Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C010743.2 Cucumis melo HOM05D003724 ORTHO05D004367 0.0e+00 1261.5 648 100.0
CsaV3_2G025450 Cucumis sativus L. HOM05D003724 ORTHO05D004367 0.0e+00 1103.2 586 96.8
Sed0021729 Sechium edule HOM05D003724 ORTHO05D004367 1.2e-291 1006.1 603 87.4
ClCG08G017130 Citrullus lanatus HOM05D003724 ORTHO05D004367 2.1e-288 995.3 600 88.0
Sed0012468 Sechium edule HOM05D003724 ORTHO05D004367 9.6e-241 837.0 553 81.4
RcHm_v2.0_Chr4g0430341 Rosa chinensis HOM05D003724 ORTHO05D004367 3.3e-233 812.0 624 71.0
FvH4_4g23800 Fragaria vesca HOM05D003724 ORTHO05D004367 1.3e-232 810.1 624 70.4
Actinidia08073 Actinidia chinensis HOM05D003724 ORTHO05D004367 6.9e-231 804.3 614 70.7
Atru.chr11.2319 Acer truncatum HOM05D003724 ORTHO05D004367 2.6e-230 802.4 613 71.5
RcHm_v2.0_Chr4g0430291 Rosa chinensis HOM05D003724 ORTHO05D004367 3.8e-229 798.5 624 69.2
Potri.003G173200 Populus trichocarpa HOM05D003724 ORTHO05D004367 6.5e-229 797.7 614 70.4
Dinv10959 Davidia involucrata HOM05D003724 ORTHO05D004367 1.1e-228 797.0 604 71.4
Thecc.02G209200 Theobroma cacao HOM05D003724 ORTHO05D004367 1.1e-228 797.0 611 69.4
CANSAT01G0850 Cannabis sativa HOM05D003724 ORTHO05D004367 1.4e-228 796.6 616 70.6
FAN22G0779 Fragaria x ananassa HOM05D003724 ORTHO05D004367 5.5e-228 794.7 626 69.3
Prupe.1G226200 Prunus persica HOM05D003724 ORTHO05D004367 2.1e-227 792.7 621 69.2
Lj3C1068T3 Lonicera japonica HOM05D003724 ORTHO05D004367 1.1e-225 786.9 617 69.5
MD16G1118900 Malus domestica HOM05D003724 ORTHO05D004367 1.9e-225 786.2 633 68.1
FAN17G0970 Fragaria x ananassa HOM05D003724 ORTHO05D004367 3.3e-225 785.4 652 66.7
Gohir.A03G126400 Gossypium hirsutum HOM05D003724 ORTHO05D004367 4.8e-224 781.6 606 69.1
QL03p052803 Quercus lobata HOM05D003724 ORTHO05D004367 3.1e-223 778.9 627 67.9
TWI75G0323 Tripterygium wilfordii HOM05D003724 ORTHO05D004367 6.9e-223 777.7 614 68.6
Gorai.005G167400 Gossypium raimondii HOM05D003724 ORTHO05D004367 1.5e-222 776.5 606 68.8
Migut.C00176 Erythranthe guttata HOM05D003724 ORTHO05D004367 2.0e-222 776.2 608 69.1
PGR102G1478 Punica granatum HOM05D003724 ORTHO05D004367 1.7e-221 773.1 615 68.9
Cpa.g.sc43.54 Carica papaya HOM05D003724 ORTHO05D004367 2.9e-221 772.3 620 68.4
Oeu036873.1 Olea europaea HOM05D003724 ORTHO05D004367 8.5e-221 770.8 613 68.7
THA.LOC104825509 Tarenaya hassleriana HOM05D003724 ORTHO05D004367 1.4e-220 770.0 612 67.2
CiPaw.05G110100 Carya illinoinensis HOM05D003724 ORTHO05D004367 1.2e-219 766.9 616 68.3
MD13G1118700 Malus domestica HOM05D003724 ORTHO05D004367 2.0e-217 759.6 624 67.5
Oeu060814.1 Olea europaea HOM05D003724 ORTHO05D004367 2.2e-216 756.1 625 67.7
Migut.K00732 Erythranthe guttata HOM05D003724 ORTHO05D004367 2.4e-215 752.7 615 67.3
Actinidia30650 Actinidia chinensis HOM05D003724 ORTHO05D004367 5.3e-215 751.5 616 67.9
Solyc04g007330.3 Solanum lycopersicum HOM05D003724 ORTHO05D004367 4.5e-214 748.4 611 66.8
Sabra03G0126700 Salix brachista HOM05D003724 ORTHO05D004367 3.2e-212 742.3 614 66.4
Nitab4.5_0003981g0060 Nicotiana tabacum HOM05D003724 ORTHO05D004367 5.5e-212 741.5 619 65.4
Sopen04g002390 Solanum pennellii HOM05D003724 ORTHO05D004367 7.2e-212 741.1 612 66.3
Medtr3g085380 Medicago truncatula HOM05D003724 ORTHO05D004367 1.4e-210 736.9 618 65.9
arahy.Tifrunner.gnm1.ann1.3XH1N1 Arachis hypogaea HOM05D003724 ORTHO05D004367 1.8e-210 736.5 611 65.6
Potri.001G055201 Populus trichocarpa HOM05D003724 ORTHO05D004367 2.3e-210 736.1 639 65.1
SalBow2G1610 Salvia bowleyana HOM05D003724 ORTHO05D004367 5.2e-210 734.9 611 66.4
TPR.G28283 Trifolium pratense HOM05D003724 ORTHO05D004367 1.5e-209 733.4 627 64.9
Rhsim12G0026000 Rhododendron simsii HOM05D003724 ORTHO05D004367 4.4e-209 731.9 606 66.3
Lj1g0003468 Lotus japonicus HOM05D003724 ORTHO05D004367 1.3e-208 730.3 615 66.5
Hund06087 Selenicereus undatus HOM05D003724 ORTHO05D004367 2.2e-208 729.6 653 62.2
Psat5g096280 Pisum sativum HOM05D003724 ORTHO05D004367 3.8e-205 718.8 617 64.2
TAR374G1082 Trochodendron aralioides HOM05D003724 ORTHO05D004367 1.5e-204 716.8 604 65.6
Thhalv10018311m.g Eutrema salsugineum HOM05D003724 ORTHO05D004367 1.9e-204 716.5 609 65.8
Gohir.D02G149500 Gossypium hirsutum HOM05D003724 ORTHO05D004367 6.1e-203 711.4 611 65.0
Aqoxy7G01914 Aquilegia oxysepala HOM05D003724 ORTHO05D004367 1.4e-202 710.3 617 64.3
Sp5g22320 Schrenkiella parvula HOM05D003724 ORTHO05D004367 1.5e-201 706.8 603 65.2
Aqoxy5G02771 Aquilegia oxysepala HOM05D003724 ORTHO05D004367 3.3e-201 705.7 618 63.8
Peaxi162Scf00128g01233 Petunia axillaris HOM05D003724 ORTHO05D004367 3.3e-201 705.7 623 64.5
ECA233G0767 Erigeron canadensis HOM05D003724 ORTHO05D004367 9.7e-201 704.1 617 63.4
VMungo1383G3407 Vigna mungo HOM05D003724 ORTHO05D004367 1.3e-200 703.7 631 62.3
HanXRQChr08g0207781 Helianthus annuus HOM05D003724 ORTHO05D004367 2.8e-200 702.6 617 63.4
Lalb_Chr01g0009271 Lupinus albus HOM05D003724 ORTHO05D004367 6.3e-200 701.4 626 63.1
AL2G25920 Arabidopsis lyrata HOM05D003724 ORTHO05D004367 8.2e-200 701.0 612 64.1
Ca_16461_v3 Cicer arietinum L. HOM05D003724 ORTHO05D004367 5.3e-199 698.4 616 63.8
SGA_v2.0_scaffold9G04687 Striga asiatica HOM05D003724 ORTHO05D004367 3.5e-198 695.7 603 64.8
Aa31sc377G30 Aethionema arabicum HOM05D003724 ORTHO05D004367 1.9e-196 689.9 636 61.6
AUR62021613 Chenopodium quinoa HOM05D003724 ORTHO05D004367 3.2e-196 689.1 617 60.1
Nitab4.5_0002441g0080 Nicotiana tabacum HOM05D003724 ORTHO05D004367 3.2e-196 689.1 646 60.8
AT1G67370 Arabidopsis thaliana HOM05D003724 ORTHO05D004367 4.2e-196 688.7 610 63.1
CARHR059910 Cardamine hirsuta HOM05D003724 ORTHO05D004367 1.2e-195 687.2 616 63.0
Haze_12416 Corylus avellana HOM05D003724 ORTHO05D004367 1.2e-195 687.2 557 67.5
PSO478G4090 Papaver somniferum HOM05D003724 ORTHO05D004367 1.2e-195 687.2 616 63.1
Lalb_Chr03g0034531 Lupinus albus HOM05D003724 ORTHO05D004367 1.6e-195 686.8 634 61.5
Sabra01G0039800 Salix brachista HOM05D003724 ORTHO05D004367 2.7e-195 686.0 637 61.9
A07p33960 Brassica napus HOM05D003724 ORTHO05D004367 8.8e-194 681.0 609 62.1
PSO782G1352 Papaver somniferum HOM05D003724 ORTHO05D004367 2.0e-193 679.9 616 62.2
PSO339G4917 Papaver somniferum HOM05D003724 ORTHO05D004367 3.4e-193 679.1 616 62.5
BolC6t39148H Brassica oleracea HOM05D003724 ORTHO05D004367 7.5e-193 677.9 607 62.3
BraA07t31023Z Brassica rapa HOM05D003724 ORTHO05D004367 2.8e-192 676.0 607 62.1
CSS0007637 Camellia sinensis var. sinensis HOM05D003724 ORTHO05D004367 1.4e-191 673.7 651 60.4
TAR622G1117 Trochodendron aralioides HOM05D003724 ORTHO05D004367 1.4e-191 673.7 628 62.1
BcaC08g46167 Brassica carinata HOM05D003724 ORTHO05D004367 3.1e-191 672.5 605 61.8
C06p42900 Brassica napus HOM05D003724 ORTHO05D004367 7.0e-191 671.4 607 61.8
PSO384G3745 Papaver somniferum HOM05D003724 ORTHO05D004367 1.6e-190 670.2 614 61.6
PSO478G5007 Papaver somniferum HOM05D003724 ORTHO05D004367 2.7e-190 669.5 616 61.7
Lsat_1_v5_gn_8_147680 Lactuca sativa HOM05D003724 ORTHO05D004367 1.0e-189 667.5 608 61.3
AUR62008480 Chenopodium quinoa HOM05D003724 ORTHO05D004367 5.0e-189 665.2 634 58.4
PSO782G3500 Papaver somniferum HOM05D003724 ORTHO05D004367 1.5e-188 663.7 613 61.8
Nitab4.5_0003884g0070 Nicotiana tabacum HOM05D003724 ORTHO05D004367 6.8e-186 654.8 592 62.7
Glyma.18G006800 Glycine max HOM05D003724 ORTHO05D004367 1.5e-185 653.7 490 70.2
Sc04g0010100 Simmondsia chinensis HOM05D003724 ORTHO05D004367 2.0e-185 653.3 570 64.2
arahy.Tifrunner.gnm1.ann1.QLFJ9Y Arachis hypogaea HOM05D003724 ORTHO05D004367 1.4e-183 647.1 611 59.7
PGSC0003DMG400029108 Solanum tuberosum HOM05D003724 ORTHO05D004367 2.4e-183 646.4 560 63.8
Lj1g0008936 Lotus japonicus HOM05D003724 ORTHO05D004367 7.0e-183 644.8 621 60.5
ATR0561G244 Amborella trichopoda HOM05D003724 ORTHO05D004367 1.3e-181 640.6 624 60.3
EL10Ac6g13492 Beta vulgaris HOM05D003724 ORTHO05D004367 1.2e-179 634.0 628 57.8
GSVIVG01010479001 Vitis vinifera HOM05D003724 ORTHO05D004367 7.5e-177 624.8 529 65.8
HPP92_003196 Vanilla planifolia HOM05D003724 ORTHO05D004367 3.7e-176 622.5 617 58.5
Nn3g16465 Nelumbo nucifera HOM05D003724 ORTHO05D004367 3.2e-175 619.4 631 58.5
RcHm_v2.0_Chr4g0430321 Rosa chinensis HOM05D003724 ORTHO05D004367 5.4e-175 618.6 524 65.5
Cc09_g04930 Coffea canephora HOM05D003724 ORTHO05D004367 7.8e-174 614.8 556 61.9
CDE05G2922 Ceratophyllum demersum HOM05D003724 ORTHO05D004367 2.5e-172 609.8 612 56.9
Nitab4.5_0002699g0070 Nicotiana tabacum HOM05D003724 ORTHO05D004367 7.3e-172 608.2 586 60.2
Os09g0506800 Oryza sativa ssp. japonica HOM05D003724 ORTHO05D004367 1.6e-171 607.1 619 56.9
Carub.0002s1366 Capsella rubella HOM05D003724 ORTHO05D004367 6.8e-170 601.7 555 61.1
Ah.01g020690 Amaranthus hybridus HOM05D003724 ORTHO05D004367 1.3e-168 597.4 627 55.0
Zm00001eb102420 Zea mays HOM05D003724 ORTHO05D004367 3.2e-167 592.8 627 56.3
Ciclev10033677m.g Citrus clementina HOM05D003724 ORTHO05D004367 4.7e-163 578.9 583 59.2
vmacro01062 Vaccinium macrocarpon HOM05D003724 ORTHO05D004367 3.1e-154 549.7 400 72.8
Manes.12G011600 Manihot esculenta HOM05D003724 ORTHO05D004367 3.4e-153 546.2 345 81.4
Glyma.11G250400 Glycine max HOM05D003724 ORTHO05D004367 1.2e-147 527.7 518 58.1
CAN.G804.4 Capsicum annuum HOM05D003724 ORTHO05D004367 2.9e-144 516.5 338 79.3
CSS0039632 Camellia sinensis var. sinensis HOM05D003724 ORTHO05D004367 9.9e-137 491.5 319 78.7
BcaB03g15202 Brassica carinata HOM05D003724 ORTHO05D004367 1.3e-136 491.1 337 75.4
FAN24G3534 Fragaria x ananassa HOM05D003724 ORTHO05D004367 1.2e-134 484.6 498 56.6
MBI06_g20299_MAGBIO Magnolia biondii HOM05D003724 ORTHO05D004367 5.6e-132 475.7 622 50.6
PSO339G0549 Papaver somniferum HOM05D003724 ORTHO05D004367 4.8e-131 472.6 607 48.1
C06p38720 Brassica napus HOM05D003724 ORTHO05D004367 4.0e-130 469.5 620 47.7
MBI06_g46773_MAGBIO Magnolia biondii HOM05D003724 ORTHO05D004367 2.1e-126 457.2 437 59.5
unitig_8.g3138 Utricularia gibba HOM05D003724 ORTHO05D004367 1.5e-124 451.1 516 52.7
COL.COLO4_20398 Corchorus olitorius HOM05D003724 ORTHO05D004367 9.0e-114 415.2 393 60.3
AagrBONN_evm.TU.Sc2ySwM_368.2626 Anthoceros agrestis HOM05D003724 ORTHO05D004367 4.3e-108 396.4 647 41.7
AL1G56910 Arabidopsis lyrata HOM05D003724 ORTHO05D004367 1.6e-94 351.3 375 58.1
CARHR058050 Cardamine hirsuta HOM05D003724 ORTHO05D004367 3.9e-93 346.7 278 68.3
PSO170G4962 Papaver somniferum HOM05D003724 ORTHO05D004367 5.3e-90 336.3 381 51.7
DCAR_026466 Daucus carota HOM05D003724 ORTHO05D004367 1.1e-87 328.6 196 86.7
FAN12G2603 Fragaria x ananassa HOM05D003724 ORTHO05D004367 2.1e-86 324.3 340 59.4
Mapoly0003s0194 Marchantia polymorpha HOM05D003724 ORTHO05D004367 1.8e-85 321.2 540 40.0
MBI06_g32743_MAGBIO Magnolia biondii HOM05D003724 ORTHO05D004367 3.5e-81 307.0 326 57.1
CBR_g17956 Chara braunii HOM05D003724 ORTHO05D004367 1.0e-80 305.4 683 36.2
PSO339G0625 Papaver somniferum HOM05D003724 ORTHO05D004367 2.9e-80 303.9 360 49.7
SHI17968 Sapria himalayana HOM05D003724 ORTHO05D004367 7.2e-79 299.3 232 69.0
SMO116G0148 Selaginella moellendorffii HOM05D003724 ORTHO05D004367 3.0e-69 267.3 226 58.4
Solyc05g015370.3 Solanum lycopersicum HOM05D003724 ORTHO05D004367 2.0e-65 254.6 244 59.0
CAN.G804.3 Capsicum annuum HOM05D003724 ORTHO05D004367 5.0e-64 250.0 268 54.9
AT4G32200 Arabidopsis thaliana HOM05D003724 ORTHO05D004367 1.5e-63 248.4 341 48.4
FvH4_4g23791 Fragaria vesca HOM05D003724 ORTHO05D004367 2.6e-60 237.7 270 53.0
Pp3c5_4780 Physcomitrium patens HOM05D003724 ORTHO05D004367 2.9e-59 234.2 737 30.8
SHI17969 Sapria himalayana HOM05D003724 ORTHO05D004367 1.6e-57 228.4 267 52.1
FvH4_2g22740 Fragaria vesca HOM05D003724 ORTHO05D004367 1.5e-55 221.9 265 50.6
FAN12G4010 Fragaria x ananassa HOM05D003724 ORTHO05D004367 2.8e-54 217.6 244 52.9
Os12g0606600 Oryza sativa ssp. japonica HOM05D003724 ORTHO05D004367 1.4e-50 205.3 238 49.6
PSO782G0388 Papaver somniferum HOM05D003724 ORTHO05D004367 5.4e-50 203.4 260 49.2
Phvul.001G261701 Phaseolus vulgaris HOM05D003724 ORTHO05D004367 5.4e-50 203.4 265 48.3
Sopen05g010640 Solanum pennellii HOM05D003724 ORTHO05D004367 1.1e-47 195.7 106 92.5
COL.COLO4_20397 Corchorus olitorius HOM05D003724 ORTHO05D004367 1.6e-46 191.8 149 69.1
PSO832G0175 Papaver somniferum HOM05D003724 ORTHO05D004367 2.8e-46 191.0 119 78.2
BcaB03g15203 Brassica carinata HOM05D003724 ORTHO05D004367 1.4e-45 188.7 263 47.9
Cre10.g452550 Chlamydomonas reinhardtii HOM05D003724 ORTHO05D004367 5.1e-40 170.2 274 40.9
Solyc05g015360.2 Solanum lycopersicum HOM05D003724 ORTHO05D004367 1.1e-39 169.1 110 78.2
FAN12G4031 Fragaria x ananassa HOM05D003724 ORTHO05D004367 3.8e-35 154.1 162 54.3
Nitab4.5_0002119g0030 Nicotiana tabacum HOM05D003724 ORTHO05D004367 8.4e-35 152.9 107 71.0
Nitab4.5_0000767g0030 Nicotiana tabacum HOM05D003724 ORTHO05D004367 1.4e-34 152.1 198 45.5
GSVIVG01010478001 Vitis vinifera HOM05D003724 ORTHO05D004367 2.7e-33 147.9 75 100.0
RcHm_v2.0_Chr4g0430331 Rosa chinensis HOM05D003724 ORTHO05D004367 6.0e-33 146.7 75 100.0
Glyma.11G250351 Glycine max HOM05D003724 ORTHO05D004367 3.9e-32 144.1 81 91.4
FAN07G2055 Fragaria x ananassa HOM05D003724 ORTHO05D004367 7.3e-31 139.8 205 45.9
Hma1.2p1_0200F.1_g085970 Hydrangea macrophylla HOM05D003724 ORTHO05D004367 1.5e-28 132.1 319 33.5
SHI17966 Sapria himalayana HOM05D003724 ORTHO05D004367 2.0e-28 131.7 126 60.3
CSS0010492 Camellia sinensis var. sinensis HOM05D003724 ORTHO05D004367 5.8e-28 130.2 147 53.7
Lsat_1_v5_gn_3_110541 Lactuca sativa HOM05D003724 ORTHO05D004367 1.6e-25 122.1 128 53.1
AUR62027241 Chenopodium quinoa HOM05D003724 ORTHO05D009497 2.3e-24 118.2 346 33.2
Hma1.2p1_0053F.1_g030850 Hydrangea macrophylla HOM05D003724 ORTHO05D004367 7.3e-23 113.2 397 29.0
vmacro01061 Vaccinium macrocarpon HOM05D003724 ORTHO05D004367 2.1e-22 111.7 140 50.0
vmacro18929 Vaccinium macrocarpon HOM05D003724 ORTHO05D004367 6.2e-22 110.2 177 39.5
PSO170G3909 Papaver somniferum HOM05D003724 ORTHO05D004367 2.4e-21 108.2 159 45.9
Solyc05g015380.2 Solanum lycopersicum HOM05D003724 ORTHO05D004367 4.0e-21 107.5 156 46.8
Os01g0165800 Oryza sativa ssp. japonica HOM05D020709 ORTHO05D004367 9.0e-21 106.3 142 41.5
PRCOL_00002813 Prasinoderma coloniale HOM05D003724 ORTHO05D004367 1.3e-19 102.4 253 30.8
Sopen05g010670 Solanum pennellii HOM05D003724 ORTHO05D004367 2.9e-19 101.3 119 52.1
TPR.G40282 Trifolium pratense HOM05D003724 ORTHO05D004367 1.4e-18 99.0 141 45.4
PSO063G4593 Papaver somniferum HOM05D003724 ORTHO05D004367 7.9e-17 93.2 77 59.7
Lj3g0010411 Lotus japonicus HOM05D003724 ORTHO05D004367 5.8e-12 77.0 107 46.7
QL06p013707 Quercus lobata HOM05D003724 ORTHO05D000062 2.5e-07 61.6 38 89.5
QL10p034497 Quercus lobata HOM05D003724 ORTHO05D004367 7.4e-07 60.1 38 86.8
vmacro05008 Vaccinium macrocarpon HOM05D000208 ORTHO05D426771 9.6e-07 59.7 73 47.9
Zm00001eb247260 Zea mays HOM05D000069 ORTHO05D004367 4.8e-06 57.4 115 43.5


User provided reference genes

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