 ORTHO05D004690 2.1e-230 802.7 653 69.2
Aa31LG4G12090 Aethionema arabicum HOM05D003777 ORTHO05D004690 7.9e-230 800.8 623 70.0
PGR102G0273 Punica granatum HOM05D003777 ORTHO05D004690 1.0e-229 800.4 639 71.5
Solyc11g062270.2 Solanum lycopersicum HOM05D003777 ORTHO05D004690 3.9e-229 798.5 642 69.3
Dinv11003 Davidia involucrata HOM05D003777 ORTHO05D004690 5.1e-229 798.1 643 72.6
Lj4g0007172 Lotus japonicus HOM05D003777 ORTHO05D004690 6.7e-229 797.7 639 68.4
Nitab4.5_0002026g0090 Nicotiana tabacum HOM05D003777 ORTHO05D004690 2.5e-228 795.8 626 70.0
arahy.Tifrunner.gnm1.ann1.SED4J7 Arachis hypogaea HOM05D003777 ORTHO05D004690 3.3e-228 795.4 675 65.9
vmacro01091 Vaccinium macrocarpon HOM05D003777 ORTHO05D004690 7.4e-228 794.3 646 70.0
Nitab4.5_0000492g0120 Nicotiana tabacum HOM05D003777 ORTHO05D004690 9.6e-228 793.9 626 69.5
A07p34190 Brassica napus HOM05D003777 ORTHO05D004690 1.3e-227 793.5 640 70.3
Eucgr.B03455 Eucalyptus grandis HOM05D003777 ORTHO05D004690 2.8e-227 792.3 639 71.7
VMungo0251G0828 Vigna mungo HOM05D003777 ORTHO05D004690 3.7e-227 792.0 680 68.2
arahy.Tifrunner.gnm1.ann1.35MH8V Arachis hypogaea HOM05D003777 ORTHO05D004690 1.1e-226 790.4 655 67.3
Hma1.2p1_0079F.1_g041650 Hydrangea macrophylla HOM05D003777 ORTHO05D004690 1.1e-226 790.4 643 72.0
SGA_v2.0_scaffold247G44863 Striga asiatica HOM05D003777 ORTHO05D004690 2.4e-226 789.3 667 65.5
MSTRG.12471 Avicennia marina HOM05D003777 ORTHO05D004690 3.1e-226 788.9 625 69.3
Sopen11g024250 Solanum pennellii HOM05D003777 ORTHO05D004690 5.3e-226 788.1 642 68.7
THA.LOC104825526 Tarenaya hassleriana HOM05D003777 ORTHO05D004690 9.0e-226 787.3 637 68.0
Lalb_Chr07g0187251 Lupinus albus HOM05D003777 ORTHO05D004690 1.5e-225 786.6 639 71.0
BcaB03g15177 Brassica carinata HOM05D003777 ORTHO05D004690 1.7e-224 783.1 640 66.4
BcaC08g46176 Brassica carinata HOM05D003777 ORTHO05D004690 2.2e-224 782.7 640 66.4
C06p42580 Brassica napus HOM05D003777 ORTHO05D004690 2.2e-224 782.7 640 66.4
BolC6t39181H Brassica oleracea HOM05D003777 ORTHO05D004690 2.2e-224 782.7 640 66.4
Sp5g22670 Schrenkiella parvula HOM05D003777 ORTHO05D004690 1.9e-223 779.6 640 66.4
PSO170G4787 Papaver somniferum HOM05D003777 ORTHO05D004690 1.2e-222 776.9 631 68.1
Oeu015952.1 Olea europaea HOM05D003777 ORTHO05D004690 5.1e-221 771.5 648 66.8
DCAR_021624 Daucus carota HOM05D003777 ORTHO05D004690 8.7e-221 770.8 640 65.3
PSO063G1619 Papaver somniferum HOM05D003777 ORTHO05D004690 1.6e-219 766.5 632 67.7
RcHm_v2.0_Chr4g0431581 Rosa chinensis HOM05D003777 ORTHO05D004690 1.1e-218 763.8 640 69.5
RcHm_v2.0_Chr4g0431561 Rosa chinensis HOM05D003777 ORTHO05D004690 1.4e-218 763.5 640 69.5
Thhalv10018246m.g Eutrema salsugineum HOM05D003777 ORTHO05D004690 1.8e-218 763.1 641 65.2
Lsat_1_v5_gn_2_96961 Lactuca sativa HOM05D003777 ORTHO05D004690 2.4e-218 762.7 652 65.5
AL2G26380 Arabidopsis lyrata HOM05D003777 ORTHO05D004690 6.9e-218 761.1 636 66.4
CAN.G487.1 Capsicum annuum HOM05D003777 ORTHO05D004690 3.4e-217 758.8 622 68.2
FvH4_4g24580 Fragaria vesca HOM05D003777 ORTHO05D004690 5.9e-217 758.1 640 68.3
FAN12G3799 Fragaria x ananassa HOM05D003777 ORTHO05D004690 5.9e-217 758.1 640 68.3
A07p32470 Brassica napus HOM05D003777 ORTHO05D004690 1.0e-216 757.3 640 65.2
Peaxi162Scf00029g02527 Petunia axillaris HOM05D003777 ORTHO05D004690 2.9e-216 755.7 639 67.0
Hund25014 Selenicereus undatus HOM05D003777 ORTHO05D004690 6.5e-216 754.6 640 65.8
AUR62017151 Chenopodium quinoa HOM05D003777 ORTHO05D004690 1.1e-215 753.8 645 67.8
FAN07G0030 Fragaria x ananassa HOM05D003777 ORTHO05D004690 1.1e-215 753.8 640 68.0
Rhsim12G0035800 Rhododendron simsii HOM05D003777 ORTHO05D004690 2.5e-215 752.7 726 62.8
FAN22G1648 Fragaria x ananassa HOM05D003777 ORTHO05D004690 4.6e-214 748.4 640 67.7
CARHR060270 Cardamine hirsuta HOM05D003777 ORTHO05D004690 7.9e-214 747.7 639 64.9
FAN17G2971 Fragaria x ananassa HOM05D003777 ORTHO05D004690 1.8e-213 746.5 620 68.7
ECA233G1683 Erigeron canadensis HOM05D003777 ORTHO05D004690 3.0e-213 745.7 642 65.6
Migut.D00587 Erythranthe guttata HOM05D003777 ORTHO05D004690 8.8e-213 744.2 606 68.8
AT1G67680 Arabidopsis thaliana HOM05D003777 ORTHO05D004690 1.5e-212 743.4 650 63.5
Aqoxy5G03557 Aquilegia oxysepala HOM05D003777 ORTHO05D004690 2.5e-212 742.7 653 63.2
AUR62035656 Chenopodium quinoa HOM05D003777 ORTHO05D004690 7.4e-212 741.1 645 66.5
DCAR_021625 Daucus carota HOM05D003777 ORTHO05D004690 7.4e-212 741.1 640 63.3
Carub.0002s1406 Capsella rubella HOM05D003777 ORTHO05D004690 2.2e-211 739.6 642 64.3
Ciclev10030955m.g Citrus clementina HOM05D003777 ORTHO05D004690 2.2e-211 739.6 637 69.4
Ah.10g034950 Amaranthus hybridus HOM05D003777 ORTHO05D004690 1.4e-207 726.9 638 63.2
TPR.G27143 Trifolium pratense HOM05D003777 ORTHO05D004690 1.4e-207 726.9 553 69.8
EL10Ac9g22111 Beta vulgaris HOM05D003777 ORTHO05D004690 1.9e-207 726.5 639 66.8
CDE07G0923 Ceratophyllum demersum HOM05D003777 ORTHO05D004690 3.6e-206 722.2 643 65.9
HanXRQChr04g0126141 Helianthus annuus HOM05D003777 ORTHO05D004690 4.4e-204 715.3 645 62.9
MBI11_g31858_MAGBIO Magnolia biondii HOM05D003777 ORTHO05D004690 2.2e-203 713.0 641 67.1
Prupe.1G234800 Prunus persica HOM05D003777 ORTHO05D004690 2.8e-203 712.6 542 71.0
Actinidia30683 Actinidia chinensis HOM05D003777 ORTHO05D004690 4.8e-203 711.8 644 63.7
BraA07t31048Z Brassica rapa HOM05D003777 ORTHO05D004690 2.2e-200 703.0 560 69.3
HPP92_012793 Vanilla planifolia HOM05D003777 ORTHO05D004690 1.4e-199 700.3 640 65.6
unitig_744.g24046 Utricularia gibba HOM05D003777 ORTHO05D004690 7.2e-199 698.0 655 61.4
Nitab4.5_0002757g0020 Nicotiana tabacum HOM05D003777 ORTHO05D004690 2.7e-198 696.0 639 63.1
COL.COLO4_23602 Corchorus olitorius HOM05D003777 ORTHO05D004690 2.0e-196 689.9 638 61.1
AT1G67650 Arabidopsis thaliana HOM05D003777 ORTHO05D004690 5.7e-196 688.3 643 58.8
CSS0018349 Camellia sinensis var. sinensis HOM05D003777 ORTHO05D004690 1.5e-191 673.7 511 71.2
Nitab4.5_0001925g0190 Nicotiana tabacum HOM05D003777 ORTHO05D004690 4.0e-181 639.0 627 59.5
Sc04g0009890 Simmondsia chinensis HOM05D003777 ORTHO05D004690 9.8e-180 634.4 512 71.9
BcaB03g15368 Brassica carinata HOM05D003777 ORTHO05D004690 3.7e-179 632.5 644 57.8
Os01g0889000 Oryza sativa ssp. japonica HOM05D003777 ORTHO05D004690 2.3e-176 623.2 634 57.3
ATR0824G106 Amborella trichopoda HOM05D003777 ORTHO05D004690 3.8e-176 622.5 631 57.4
AL2G26340 Arabidopsis lyrata HOM05D003777 ORTHO05D004690 2.7e-169 599.7 648 54.9
Lj2C633G4 Lonicera japonica HOM05D003777 ORTHO05D004690 1.0e-168 597.8 512 68.0
Carub.0002s1402 Capsella rubella HOM05D003777 ORTHO05D004690 2.5e-167 593.2 520 64.2
PGSC0003DMG400032494 Solanum tuberosum HOM05D003777 ORTHO05D004690 1.2e-164 584.3 480 67.3
Lalb_Chr12g0206451 Lupinus albus HOM05D003777 ORTHO05D004690 1.5e-151 540.8 430 73.3
Lalb_Chr12g0206431 Lupinus albus HOM05D003777 ORTHO05D004690 2.0e-148 530.4 423 73.3
BolC2t08468H Brassica oleracea HOM05D003777 ORTHO05D004690 9.9e-148 528.1 624 51.0
SHI17928 Sapria himalayana HOM05D003777 ORTHO05D004690 3.4e-140 503.1 636 49.4
Mapoly0007s0138 Marchantia polymorpha HOM05D003777 ORTHO05D004690 2.2e-139 500.4 638 46.1
CSS0034811 Camellia sinensis var. sinensis HOM05D003777 ORTHO05D004690 5.4e-138 495.7 412 67.2
C06p38540 Brassica napus HOM05D003777 ORTHO05D004690 1.6e-137 494.2 451 60.3
SEGI_14731 Sequoiadendron giganteum HOM05D003777 ORTHO05D004690 3.3e-135 486.5 522 53.1
Zm00001eb145240 Zea mays HOM05D003777 ORTHO05D004690 2.9e-131 473.4 481 57.6
Pp3c19_7700 Physcomitrium patens HOM05D003777 ORTHO05D004690 1.6e-129 467.6 651 43.8
BolC6t38947H Brassica oleracea HOM05D003777 ORTHO05D004690 3.9e-120 436.4 387 61.2
Lalb_Chr12g0206401 Lupinus albus HOM05D003777 ORTHO05D004690 1.9e-119 434.1 344 71.8
SMO356G0370 Selaginella moellendorffii HOM05D003777 ORTHO05D004690 8.7e-112 408.7 592 43.6
CBR_g26341 Chara braunii HOM05D003777 ORTHO05D004690 4.5e-108 396.4 619 43.0
C02p23330 Brassica napus HOM05D003777 ORTHO05D004690 4.1e-101 373.2 419 51.3
TAR622G1358 Trochodendron aralioides HOM05D003777 ORTHO05D004690 3.4e-100 370.2 304 68.8
AUR62017138 Chenopodium quinoa HOM05D003777 ORTHO05D004690 8.2e-86 322.4 332 60.2
MCO13G157 Micromonas commoda HOM05D003777 ORTHO05D004690 2.4e-69 267.7 665 32.6
ECA238G3243 Erigeron canadensis HOM05D003777 ORTHO05D004690 1.6e-68 265.0 222 61.7
CSS0039153 Camellia sinensis var. sinensis HOM05D003777 ORTHO05D004690 2.2e-67 261.2 197 71.1
BraA07t30871Z Brassica rapa HOM05D003777 ORTHO05D004690 6.5e-67 259.6 209 64.1
Oeu007469.1 Olea europaea HOM05D003777 ORTHO05D004690 3.5e-60 237.3 325 48.0
Cre03.g182500 Chlamydomonas reinhardtii HOM05D003777 ORTHO05D004690 3.8e-59 233.8 705 31.9
Nn4g21997 Nelumbo nucifera HOM05D003777 ORTHO05D004690 1.5e-58 231.9 176 72.2
TAR622G0547 Trochodendron aralioides HOM05D003777 ORTHO05D004690 5.5e-58 229.9 168 71.4
Hma1.2p1_0075F.1_g039220 Hydrangea macrophylla HOM05D003777 ORTHO05D004690 4.7e-57 226.9 229 55.9
Psat3g102200 Pisum sativum HOM05D003777 ORTHO05D004690 2.3e-51 208.0 155 70.3
PGSC0003DMG400024126 Solanum tuberosum HOM05D003777 ORTHO05D004690 6.6e-51 206.5 159 71.1
Psat5g044680 Pisum sativum HOM05D003777 ORTHO05D004690 2.5e-50 204.5 155 70.3
PGSC0003DMG400024128 Solanum tuberosum HOM05D003777 ORTHO05D004690 6.1e-49 199.9 188 56.9
Solyc10g044443.1 Solanum lycopersicum HOM05D003777 ORTHO05D004690 1.4e-48 198.7 178 64.6
PGSC0003DMG400017991 Solanum tuberosum HOM05D003777 ORTHO05D004690 1.7e-46 191.8 151 70.9
PRCOL_00006597 Prasinoderma coloniale HOM05D003777 ORTHO05D004690 6.4e-46 189.9 609 30.7
Sopen01g018830 Solanum pennellii HOM05D003777 ORTHO05D004690 8.3e-46 189.5 178 61.8
Aqoxy6G02118 Aquilegia oxysepala HOM05D003777 ORTHO05D004690 3.9e-43 180.6 128 73.4
Haze_17766 Corylus avellana HOM05D001576 ORTHO05D000401 5.6e-42 176.8 131 73.3
Aqoxy6G02120 Aquilegia oxysepala HOM05D003777 ORTHO05D004690 3.5e-36 157.5 136 66.9
CAN.G1295.1 Capsicum annuum HOM05D003777 ORTHO05D004690 2.5e-34 151.4 146 60.3
Psat3g103880 Pisum sativum HOM05D003777 ORTHO05D004690 8.9e-32 142.9 187 47.1
Sopen01g018820 Solanum pennellii HOM05D003777 ORTHO05D004690 8.4e-30 136.3 150 55.3
Lalb_Chr12g0206411 Lupinus albus HOM05D003777 ORTHO05D004690 3.2e-29 134.4 92 76.1
Lalb_Chr12g0206441 Lupinus albus HOM05D003777 ORTHO05D004690 3.2e-29 134.4 92 76.1
Lalb_Chr12g0206461 Lupinus albus HOM05D003777 ORTHO05D004690 3.2e-29 134.4 92 76.1
Lalb_Chr12g0206421 Lupinus albus HOM05D003777 ORTHO05D004690 4.6e-28 130.6 110 64.5
CAN.G1310.4 Capsicum annuum HOM05D003777 ORTHO05D004690 8.6e-27 126.3 92 73.9
Aqoxy6G02119 Aquilegia oxysepala HOM05D003777 ORTHO05D004690 6.8e-24 116.7 100 63.0
MBI11_g11081_MAGBIO Magnolia biondii HOM05D003777 ORTHO05D004690 2.9e-22 111.3 97 60.8
MBI11_g45427_MAGBIO Magnolia biondii HOM05D003777 ORTHO05D004690 1.9e-21 108.6 94 61.7
TAR636G3069 Trochodendron aralioides HOM05D003847 ORTHO05D004976 5.4e-21 107.1 94 61.7
TAR622G0255 Trochodendron aralioides HOM05D003777 ORTHO05D004690 1.3e-19 102.4 91 61.5
C06p38550 Brassica napus HOM05D003777 ORTHO05D004690 1.9e-18 98.6 70 74.3
Psat4g130680 Pisum sativum HOM05D003777 ORTHO05D037365 4.3e-18 97.4 97 52.6
BcaC03g14865 Brassica carinata HOM05D003777 ORTHO05D004690 1.1e-16 92.8 68 69.1
Solyc01g047580.1 Solanum lycopersicum HOM05D003777 ORTHO05D004690 2.0e-15 88.6 120 45.8
BcaC03g14858 Brassica carinata HOM05D003777 ORTHO05D004690 2.9e-14 84.7 69 65.2
SHI17930 Sapria himalayana HOM05D003777 ORTHO05D012379 1.1e-13 82.8 93 51.6
PGSC0003DMG400024133 Solanum tuberosum HOM05D003777 ORTHO05D004690 1.1e-13 82.8 58 72.4
SEGI_18986 Sequoiadendron giganteum HOM05D003777 ORTHO05D000001 4.2e-13 80.9 82 48.8
Nitab4.5_0004629g0100 Nicotiana tabacum HOM05D003777 ORTHO05D004690 1.2e-12 79.3 49 75.5
CAN.G151.20 Capsicum annuum HOM05D000329 ORTHO05D000833 4.0e-08 64.3 48 72.9
TAR625G1055 Trochodendron aralioides HOM05D003777 ORTHO05D012379 7.6e-07 60.1 47 59.6
Nitab4.5_0004750g0060 Nicotiana tabacum HOM05D003777 ORTHO05D012379 2.9e-06 58.2 49 63.3


User provided reference genes

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