Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C011355.2 Cucumis melo HOM05D005168 ORTHO05D006358 6.5e-63 243.8 117 100.0
CsaV3_2G024260 Cucumis sativus L. HOM05D005168 ORTHO05D006358 5.2e-60 234.2 117 96.6
Sed0007604 Sechium edule HOM05D005168 ORTHO05D006358 4.1e-57 224.6 117 91.5
Psat5g045240 Pisum sativum HOM05D005168 ORTHO05D006358 3.1e-41 171.8 117 67.5
CANSAT11G0916 Cannabis sativa HOM05D005168 ORTHO05D006358 5.4e-41 171.0 117 68.4
Ca_00384_v3 Cicer arietinum L. HOM05D005168 ORTHO05D006358 5.4e-41 171.0 117 67.5
Lalb_Chr11g0067001 Lupinus albus HOM05D005168 ORTHO05D006358 4.5e-40 167.9 115 69.6
CiPaw.07G147200 Carya illinoinensis HOM05D005168 ORTHO05D006358 1.5e-38 162.9 117 67.5
Medtr3g102420 Medicago truncatula HOM05D005168 ORTHO05D006358 1.5e-38 162.9 115 67.0
Lj1g0018211 Lotus japonicus HOM05D005168 ORTHO05D006358 2.5e-38 162.2 117 65.0
Prupe.6G147400 Prunus persica HOM05D005168 ORTHO05D006358 7.2e-38 160.6 118 66.1
MD08G1010500 Malus domestica HOM05D005168 ORTHO05D006358 1.2e-37 159.8 118 66.1
QL01p031168 Quercus lobata HOM05D005168 ORTHO05D006358 3.6e-37 158.3 116 62.9
PGR031G0142 Punica granatum HOM05D005168 ORTHO05D006358 8.0e-37 157.1 117 65.8
Haze_22662 Corylus avellana HOM05D005168 ORTHO05D006358 1.8e-36 156.0 117 65.0
arahy.Tifrunner.gnm1.ann1.GU7A1M Arachis hypogaea HOM05D005168 ORTHO05D006358 2.3e-36 155.6 119 62.2
Cfa012889 Carpinus fangiana HOM05D005168 ORTHO05D006358 5.2e-36 154.5 117 65.0
arahy.Tifrunner.gnm1.ann1.TKX6L5 Arachis hypogaea HOM05D005168 ORTHO05D006358 6.8e-36 154.1 119 61.3
Haze_17776 Corylus avellana HOM05D005168 ORTHO05D006358 6.8e-36 154.1 117 64.1
Phvul.001G175600 Phaseolus vulgaris HOM05D005168 ORTHO05D006358 1.3e-34 149.8 117 61.5
VMungo1080G1160 Vigna mungo HOM05D005168 ORTHO05D006358 1.7e-34 149.4 117 59.8
TWI56G1449 Tripterygium wilfordii HOM05D005168 ORTHO05D006358 3.7e-34 148.3 117 62.4
Aa31LG4G6030 Aethionema arabicum HOM05D005168 ORTHO05D006358 3.5e-32 141.7 121 60.3
Eucgr.C01258 Eucalyptus grandis HOM05D005168 ORTHO05D006358 3.5e-32 141.7 117 59.0
Eucgr.H00960 Eucalyptus grandis HOM05D005168 ORTHO05D006358 4.5e-32 141.4 117 58.1
Glyma.03G178900 Glycine max HOM05D005168 ORTHO05D006358 1.3e-31 139.8 118 58.5
GSVIVG01009945001 Vitis vinifera HOM05D005168 ORTHO05D006358 2.9e-31 138.7 125 55.2
Atru.chr1.3654 Acer truncatum HOM05D005168 ORTHO05D006358 3.8e-31 138.3 121 58.7
AL5G14600 Arabidopsis lyrata HOM05D005168 ORTHO05D006358 8.6e-31 137.1 120 58.3
Cpa.g.sc58.102 Carica papaya HOM05D005168 ORTHO05D006358 1.9e-30 136.0 121 57.9
THA.LOC104825468 Tarenaya hassleriana HOM05D005168 ORTHO05D006358 4.3e-30 134.8 121 57.9
AT3G25940 Arabidopsis thaliana HOM05D005168 ORTHO05D006358 5.6e-30 134.4 120 56.7
THA.LOC104811420 Tarenaya hassleriana HOM05D005168 ORTHO05D006358 5.6e-30 134.4 121 57.9
Duzib093G1099 Durio zibethinus HOM05D005168 ORTHO05D006358 9.5e-30 133.7 121 58.7
THA.LOC104825467 Tarenaya hassleriana HOM05D005168 ORTHO05D006358 1.2e-29 133.3 121 56.2
BcaB03g14336 Brassica carinata HOM05D005168 ORTHO05D006358 1.6e-29 132.9 120 56.7
BcaB03g14344 Brassica carinata HOM05D005168 ORTHO05D006358 1.6e-29 132.9 120 56.7
A07p16030 Brassica napus HOM05D005168 ORTHO05D006358 1.6e-29 132.9 120 56.7
C07p23400 Brassica napus HOM05D005168 ORTHO05D006358 1.6e-29 132.9 120 56.7
BolC7t42872H Brassica oleracea HOM05D005168 ORTHO05D006358 1.6e-29 132.9 120 56.7
BraA07t29331Z Brassica rapa HOM05D005168 ORTHO05D006358 1.6e-29 132.9 120 56.7
FvH4_1g24780 Fragaria vesca HOM05D005168 ORTHO05D006358 1.6e-29 132.9 114 59.6
FAN23G3095 Fragaria x ananassa HOM05D005168 ORTHO05D006358 2.8e-29 132.1 121 58.7
Thhalv10019327m.g Eutrema salsugineum HOM05D005168 ORTHO05D006358 3.6e-29 131.7 120 56.7
Sp1g17830 Schrenkiella parvula HOM05D005168 ORTHO05D006358 4.7e-29 131.3 120 55.8
DCAR_015742 Daucus carota HOM05D005168 ORTHO05D006358 6.1e-29 131.0 120 56.7
Gohir.A06G002600 Gossypium hirsutum HOM05D005168 ORTHO05D006358 6.1e-29 131.0 120 57.5
Gohir.D06G005600 Gossypium hirsutum HOM05D005168 ORTHO05D006358 6.1e-29 131.0 120 57.5
Gorai.010G002800 Gossypium raimondii HOM05D005168 ORTHO05D006358 6.1e-29 131.0 120 57.5
Thecc.08G047200 Theobroma cacao HOM05D005168 ORTHO05D006358 6.1e-29 131.0 120 55.8
BcaC05g25900 Brassica carinata HOM05D005168 ORTHO05D006358 1.0e-28 130.2 120 55.0
C05p18550 Brassica napus HOM05D005168 ORTHO05D006358 1.0e-28 130.2 120 55.0
BolC5t30566H Brassica oleracea HOM05D005168 ORTHO05D006358 1.0e-28 130.2 120 55.0
BraA06t24725Z Brassica rapa HOM05D005168 ORTHO05D006358 1.0e-28 130.2 120 55.0
Thhalv10009132m.g Eutrema salsugineum HOM05D005168 ORTHO05D006358 1.0e-28 130.2 120 55.8
Manes.14G063600 Manihot esculenta HOM05D005168 ORTHO05D006358 1.0e-28 130.2 118 55.1
CARHR146930 Cardamine hirsuta HOM05D005168 ORTHO05D006358 1.4e-28 129.8 120 55.8
CARHR020540 Cardamine hirsuta HOM05D005168 ORTHO05D006358 1.8e-28 129.4 120 55.0
Potri.013G015000 Populus trichocarpa HOM05D005168 ORTHO05D006358 3.0e-28 128.6 118 52.5
BcaB07g32021 Brassica carinata HOM05D005168 ORTHO05D006358 6.8e-28 127.5 120 53.3
A06p16200 Brassica napus HOM05D005168 ORTHO05D006358 1.2e-27 126.7 120 54.2
Hma1.2p1_0733F.1_g210170 Hydrangea macrophylla HOM05D005168 ORTHO05D006358 1.5e-27 126.3 119 54.6
SGA_v2.0_scaffold47G17500 Striga asiatica HOM05D005168 ORTHO05D006358 2.0e-27 125.9 120 50.8
Nn3g19859 Nelumbo nucifera HOM05D005168 ORTHO05D006358 4.4e-27 124.8 120 51.7
PSO541G4324 Papaver somniferum HOM05D005168 ORTHO05D006358 5.8e-27 124.4 125 52.0
PSO675G5410 Papaver somniferum HOM05D005168 ORTHO05D006358 5.8e-27 124.4 125 52.0
Carub.0005s0380 Capsella rubella HOM05D005168 ORTHO05D006358 9.8e-27 123.6 112 56.2
SGA_v2.0_scaffold19G08553 Striga asiatica HOM05D005168 ORTHO05D006358 9.8e-27 123.6 120 50.0
Sc15g0004820 Simmondsia chinensis HOM05D005168 ORTHO05D006358 2.9e-26 122.1 125 48.8
CSS0038486 Camellia sinensis var. sinensis HOM05D005168 ORTHO05D006358 3.7e-26 121.7 120 50.8
CAN.G727.4 Capsicum annuum HOM05D005168 ORTHO05D006358 8.3e-26 120.6 120 51.7
Actinidia37940 Actinidia chinensis HOM05D005168 ORTHO05D006358 1.1e-25 120.2 120 51.7
TAR622G0958 Trochodendron aralioides HOM05D005168 ORTHO05D006358 1.1e-25 120.2 124 50.0
Ciclev10003775m.g Citrus clementina HOM05D005168 ORTHO05D006358 1.4e-25 119.8 122 50.0
CSS0004439 Camellia sinensis var. sinensis HOM05D005168 ORTHO05D006358 2.4e-25 119.0 122 49.2
Peaxi162Scf00553g00216 Petunia axillaris HOM05D005168 ORTHO05D006358 3.2e-25 118.6 120 49.2
Nitab4.5_0000337g0010 Nicotiana tabacum HOM05D005168 ORTHO05D006358 5.4e-25 117.9 120 50.0
Nitab4.5_0003251g0060 Nicotiana tabacum HOM05D005168 ORTHO05D006358 5.4e-25 117.9 120 50.0
Solyc04g054510.4 Solanum lycopersicum HOM05D005168 ORTHO05D006358 9.2e-25 117.1 120 50.0
PGSC0003DMG400022038 Solanum tuberosum HOM05D005168 ORTHO05D006358 9.2e-25 117.1 120 50.0
MSTRG.22344 Avicennia marina HOM05D005168 ORTHO05D006358 1.6e-24 116.3 118 47.5
Os03g0711700 Oryza sativa ssp. japonica HOM05D005168 ORTHO05D006358 2.0e-24 115.9 125 46.4
RcHm_v2.0_Chr2g0124111 Rosa chinensis HOM05D005168 ORTHO05D006358 3.5e-24 115.2 118 51.7
SalBow8G1113 Salvia bowleyana HOM05D005168 ORTHO05D006358 4.6e-24 114.8 118 45.8
CDE11G0347 Ceratophyllum demersum HOM05D005168 ORTHO05D006358 7.8e-24 114.0 123 45.5
vmacro04368 Vaccinium macrocarpon HOM05D005168 ORTHO05D006358 1.3e-23 113.2 118 48.3
Hund09202 Selenicereus undatus HOM05D005168 ORTHO05D006358 1.7e-23 112.8 125 46.4
EL10Ac1g02165 Beta vulgaris HOM05D005168 ORTHO05D006358 2.3e-23 112.5 125 44.8
Lsat_1_v5_gn_2_14120 Lactuca sativa HOM05D005168 ORTHO05D006358 2.3e-23 112.5 111 49.5
ECA238G1857 Erigeron canadensis HOM05D005168 ORTHO05D006358 8.6e-23 110.5 112 48.2
Rhsim07G0250400 Rhododendron simsii HOM05D005168 ORTHO05D006358 8.6e-23 110.5 116 48.3
Cc10_g01450 Coffea canephora HOM05D005168 ORTHO05D006358 2.5e-22 109.0 116 46.6
HanXRQChr04g0101211 Helianthus annuus HOM05D005168 ORTHO05D006358 2.1e-21 105.9 111 46.8
Zm00001eb054840 Zea mays HOM05D005168 ORTHO05D006358 2.1e-21 105.9 110 50.0
Dinv40488 Davidia involucrata HOM05D005168 ORTHO05D006358 3.6e-21 105.1 103 56.3
Mapoly0043s0107 Marchantia polymorpha HOM05D005168 ORTHO05D006358 8.0e-21 104.0 124 45.2
Migut.N03173 Erythranthe guttata HOM05D005168 ORTHO05D006358 1.4e-20 103.2 118 39.0
ClCG08G014180 Citrullus lanatus HOM05D005168 ORTHO05D006358 2.3e-20 102.4 57 91.2
unitig_22.g6797 Utricularia gibba HOM05D005168 ORTHO05D006358 6.8e-20 100.9 118 42.4
Sabra13G0016900 Salix brachista HOM05D005168 ORTHO05D006358 1.2e-19 100.1 96 50.0
Sopen04g024330 Solanum pennellii HOM05D005168 ORTHO05D006358 2.6e-19 99.0 107 48.6
Sabra13G0012900 Salix brachista HOM05D005168 ORTHO05D006358 4.4e-19 98.2 94 50.0
AagrBONN_evm.TU.Sc2ySwM_368.3393 Anthoceros agrestis HOM05D005168 ORTHO05D006358 7.5e-19 97.4 124 38.7
Aqoxy2G01931 Aquilegia oxysepala HOM05D005168 ORTHO05D006358 7.5e-19 97.4 124 42.7
SEGI_04309 Sequoiadendron giganteum HOM05D005168 ORTHO05D006358 1.9e-17 92.8 122 41.0
AL1G32870 Arabidopsis lyrata HOM05D005168 ORTHO05D006358 5.4e-17 91.3 67 65.7
Eucgr.L01842 Eucalyptus grandis HOM05D005168 ORTHO05D006358 6.0e-16 87.8 72 55.6
ClCG08G014170 Citrullus lanatus HOM05D005168 ORTHO05D006358 1.7e-15 86.3 42 92.9
Eucgr.F02832 Eucalyptus grandis HOM05D005168 ORTHO05D006358 2.3e-15 85.9 78 52.6
TPR.G9182 Trifolium pratense HOM05D005168 ORTHO05D006358 3.0e-15 85.5 80 55.0
Pp3c24_7070 Physcomitrium patens HOM05D005168 ORTHO05D006358 2.5e-14 82.4 153 32.0
FAN26G0870 Fragaria x ananassa HOM05D005168 ORTHO05D006358 3.3e-14 82.0 69 59.4
AT1G20065 Arabidopsis thaliana HOM05D005168 ORTHO05D006358 4.3e-14 81.6 62 61.3
Ca_15982_v3 Cicer arietinum L. HOM05D005168 ORTHO05D006358 4.3e-14 81.6 53 62.3
MD15G1010600 Malus domestica HOM05D005168 ORTHO05D006358 3.6e-13 78.6 52 65.4
Glyma.19G179600 Glycine max HOM05D005168 ORTHO05D006358 6.8e-12 74.3 66 53.0
THA.LOC109116732 Tarenaya hassleriana HOM05D005168 ORTHO05D006358 1.5e-11 73.2 53 67.9
SMO351G0141 Selaginella moellendorffii HOM05D005168 ORTHO05D006358 2.0e-11 72.8 106 36.8
Glyma.06G213500 Glycine max HOM05D005168 ORTHO05D006358 2.2e-10 69.3 65 52.3
Glyma.08G246200 Glycine max HOM05D005168 ORTHO05D006358 2.2e-10 69.3 49 63.3
Glyma.17G201200 Glycine max HOM05D005168 ORTHO05D006358 3.7e-10 68.6 65 52.3
HPP92_028162 Vanilla planifolia HOM05D005168 ORTHO05D006358 3.7e-10 68.6 85 40.0
BcaC05g25904 Brassica carinata HOM05D005168 ORTHO05D006358 4.9e-10 68.2 87 44.8
ATR0057G015 Amborella trichopoda HOM05D005168 ORTHO05D006358 8.3e-10 67.4 97 39.2
Aqoxy6G02286 Aquilegia oxysepala HOM05D005168 ORTHO05D006358 8.3e-10 67.4 110 37.3
Glyma.08G301902 Glycine max HOM05D005168 ORTHO05D006358 1.1e-09 67.0 81 43.2
Glyma.11G172400 Glycine max HOM05D005168 ORTHO05D006358 4.1e-09 65.1 67 49.3
arahy.Tifrunner.gnm1.ann1.BQ9Q0E Arachis hypogaea HOM05D005168 ORTHO05D006358 1.7e-07 59.7 55 49.1
Cre01.g018000 Chlamydomonas reinhardtii HOM05D005168 ORTHO05D006358 2.3e-07 59.3 122 30.3
CARHR001260 Cardamine hirsuta HOM05D006029 ORTHO05D007439 1.9e-06 56.2 116 32.8
Ah.01g021000 Amaranthus hybridus HOM05D005168 ORTHO05D006358 3.3e-06 55.5 55 50.9
A03p11160 Brassica napus HOM05D000069 ORTHO05D021930 4.3e-06 55.1 122 31.1
AT1G01210 Arabidopsis thaliana HOM05D006029 ORTHO05D007439 7.3e-06 54.3 116 31.0
AT4G07950 Arabidopsis thaliana HOM05D006029 ORTHO05D007439 7.3e-06 54.3 116 31.0
Carub.0003s3000 Capsella rubella HOM05D006029 ORTHO05D007439 7.3e-06 54.3 116 31.9


User provided reference genes

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