Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C011837.2 Cucumis melo HOM05D005383 ORTHO05D006722 2.4e-143 512.7 371 100.0
CsaV3_5G029920 Cucumis sativus L. HOM05D005383 ORTHO05D006722 1.0e-141 507.3 371 98.4
Sed0026787 Sechium edule HOM05D005383 ORTHO05D006722 1.0e-125 454.1 372 87.6
Sed0022153 Sechium edule HOM05D005383 ORTHO05D006722 1.1e-116 424.1 372 86.3
QL02p099934 Quercus lobata HOM05D005383 ORTHO05D006722 5.5e-108 395.2 373 81.5
CiPaw.05G051100 Carya illinoinensis HOM05D005383 ORTHO05D006722 2.0e-105 386.7 375 78.9
Ca_00052_v3 Cicer arietinum L. HOM05D005383 ORTHO05D006722 1.5e-100 370.5 376 75.0
GSVIVG01023286001 Vitis vinifera HOM05D005383 ORTHO05D006722 5.6e-100 368.6 374 76.7
CiPaw.06G143700 Carya illinoinensis HOM05D005383 ORTHO05D006722 1.2e-99 367.5 373 66.2
Haze_01820 Corylus avellana HOM05D005383 ORTHO05D006722 2.8e-99 366.3 402 63.4
Manes.10G120600 Manihot esculenta HOM05D005383 ORTHO05D006722 8.0e-99 364.8 376 80.1
arahy.Tifrunner.gnm1.ann1.UJ0XJV Arachis hypogaea HOM05D005383 ORTHO05D006722 1.0e-98 364.4 373 77.5
Thecc.02G025800 Theobroma cacao HOM05D005383 ORTHO05D006722 3.4e-97 359.4 375 78.1
CANSAT54G1323 Cannabis sativa HOM05D005383 ORTHO05D006722 5.7e-97 358.6 377 75.3
Cpa.g.sc161.1 Carica papaya HOM05D005383 ORTHO05D006722 5.7e-97 358.6 374 77.0
Prupe.1G576100 Prunus persica HOM05D005383 ORTHO05D006722 7.5e-97 358.2 363 67.8
Duzib248G0552 Durio zibethinus HOM05D005383 ORTHO05D006722 1.3e-96 357.5 375 61.9
Gohir.A01G182000 Gossypium hirsutum HOM05D005383 ORTHO05D006722 1.7e-96 357.1 375 75.7
Lalb_Chr07g0185851 Lupinus albus HOM05D005383 ORTHO05D006722 2.2e-96 356.7 383 74.7
Lj4g0022432 Lotus japonicus HOM05D005383 ORTHO05D006722 2.9e-96 356.3 376 78.7
Gohir.D01G173100 Gossypium hirsutum HOM05D005383 ORTHO05D006722 6.4e-96 355.1 375 75.5
Gorai.002G214700 Gossypium raimondii HOM05D005383 ORTHO05D006722 8.3e-96 354.8 375 75.7
Glyma.05G167900 Glycine max HOM05D005383 ORTHO05D006722 1.1e-95 354.4 376 75.0
Psat1g221920 Pisum sativum HOM05D005383 ORTHO05D006722 1.1e-95 354.4 375 75.7
TPR.G2110 Trifolium pratense HOM05D005383 ORTHO05D006722 3.2e-95 352.8 379 76.3
Potri.004G221700 Populus trichocarpa HOM05D005383 ORTHO05D006722 9.2e-95 351.3 379 77.0
Eucgr.G00356 Eucalyptus grandis HOM05D005383 ORTHO05D006722 1.2e-94 350.9 376 76.6
Potri.003G010400 Populus trichocarpa HOM05D005383 ORTHO05D006722 1.6e-94 350.5 377 76.4
Glyma.08G126300 Glycine max HOM05D005383 ORTHO05D006722 2.7e-94 349.7 377 74.3
Nn5g27588 Nelumbo nucifera HOM05D005383 ORTHO05D006722 2.7e-94 349.7 373 75.6
COL.COLO4_17761 Corchorus olitorius HOM05D005383 ORTHO05D006722 3.5e-94 349.4 376 61.4
MD08G1239600 Malus domestica HOM05D005383 ORTHO05D006722 4.6e-94 349.0 365 73.7
Atru.chr6.733 Acer truncatum HOM05D005383 ORTHO05D006722 7.8e-94 348.2 374 75.9
EL10Ac2g02705 Beta vulgaris HOM05D005383 ORTHO05D006722 7.8e-94 348.2 375 77.3
Ciclev10001534m.g Citrus clementina HOM05D005383 ORTHO05D006722 1.0e-93 347.8 375 74.7
CSS0013900 Camellia sinensis var. sinensis HOM05D005383 ORTHO05D006722 1.7e-93 347.1 378 75.1
CSS0016011 Camellia sinensis var. sinensis HOM05D005383 ORTHO05D006722 1.7e-93 347.1 378 75.1
Lalb_Chr13g0295611 Lupinus albus HOM05D005383 ORTHO05D006722 3.9e-93 345.9 382 76.7
VMungo0251G3735 Vigna mungo HOM05D005383 ORTHO05D006722 4.3e-92 342.4 377 73.2
Cc02_g22940 Coffea canephora HOM05D005383 ORTHO05D006722 9.5e-92 341.3 373 76.1
RcHm_v2.0_Chr7g0220861 Rosa chinensis HOM05D005383 ORTHO05D006722 3.6e-91 339.3 364 74.7
Ciclev10003783m.g Citrus clementina HOM05D005383 ORTHO05D006722 8.0e-91 338.2 375 74.1
Nitab4.5_0009812g0010 Nicotiana tabacum HOM05D005383 ORTHO05D006722 1.0e-90 337.8 363 75.8
Phvul.002G248200 Phaseolus vulgaris HOM05D005383 ORTHO05D006722 1.4e-90 337.4 377 72.4
Hund12945 Selenicereus undatus HOM05D005383 ORTHO05D006722 1.4e-90 337.4 362 66.3
Nitab4.5_0000548g0200 Nicotiana tabacum HOM05D005383 ORTHO05D006722 6.8e-90 335.1 373 75.9
TAR628G0519 Trochodendron aralioides HOM05D005383 ORTHO05D006722 1.3e-88 330.9 372 71.2
FAN08G2879 Fragaria x ananassa HOM05D005383 ORTHO05D006722 6.4e-88 328.6 375 72.5
Rhsim11G0125900 Rhododendron simsii HOM05D005383 ORTHO05D006722 6.4e-88 328.6 371 73.9
FvH4_5g28700 Fragaria vesca HOM05D005383 ORTHO05D006722 8.3e-88 328.2 375 72.5
Hma1.2p1_1108F.1_g257860 Hydrangea macrophylla HOM05D005383 ORTHO05D006722 8.3e-88 328.2 376 74.2
MSTRG.5117 Avicennia marina HOM05D005383 ORTHO05D006722 1.9e-87 327.0 374 73.0
TWI23G0375 Tripterygium wilfordii HOM05D005383 ORTHO05D006722 1.9e-87 327.0 374 73.5
Peaxi162Scf00003g04037 Petunia axillaris HOM05D005383 ORTHO05D006722 7.0e-87 325.1 342 75.4
DCAR_025351 Daucus carota HOM05D005383 ORTHO05D006722 7.8e-86 321.6 343 73.2
Dinv01847 Davidia involucrata HOM05D005383 ORTHO05D006722 1.7e-85 320.5 347 76.9
vmacro01730 Vaccinium macrocarpon HOM05D005383 ORTHO05D006722 1.7e-85 320.5 381 76.1
FAN13G0305 Fragaria x ananassa HOM05D005383 ORTHO05D006722 2.3e-85 320.1 398 68.6
PGR042G1418 Punica granatum HOM05D005383 ORTHO05D006722 1.1e-84 317.8 386 70.7
Solyc03g083310.4 Solanum lycopersicum HOM05D005383 ORTHO05D006722 2.8e-83 313.2 384 67.7
TWI59G0781 Tripterygium wilfordii HOM05D005383 ORTHO05D006722 6.2e-83 312.0 374 73.3
TAR381G0956 Trochodendron aralioides HOM05D005383 ORTHO05D006722 1.1e-82 311.2 374 70.1
PGSC0003DMG400009082 Solanum tuberosum HOM05D005383 ORTHO05D006722 6.8e-82 308.5 368 67.7
arahy.Tifrunner.gnm1.ann1.I6AGPX Arachis hypogaea HOM05D005383 ORTHO05D006722 3.4e-81 306.2 347 79.3
arahy.Tifrunner.gnm1.ann1.E4SRBI Arachis hypogaea HOM05D005383 ORTHO05D006722 4.4e-81 305.8 347 79.3
CAN.G968.1 Capsicum annuum HOM05D005383 ORTHO05D006722 4.4e-81 305.8 377 71.6
THA.LOC104801420 Tarenaya hassleriana HOM05D005383 ORTHO05D006722 9.8e-81 304.7 380 72.9
Migut.B00804 Erythranthe guttata HOM05D005383 ORTHO05D006722 2.1e-78 297.0 357 70.9
Sopen03g023060 Solanum pennellii HOM05D005383 ORTHO05D006722 6.0e-78 295.4 381 65.9
Thhalv10028723m.g Eutrema salsugineum HOM05D005383 ORTHO05D006722 2.1e-75 287.0 382 69.6
Sabra03G0005300 Salix brachista HOM05D005383 ORTHO05D006722 2.1e-75 287.0 494 39.7
Lj9A301T38 Lonicera japonica HOM05D005383 ORTHO05D006722 4.7e-75 285.8 355 72.7
Sp6g13330 Schrenkiella parvula HOM05D005383 ORTHO05D006722 3.4e-73 279.6 367 69.2
PSO063G2254 Papaver somniferum HOM05D005383 ORTHO05D006722 3.8e-72 276.2 359 69.4
BraSC35t46002Z Brassica rapa HOM05D005383 ORTHO05D006722 8.4e-72 275.0 382 66.5
Aa31LG3G14030 Aethionema arabicum HOM05D005383 ORTHO05D006722 1.4e-71 274.2 389 66.8
Carub.0006s2631 Capsella rubella HOM05D005383 ORTHO05D006722 1.9e-71 273.9 381 69.3
A10p07980 Brassica napus HOM05D005383 ORTHO05D006722 4.1e-71 272.7 382 66.2
BcaC04g20728 Brassica carinata HOM05D005383 ORTHO05D006722 7.1e-71 271.9 382 66.0
BolC9t56882H Brassica oleracea HOM05D005383 ORTHO05D006722 7.1e-71 271.9 382 66.0
AT4G06634 Arabidopsis thaliana HOM05D005383 ORTHO05D006722 3.5e-70 269.6 381 68.5
SGA_v2.0_scaffold42G15921 Striga asiatica HOM05D005383 ORTHO05D006722 1.0e-69 268.1 389 64.3
PSO017G2626 Papaver somniferum HOM05D005383 ORTHO05D006722 2.3e-69 266.9 359 68.5
AL6G41240 Arabidopsis lyrata HOM05D005383 ORTHO05D006722 3.0e-69 266.5 388 66.5
CARHR260070 Cardamine hirsuta HOM05D005383 ORTHO05D006722 8.6e-69 265.0 384 69.8
CDE08G1140 Ceratophyllum demersum HOM05D005383 ORTHO05D006722 1.1e-68 264.6 376 65.7
Lsat_1_v5_gn_4_6600 Lactuca sativa HOM05D005383 ORTHO05D006722 4.3e-68 262.7 367 65.7
CDE02G2650 Ceratophyllum demersum HOM05D005383 ORTHO05D006722 5.6e-68 262.3 376 65.4
Aqoxy6G00141 Aquilegia oxysepala HOM05D005383 ORTHO05D006722 9.6e-68 261.5 334 71.3
Ciclev10003892m.g Citrus clementina HOM05D005383 ORTHO05D006722 3.6e-67 259.6 328 63.4
C09p39820 Brassica napus HOM05D005383 ORTHO05D006722 5.2e-66 255.8 370 65.1
HanXRQChr08g0209021 Helianthus annuus HOM05D005383 ORTHO05D006722 2.0e-65 253.8 348 67.0
unitig_699.g19853 Utricularia gibba HOM05D005383 ORTHO05D006722 6.4e-64 248.8 379 44.1
Actinidia00189 Actinidia chinensis HOM05D005383 ORTHO05D006722 1.9e-63 247.3 274 78.1
HanXRQChr04g0103661 Helianthus annuus HOM05D005383 ORTHO05D006722 1.9e-63 247.3 382 64.4
A03p16300 Brassica napus HOM05D005383 ORTHO05D006722 2.7e-62 243.4 366 62.0
C03p19190 Brassica napus HOM05D005383 ORTHO05D006722 4.6e-62 242.7 364 62.1
ECA233G1887 Erigeron canadensis HOM05D005383 ORTHO05D006722 6.0e-62 242.3 367 64.9
BcaB08g35467 Brassica carinata HOM05D005383 ORTHO05D006722 1.3e-61 241.1 381 63.0
BraA03t10921Z Brassica rapa HOM05D005383 ORTHO05D006722 3.3e-60 236.5 378 50.8
Sc07g0004970 Simmondsia chinensis HOM05D005383 ORTHO05D006722 4.0e-58 229.6 336 71.7
BcaC01g06075 Brassica carinata HOM05D005383 ORTHO05D006722 6.9e-58 228.8 363 62.0
BolC3t14307H Brassica oleracea HOM05D005383 ORTHO05D006722 9.0e-58 228.4 378 50.0
Lsat_1_v5_gn_8_160061 Lactuca sativa HOM05D005383 ORTHO05D006722 1.4e-55 221.1 269 74.0
MSTRG.16504 Avicennia marina HOM05D005383 ORTHO05D006722 2.7e-54 216.9 302 70.5
ClCG11G013400 Citrullus lanatus HOM05D005383 ORTHO05D006722 8.7e-53 211.8 132 98.5
Oeu036675.1 Olea europaea HOM05D005383 ORTHO05D006722 2.5e-52 210.3 319 66.1
BcaC01g06099 Brassica carinata HOM05D005383 ORTHO05D006722 1.3e-51 208.0 361 59.0
HPP92_013744 Vanilla planifolia HOM05D006763 ORTHO05D008659 4.5e-49 199.5 308 64.9
Sabra01G0167800 Salix brachista HOM05D005383 ORTHO05D006722 7.6e-49 198.7 182 66.5
ATR0071G030 Amborella trichopoda HOM05D005383 ORTHO05D006722 2.9e-48 196.8 325 65.2
HPP92_009272 Vanilla planifolia HOM05D005383 ORTHO05D006722 1.1e-47 194.9 359 57.1
Peaxi162Scf03254g00012 Petunia axillaris HOM05D005383 ORTHO05D006722 5.1e-45 186.0 168 61.3
AUR62041111 Chenopodium quinoa HOM05D005383 ORTHO05D006722 8.7e-45 185.3 179 59.8
unitig_747.g21262 Utricularia gibba HOM05D005383 ORTHO05D006722 1.1e-44 184.9 366 57.1
MD15G1431100 Malus domestica HOM05D005383 ORTHO05D006722 1.1e-42 178.3 306 62.4
Os02g0551900 Oryza sativa ssp. japonica HOM05D005383 ORTHO05D006722 5.3e-42 176.0 341 57.2
Actinidia39015 Actinidia chinensis HOM05D005383 ORTHO05D006722 3.4e-41 173.3 132 76.5
Os05g0106000 Oryza sativa ssp. japonica HOM05D005383 ORTHO05D006722 4.5e-41 172.9 377 53.1
FAN04G2588 Fragaria x ananassa HOM05D005383 ORTHO05D006722 7.6e-41 172.2 132 77.3
Zm00001eb267130 Zea mays HOM05D005383 ORTHO05D006722 2.3e-37 160.6 342 55.6
Zm00001eb181970 Zea mays HOM05D005383 ORTHO05D006722 6.7e-37 159.1 312 58.0
CAN.G982.21 Capsicum annuum HOM05D005383 ORTHO05D006722 2.5e-36 157.1 165 57.0
Zm00001eb243510 Zea mays HOM05D005383 ORTHO05D006722 6.3e-35 152.5 305 57.7
FAN18G2475 Fragaria x ananassa HOM05D005383 ORTHO05D006722 5.1e-29 132.9 132 63.6
AagrBONN_evm.TU.Sc2ySwM_228.1706 Anthoceros agrestis HOM05D005383 ORTHO05D006722 1.1e-26 125.2 245 63.3
SEGI_13518 Sequoiadendron giganteum HOM05D005383 ORTHO05D006722 1.4e-26 124.8 110 69.1
CBR_g52462 Chara braunii HOM05D005383 ORTHO05D006722 3.1e-26 123.6 281 56.9
Mapoly0095s0037 Marchantia polymorpha HOM05D005383 ORTHO05D006722 1.5e-25 121.3 318 54.4
Peaxi162Scf00003g03953 Petunia axillaris HOM05D000011 ORTHO05D011267 1.4e-21 108.2 155 43.2
Pp3c7_7980 Physcomitrium patens HOM05D005383 ORTHO05D006722 6.7e-21 105.9 333 51.7
SMO347G0081 Selaginella moellendorffii HOM05D005383 ORTHO05D006722 6.9e-18 95.9 228 55.3
ATR0071G005 Amborella trichopoda HOM05D005383 ORTHO05D006722 2.2e-16 90.9 92 53.3
arahy.Tifrunner.gnm1.ann1.L3LYUI Arachis hypogaea HOM05D005383 ORTHO05D031493 1.6e-14 84.7 58 84.5
arahy.Tifrunner.gnm1.ann1.0L29ML Arachis hypogaea HOM05D005383 ORTHO05D006722 2.7e-14 84.0 56 87.5
arahy.Tifrunner.gnm1.ann1.XX0GIY Arachis hypogaea HOM05D005383 ORTHO05D006722 1.4e-13 81.6 56 85.7
arahy.Tifrunner.gnm1.ann1.VA1YNF Arachis hypogaea HOM05D005383 ORTHO05D006722 4.8e-11 73.2 84 69.0


User provided reference genes

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