Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C010708.2 Cucumis melo HOM05D004549 ORTHO05D005390 6.1e-124 447.6 242 100.0
ClCG08G017510 Citrullus lanatus HOM05D004549 ORTHO05D005390 5.1e-102 374.8 215 95.3
CsaV3_2G025120 Cucumis sativus L. HOM05D004549 ORTHO05D005390 3.6e-100 368.6 203 98.0
Sed0013558 Sechium edule HOM05D004549 ORTHO05D005390 4.9e-89 331.6 201 88.6
Gohir.A01G156900 Gossypium hirsutum HOM05D004549 ORTHO05D005390 2.0e-74 283.1 203 76.4
Gohir.D01G153400 Gossypium hirsutum HOM05D004549 ORTHO05D005390 4.5e-74 282.0 203 75.9
Gorai.002G190000 Gossypium raimondii HOM05D004549 ORTHO05D005390 4.5e-74 282.0 203 75.9
COL.COLO4_23543 Corchorus olitorius HOM05D004549 ORTHO05D005390 9.9e-74 280.8 203 76.8
Duzib251G0883 Durio zibethinus HOM05D004549 ORTHO05D005390 1.9e-72 276.6 203 75.4
Duzib268G0224 Durio zibethinus HOM05D004549 ORTHO05D005390 3.2e-72 275.8 203 75.4
Manes.13G019200 Manihot esculenta HOM05D004549 ORTHO05D005390 7.1e-72 274.6 203 77.3
Thecc.02G268400 Theobroma cacao HOM05D004549 ORTHO05D005390 7.1e-72 274.6 203 76.4
Manes.12G018800 Manihot esculenta HOM05D004549 ORTHO05D005390 6.0e-71 271.6 203 75.4
QL03p055962 Quercus lobata HOM05D004549 ORTHO05D005390 7.9e-71 271.2 203 76.8
Nn4g22506 Nelumbo nucifera HOM05D004549 ORTHO05D005390 1.3e-70 270.4 203 73.4
TAR622G0384 Trochodendron aralioides HOM05D004549 ORTHO05D005390 1.8e-70 270.0 201 75.6
Potri.010G052000 Populus trichocarpa HOM05D004549 ORTHO05D005390 1.1e-69 267.3 203 74.9
TAR374G0110 Trochodendron aralioides HOM05D004549 ORTHO05D005390 1.9e-69 266.5 203 74.4
MBI11_g33737_MAGBIO Magnolia biondii HOM05D004549 ORTHO05D005390 4.8e-68 261.9 203 71.4
Potri.008G181900 Populus trichocarpa HOM05D004549 ORTHO05D005390 4.0e-67 258.8 196 75.0
TWI18G0700 Tripterygium wilfordii HOM05D004549 ORTHO05D005390 9.0e-67 257.7 205 72.7
Sabra08G0138600 Salix brachista HOM05D004549 ORTHO05D005390 1.2e-66 257.3 198 74.2
Cfa009269 Carpinus fangiana HOM05D004549 ORTHO05D005390 1.5e-66 256.9 203 74.9
Cpa.g.sc122.10 Carica papaya HOM05D004549 ORTHO05D005390 2.0e-66 256.5 202 73.8
Haze_12303 Corylus avellana HOM05D004549 ORTHO05D005390 1.0e-65 254.2 203 74.9
TWI36G1485 Tripterygium wilfordii HOM05D004549 ORTHO05D005390 6.5e-65 251.5 205 70.7
Oeu009692.1 Olea europaea HOM05D004549 ORTHO05D005390 2.5e-64 249.6 201 69.2
Prupe.1G239600 Prunus persica HOM05D004549 ORTHO05D005390 4.2e-64 248.8 203 71.9
Nitab4.5_0008037g0010 Nicotiana tabacum HOM05D004549 ORTHO05D005390 9.3e-64 247.7 202 72.8
arahy.Tifrunner.gnm1.ann1.J2LHWB Arachis hypogaea HOM05D004549 ORTHO05D005390 2.7e-63 246.1 206 69.9
MD16G1106800 Malus domestica HOM05D004549 ORTHO05D005390 2.7e-63 246.1 194 70.1
Psat7g059720 Pisum sativum HOM05D004549 ORTHO05D005390 2.7e-63 246.1 204 69.1
TPR.G6278 Trifolium pratense HOM05D004549 ORTHO05D005390 4.6e-63 245.4 205 70.2
Atru.chr11.2199 Acer truncatum HOM05D004549 ORTHO05D005390 7.9e-63 244.6 206 71.4
Aqoxy3G01353 Aquilegia oxysepala HOM05D004549 ORTHO05D005390 7.9e-63 244.6 196 70.9
Oeu004470.1 Olea europaea HOM05D004549 ORTHO05D005390 1.0e-62 244.2 202 68.8
Peaxi162Scf00128g00628 Petunia axillaris HOM05D004549 ORTHO05D005390 1.0e-62 244.2 203 70.9
Oeu059785.1 Olea europaea HOM05D004549 ORTHO05D005390 1.3e-62 243.8 203 69.5
PGR102G3304 Punica granatum HOM05D004549 ORTHO05D005390 1.3e-62 243.8 206 68.9
Cc11_g16230 Coffea canephora HOM05D004549 ORTHO05D005390 1.8e-62 243.4 198 69.7
MD13G1106700 Malus domestica HOM05D004549 ORTHO05D005390 2.3e-62 243.0 195 70.3
Hma1.2p1_0079F.1_g041330 Hydrangea macrophylla HOM05D004549 ORTHO05D005390 3.0e-62 242.7 209 68.9
Dinv11022 Davidia involucrata HOM05D004549 ORTHO05D005390 1.1e-61 240.7 203 69.0
Aqoxy5G03620 Aquilegia oxysepala HOM05D004549 ORTHO05D005390 1.5e-61 240.4 205 66.8
Ciclev10032789m.g Citrus clementina HOM05D004549 ORTHO05D005390 1.5e-61 240.4 207 70.5
Actinidia08109 Actinidia chinensis HOM05D004549 ORTHO05D005390 1.9e-61 240.0 204 70.6
CAN.G959.23 Capsicum annuum HOM05D004549 ORTHO05D005390 5.7e-61 238.4 206 68.9
Glyma.11G245400 Glycine max HOM05D004549 ORTHO05D005390 1.6e-60 236.9 207 69.1
CiPaw.11G070800 Carya illinoinensis HOM05D004549 ORTHO05D005390 4.8e-60 235.3 204 68.1
Rhsim12G0037700 Rhododendron simsii HOM05D004549 ORTHO05D005390 1.1e-59 234.2 204 66.2
Sopen10g028800 Solanum pennellii HOM05D004549 ORTHO05D005390 1.4e-59 233.8 202 68.3
EL10As2g23198 Beta vulgaris HOM05D004549 ORTHO05D005390 1.8e-59 233.4 207 65.2
Lj6g0014292 Lotus japonicus HOM05D004549 ORTHO05D005390 1.8e-59 233.4 209 66.5
PGSC0003DMG400007201 Solanum tuberosum HOM05D004549 ORTHO05D005390 2.4e-59 233.0 202 67.3
Ah.03g133600 Amaranthus hybridus HOM05D004549 ORTHO05D005390 4.1e-59 232.3 208 67.3
Medtr8g089610 Medicago truncatula HOM05D004549 ORTHO05D005390 4.1e-59 232.3 204 66.7
FAN17G2166 Fragaria x ananassa HOM05D004549 ORTHO05D005390 9.0e-59 231.1 207 66.7
FAN07G0129 Fragaria x ananassa HOM05D004549 ORTHO05D005390 1.5e-58 230.3 207 66.7
PSO478G3953 Papaver somniferum HOM05D004549 ORTHO05D005390 1.5e-58 230.3 207 65.2
Peaxi162Scf00797g00002 Petunia axillaris HOM05D004549 ORTHO05D005390 1.5e-58 230.3 205 69.8
PSO017G6717 Papaver somniferum HOM05D004549 ORTHO05D005390 2.6e-58 229.6 207 64.7
RcHm_v2.0_Chr4g0432261 Rosa chinensis HOM05D004549 ORTHO05D005390 2.6e-58 229.6 214 65.4
FvH4_4g25080 Fragaria vesca HOM05D004549 ORTHO05D005390 3.4e-58 229.2 208 65.9
FAN12G3122 Fragaria x ananassa HOM05D004549 ORTHO05D005390 3.4e-58 229.2 208 65.9
FAN22G0462 Fragaria x ananassa HOM05D004549 ORTHO05D005390 4.5e-58 228.8 207 65.7
FAN22G0861 Fragaria x ananassa HOM05D004549 ORTHO05D005390 4.5e-58 228.8 207 65.7
Eucgr.B03236 Eucalyptus grandis HOM05D004549 ORTHO05D005390 1.3e-57 227.3 204 66.2
Lalb_Chr07g0185571 Lupinus albus HOM05D004549 ORTHO05D005390 2.2e-57 226.5 202 64.9
Ca_17796_v3 Cicer arietinum L. HOM05D004549 ORTHO05D005390 6.5e-57 224.9 204 63.7
Duzib248G1249 Durio zibethinus HOM05D004549 ORTHO05D005390 1.9e-56 223.4 169 72.8
Lalb_Chr11g0075581 Lupinus albus HOM05D004549 ORTHO05D005390 2.5e-56 223.0 214 63.6
Lj6g0007818 Lotus japonicus HOM05D004549 ORTHO05D005390 3.2e-56 222.6 215 66.5
Lalb_Chr23g0277771 Lupinus albus HOM05D004549 ORTHO05D005390 4.2e-56 222.2 213 64.3
CSS0012497 Camellia sinensis var. sinensis HOM05D004549 ORTHO05D005390 7.2e-56 221.5 211 65.4
MSTRG.13333 Avicennia marina HOM05D004549 ORTHO05D005390 2.1e-55 219.9 206 63.6
VMungo0251G3559 Vigna mungo HOM05D004549 ORTHO05D005390 2.7e-55 219.5 204 67.2
TWI75G1071 Tripterygium wilfordii HOM05D004549 ORTHO05D005390 1.0e-54 217.6 202 64.4
CANSAT01G2573 Cannabis sativa HOM05D004549 ORTHO05D005390 3.0e-54 216.1 215 60.9
VMungo1383G1841 Vigna mungo HOM05D004549 ORTHO05D005390 3.9e-54 215.7 205 63.4
Phvul.001G257100 Phaseolus vulgaris HOM05D004549 ORTHO05D005390 1.5e-53 213.8 205 64.4
Sed0000703 Sechium edule HOM05D004549 ORTHO05D005390 1.9e-53 213.4 232 57.3
SGA_v2.0_scaffold391G50640 Striga asiatica HOM05D002973 ORTHO05D003383 3.3e-53 212.6 201 62.7
Phvul.002G253700 Phaseolus vulgaris HOM05D004549 ORTHO05D005390 5.7e-53 211.8 204 65.2
Ah.02g130410 Amaranthus hybridus HOM05D004549 ORTHO05D005390 1.3e-52 210.7 208 64.4
Ca_25121_v3 Cicer arietinum L. HOM05D004549 ORTHO05D005390 3.7e-52 209.1 207 64.3
Glyma.05G172300 Glycine max HOM05D004549 ORTHO05D005390 6.3e-52 208.4 203 65.0
MELO3C011911.2 Cucumis melo HOM05D004549 ORTHO05D005390 8.2e-52 208.0 204 63.7
SGA_v2.0_scaffold87G27112 Striga asiatica HOM05D004549 ORTHO05D005390 8.2e-52 208.0 204 61.8
Migut.E00226 Erythranthe guttata HOM05D004549 ORTHO05D005390 1.8e-51 206.8 202 62.4
Psat5g094200 Pisum sativum HOM05D004549 ORTHO05D005390 2.4e-51 206.5 209 63.2
Glyma.18G011800 Glycine max HOM05D004549 ORTHO05D005390 9.0e-51 204.5 208 61.5
Medtr3g086230 Medicago truncatula HOM05D004549 ORTHO05D005390 9.0e-51 204.5 206 62.6
CsaV3_5G030690 Cucumis sativus L. HOM05D004549 ORTHO05D005354 1.5e-50 203.8 202 62.4
A02p14440 Brassica napus HOM05D004549 ORTHO05D005390 1.7e-49 200.3 213 58.7
HanXRQChr17g0540101 Helianthus annuus HOM05D004549 ORTHO05D005390 2.2e-49 199.9 206 59.7
Sc11g0000800 Simmondsia chinensis HOM05D004549 ORTHO05D005390 3.8e-49 199.1 204 60.8
CDE08G0789 Ceratophyllum demersum HOM05D004549 ORTHO05D005390 8.5e-49 198.0 199 61.8
C06p38460 Brassica napus HOM05D004549 ORTHO05D005390 1.1e-48 197.6 214 58.9
BolC6t38943H Brassica oleracea HOM05D004549 ORTHO05D005390 1.1e-48 197.6 214 58.9
THA.LOC104807755 Tarenaya hassleriana HOM05D004549 ORTHO05D005390 1.1e-48 197.6 206 60.2
BcaC03g14868 Brassica carinata HOM05D004549 ORTHO05D005390 2.5e-48 196.4 213 57.7
C02p23390 Brassica napus HOM05D004549 ORTHO05D005390 2.5e-48 196.4 213 57.7
BolC2t08472H Brassica oleracea HOM05D004549 ORTHO05D005390 2.5e-48 196.4 213 57.7
BraA02t06507Z Brassica rapa HOM05D004549 ORTHO05D005390 3.2e-48 196.1 213 57.7
CDE06G0408 Ceratophyllum demersum HOM05D004549 ORTHO05D005390 5.5e-48 195.3 205 59.5
BcaB05g24311 Brassica carinata HOM05D004549 ORTHO05D005390 7.2e-48 194.9 216 56.0
Lsat_1_v5_gn_3_29100 Lactuca sativa HOM05D004549 ORTHO05D005390 7.2e-48 194.9 203 59.1
BcaB03g15371 Brassica carinata HOM05D004549 ORTHO05D005390 9.4e-48 194.5 216 57.9
SalBow8G0177 Salvia bowleyana HOM05D004549 ORTHO05D005390 2.1e-47 193.4 205 60.5
CARHR060320 Cardamine hirsuta HOM05D004549 ORTHO05D005390 2.7e-47 193.0 178 61.8
ATR0824G259 Amborella trichopoda HOM05D004549 ORTHO05D005390 4.6e-47 192.2 196 60.2
Thhalv10019165m.g Eutrema salsugineum HOM05D004549 ORTHO05D005390 6.1e-47 191.8 215 57.2
Sp5g22750 Schrenkiella parvula HOM05D004549 ORTHO05D005390 1.8e-46 190.3 211 57.3
A07p32430 Brassica napus HOM05D004549 ORTHO05D005390 3.0e-46 189.5 214 57.5
BraA07t30866Z Brassica rapa HOM05D004549 ORTHO05D005390 3.0e-46 189.5 214 57.5
unitig_62.g23660 Utricularia gibba HOM05D004549 ORTHO05D005390 3.9e-46 189.1 204 58.8
AUR62005536 Chenopodium quinoa HOM05D004549 ORTHO05D005390 5.1e-46 188.7 207 58.0
AUR62024202 Chenopodium quinoa HOM05D004549 ORTHO05D005390 1.1e-45 187.6 208 56.7
ECA246G5237 Erigeron canadensis HOM05D004549 ORTHO05D005390 1.5e-45 187.2 206 57.3
CSS0014809 Camellia sinensis var. sinensis HOM05D004549 ORTHO05D005390 3.3e-45 186.0 166 65.1
Aa31LG4G12260 Aethionema arabicum HOM05D004549 ORTHO05D005390 5.7e-45 185.3 206 56.8
BcaC08g46043 Brassica carinata HOM05D004549 ORTHO05D005390 7.4e-45 184.9 202 56.4
unitig_744.g24296 Utricularia gibba HOM05D004549 ORTHO05D005390 1.7e-44 183.7 206 58.3
A07p34290 Brassica napus HOM05D004549 ORTHO05D005390 8.2e-44 181.4 210 54.8
BraA07t31058Z Brassica rapa HOM05D004549 ORTHO05D005390 1.4e-43 180.6 210 54.3
C06p42290 Brassica napus HOM05D004549 ORTHO05D005390 3.1e-43 179.5 210 54.3
BolC6t39200H Brassica oleracea HOM05D004549 ORTHO05D005390 4.1e-43 179.1 212 54.2
BcaB03g15168 Brassica carinata HOM05D004549 ORTHO05D005390 3.4e-42 176.0 210 54.8
BcaC08g46197 Brassica carinata HOM05D004549 ORTHO05D005390 7.7e-42 174.9 210 54.3
CDE09G1301 Ceratophyllum demersum HOM05D004549 ORTHO05D005390 7.2e-40 168.3 199 52.3
HPP92_017052 Vanilla planifolia HOM05D004549 ORTHO05D005390 1.4e-38 164.1 202 50.0
Ciclev10022422m.g Citrus clementina HOM05D004549 ORTHO05D005390 5.1e-38 162.2 180 56.1
Mapoly0083s0047 Marchantia polymorpha HOM05D004549 ORTHO05D005390 2.6e-37 159.8 167 56.3
AL2G26440 Arabidopsis lyrata HOM05D004549 ORTHO05D005390 2.2e-36 156.8 205 50.2
Carub.0002s1417 Capsella rubella HOM05D004549 ORTHO05D005390 8.2e-36 154.8 205 50.2
SEGI_41357 Sequoiadendron giganteum HOM05D004549 ORTHO05D005390 3.1e-35 152.9 155 55.5
AT1G67740 Arabidopsis thaliana HOM05D004549 ORTHO05D005390 3.5e-34 149.4 205 47.8
Os08g0119800 Oryza sativa ssp. japonica HOM05D004549 ORTHO05D005390 2.2e-33 146.7 113 67.3
TPR.G35846 Trifolium pratense HOM05D004549 ORTHO05D005390 5.0e-33 145.6 182 56.6
Nn3g16614 Nelumbo nucifera HOM05D004549 ORTHO05D005390 8.0e-31 138.3 123 67.5
Pp3c23_21280 Physcomitrium patens HOM05D004549 ORTHO05D005390 2.3e-30 136.7 143 53.1
Pp3c24_20010 Physcomitrium patens HOM05D004549 ORTHO05D005390 1.1e-29 134.4 170 45.3
AagrBONN_evm.TU.Sc2ySwM_117.3039 Anthoceros agrestis HOM05D004985 ORTHO05D005912 9.7e-29 131.3 222 42.8
CBR_g38912 Chara braunii HOM05D004549 ORTHO05D005390 6.3e-28 128.6 139 51.8
Pp3c8_24120 Physcomitrium patens HOM05D004549 ORTHO05D005390 8.2e-28 128.3 246 35.8
Prupe.5G159900 Prunus persica HOM05D004549 ORTHO05D005390 4.5e-26 122.5 131 58.0
SMO137G0014 Selaginella moellendorffii HOM05D004549 ORTHO05D005390 1.7e-25 120.6 160 48.8
RcHm_v2.0_Chr7g0191491 Rosa chinensis HOM05D004549 ORTHO05D005390 6.8e-22 108.6 133 51.1
Medtr2g046810 Medicago truncatula HOM05D004549 ORTHO05D005390 4.4e-21 105.9 156 52.6
Sc04g0001060 Simmondsia chinensis HOM05D004549 ORTHO05D005390 5.7e-21 105.5 133 51.1
FAN18G0098 Fragaria x ananassa HOM05D004549 ORTHO05D005390 4.8e-20 102.4 133 49.6
Zm00001eb261260 Zea mays HOM05D004549 ORTHO05D005390 8.3e-20 101.7 158 44.9
unitig_52.g17185 Utricularia gibba HOM05D004549 ORTHO05D005390 7.0e-19 98.6 78 69.2
Ah.08g218300 Amaranthus hybridus HOM05D004549 ORTHO05D005390 3.5e-18 96.3 153 43.1
Zm00001eb173510 Zea mays HOM05D004549 ORTHO05D005390 4.5e-18 95.9 138 44.9
AUR62001261 Chenopodium quinoa HOM05D004549 ORTHO05D005390 1.3e-17 94.4 103 53.4
FAN08G1783 Fragaria x ananassa HOM05D004549 ORTHO05D005390 2.1e-15 87.0 100 52.0
Solyc10g077120.3 Solanum lycopersicum HOM05D004549 ORTHO05D005390 1.8e-14 84.0 89 60.7
PRCOL_00004421 Prasinoderma coloniale HOM05D004549 ORTHO05D005390 3.0e-14 83.2 124 43.5
MCO16G101 Micromonas commoda HOM05D004549 ORTHO05D005390 5.6e-08 62.4 115 36.5


User provided reference genes

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