Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C009839.2 Cucumis melo HOM05D004116 ORTHO05D004734 0.0e+00 2037.3 1044 100.0
CsaV3_3G041070 Cucumis sativus L. HOM05D004116 ORTHO05D004734 0.0e+00 2005.7 1045 98.8
ClCG10G015430 Citrullus lanatus HOM05D004116 ORTHO05D004734 0.0e+00 1967.6 1044 96.5
Sed0005067 Sechium edule HOM05D004116 ORTHO05D004734 0.0e+00 1828.5 1044 90.7
Haze_14475 Corylus avellana HOM05D004116 ORTHO05D004734 0.0e+00 1733.4 1050 84.7
Prupe.3G259400 Prunus persica HOM05D004116 ORTHO05D004734 0.0e+00 1710.3 1044 84.1
MD17G1056200 Malus domestica HOM05D004116 ORTHO05D004734 0.0e+00 1701.0 1044 84.2
QL02p039609 Quercus lobata HOM05D004116 ORTHO05D004734 0.0e+00 1700.3 1039 84.3
Dinv11490 Davidia involucrata HOM05D004116 ORTHO05D004734 0.0e+00 1699.9 1048 83.5
QL02p039361 Quercus lobata HOM05D004116 ORTHO05D004734 0.0e+00 1699.9 1039 84.3
Dinv33806 Davidia involucrata HOM05D004116 ORTHO05D004734 0.0e+00 1692.2 1041 83.1
Gorai.006G012900 Gossypium raimondii HOM05D004116 ORTHO05D004734 0.0e+00 1690.2 1061 81.6
Gohir.D09G011100 Gossypium hirsutum HOM05D004116 ORTHO05D004734 0.0e+00 1687.2 1061 81.5
GSVIVG01011484001 Vitis vinifera HOM05D004116 ORTHO05D004734 0.0e+00 1678.3 1048 82.5
PGR004G0109 Punica granatum HOM05D004116 ORTHO05D004734 0.0e+00 1675.6 1047 81.8
CiPaw.03G091800 Carya illinoinensis HOM05D004116 ORTHO05D004734 0.0e+00 1671.0 1049 82.5
TAR629G1084 Trochodendron aralioides HOM05D004116 ORTHO05D004734 0.0e+00 1667.5 1049 81.6
Hma1.2p1_0037F.1_g023840 Hydrangea macrophylla HOM05D004116 ORTHO05D004734 0.0e+00 1667.1 1045 82.5
Manes.01G099400 Manihot esculenta HOM05D004116 ORTHO05D004734 0.0e+00 1666.7 1043 81.3
Duzib264G1228 Durio zibethinus HOM05D004116 ORTHO05D004734 0.0e+00 1664.8 1056 81.0
vmacro18164 Vaccinium macrocarpon HOM05D004116 ORTHO05D004734 0.0e+00 1663.7 1017 83.3
Lj4C115G25 Lonicera japonica HOM05D004116 ORTHO05D004734 0.0e+00 1663.3 1050 81.6
Actinidia26244 Actinidia chinensis HOM05D004116 ORTHO05D004734 0.0e+00 1661.7 1020 82.8
MD09G1060800 Malus domestica HOM05D004116 ORTHO05D004734 0.0e+00 1658.3 1063 81.6
CAN.G206.195 Capsicum annuum HOM05D004116 ORTHO05D004734 0.0e+00 1657.5 1047 81.1
TWI60G1537 Tripterygium wilfordii HOM05D004116 ORTHO05D004734 0.0e+00 1657.5 1049 80.9
Thecc.04G090300 Theobroma cacao HOM05D004116 ORTHO05D004734 0.0e+00 1657.1 1055 80.9
Ciclev10010958m.g Citrus clementina HOM05D004116 ORTHO05D004734 0.0e+00 1652.9 1055 80.6
Sopen02g033270 Solanum pennellii HOM05D004116 ORTHO05D004734 0.0e+00 1649.8 1047 80.4
Atru.chr8.371 Acer truncatum HOM05D004116 ORTHO05D004734 0.0e+00 1647.1 1049 80.4
arahy.Tifrunner.gnm1.ann1.M1DWNQ Arachis hypogaea HOM05D004116 ORTHO05D004734 0.0e+00 1645.9 1064 79.7
Duzib147G0424 Durio zibethinus HOM05D004116 ORTHO05D004734 0.0e+00 1644.0 1053 80.0
PGSC0003DMG400001440 Solanum tuberosum HOM05D004116 ORTHO05D004734 0.0e+00 1642.5 1047 80.3
Cc07_g03830 Coffea canephora HOM05D004116 ORTHO05D004734 0.0e+00 1641.3 1048 80.2
TWI34G1118 Tripterygium wilfordii HOM05D004116 ORTHO05D004734 0.0e+00 1640.9 1050 80.0
MSTRG.23904 Avicennia marina HOM05D004116 ORTHO05D004734 0.0e+00 1637.1 1047 79.3
Cfa007620 Carpinus fangiana HOM05D004116 ORTHO05D004734 0.0e+00 1637.1 1050 81.0
Oeu045355.1 Olea europaea HOM05D004116 ORTHO05D004734 0.0e+00 1635.2 1040 80.1
VMungo0464G1725 Vigna mungo HOM05D004116 ORTHO05D004734 0.0e+00 1633.6 1052 79.7
Glyma.19G027200 Glycine max HOM05D004116 ORTHO05D004734 0.0e+00 1633.2 1048 79.9
Sc10g0003320 Simmondsia chinensis HOM05D004116 ORTHO05D004734 0.0e+00 1632.5 1056 79.9
DCAR_011063 Daucus carota HOM05D004116 ORTHO05D004734 0.0e+00 1630.2 1046 79.6
Nitab4.5_0000565g0080 Nicotiana tabacum HOM05D004116 ORTHO05D004734 0.0e+00 1629.8 1081 78.0
Lalb_Chr21g0318471 Lupinus albus HOM05D004116 ORTHO05D004734 0.0e+00 1627.8 1050 78.9
CSS0030715 Camellia sinensis var. sinensis HOM05D004116 ORTHO05D004734 0.0e+00 1627.1 1019 81.4
Glyma.13G059200 Glycine max HOM05D004116 ORTHO05D004734 0.0e+00 1626.3 1051 79.7
Phvul.004G033100 Phaseolus vulgaris HOM05D004116 ORTHO05D004734 0.0e+00 1625.9 1052 79.3
Eucgr.I01989 Eucalyptus grandis HOM05D004116 ORTHO05D004734 0.0e+00 1621.7 1046 79.5
SGA_v2.0_scaffold4G02415 Striga asiatica HOM05D004116 ORTHO05D004734 0.0e+00 1620.9 1047 78.9
Rhsim08G0073200 Rhododendron simsii HOM05D004116 ORTHO05D004734 0.0e+00 1616.3 1067 78.6
COL.COLO4_07430 Corchorus olitorius HOM05D004116 ORTHO05D004734 0.0e+00 1615.1 1054 79.0
TPR.G26216 Trifolium pratense HOM05D004116 ORTHO05D004734 0.0e+00 1611.3 1053 78.2
Lj2g0025037 Lotus japonicus HOM05D004116 ORTHO05D004734 0.0e+00 1610.1 1053 78.5
Potri.017G089600 Populus trichocarpa HOM05D004116 ORTHO05D004734 0.0e+00 1607.0 1045 78.6
CANSAT64G2358 Cannabis sativa HOM05D004116 ORTHO05D004734 0.0e+00 1604.7 1044 78.6
Lju41A7G39 Lonicera japonica HOM05D004116 ORTHO05D004734 0.0e+00 1604.0 1062 78.8
Migut.H00657 Erythranthe guttata HOM05D004116 ORTHO05D004734 0.0e+00 1602.0 1047 77.6
RcHm_v2.0_Chr2g0166651 Rosa chinensis HOM05D004116 ORTHO05D004734 0.0e+00 1602.0 1050 79.0
Peaxi162Scf00166g00825 Petunia axillaris HOM05D004116 ORTHO05D004734 0.0e+00 1601.6 1048 78.2
Ca_04866_v3 Cicer arietinum L. HOM05D004116 ORTHO05D004734 0.0e+00 1598.9 1047 78.4
THA.LOC104822346 Tarenaya hassleriana HOM05D004116 ORTHO05D004734 0.0e+00 1598.6 1023 78.6
Gohir.A09G012200 Gossypium hirsutum HOM05D004116 ORTHO05D004734 0.0e+00 1595.1 1055 78.1
SGA_v2.0_scaffold413G51160 Striga asiatica HOM05D004116 ORTHO05D004734 0.0e+00 1595.1 1045 77.4
Potri.004G121200 Populus trichocarpa HOM05D004116 ORTHO05D004734 0.0e+00 1592.8 1045 78.0
Aa31LG11G14160 Aethionema arabicum HOM05D004116 ORTHO05D004734 0.0e+00 1585.5 1052 76.9
arahy.Tifrunner.gnm1.ann1.JWLU7F Arachis hypogaea HOM05D004116 ORTHO05D004734 0.0e+00 1579.7 1053 77.7
AT5G15400 Arabidopsis thaliana HOM05D004116 ORTHO05D004734 0.0e+00 1578.1 1052 76.0
Nitab4.5_0008573g0070 Nicotiana tabacum HOM05D004116 ORTHO05D004734 0.0e+00 1576.2 1083 76.2
BraA02t05272Z Brassica rapa HOM05D004116 ORTHO05D004734 0.0e+00 1575.1 1053 75.6
Carub.0006s1357 Capsella rubella HOM05D004116 ORTHO05D004734 0.0e+00 1575.1 1052 75.6
Medtr6g013690 Medicago truncatula HOM05D004116 ORTHO05D004734 0.0e+00 1573.5 1058 76.9
AL6G26260 Arabidopsis lyrata HOM05D004116 ORTHO05D004734 0.0e+00 1573.1 1053 75.7
FAN09G3106 Fragaria x ananassa HOM05D004116 ORTHO05D004734 0.0e+00 1572.8 1054 78.8
A02p03010 Brassica napus HOM05D004116 ORTHO05D004734 0.0e+00 1571.2 1057 75.7
CARHR197910 Cardamine hirsuta HOM05D004116 ORTHO05D004734 0.0e+00 1566.6 1051 76.0
Sp6g28690 Schrenkiella parvula HOM05D004116 ORTHO05D004734 0.0e+00 1565.8 1052 75.6
FAN14G3940 Fragaria x ananassa HOM05D004116 ORTHO05D004734 0.0e+00 1565.4 1054 78.7
FvH4_6g47550 Fragaria vesca HOM05D004116 ORTHO05D004734 0.0e+00 1563.9 1054 78.7
Nn4g23336 Nelumbo nucifera HOM05D004116 ORTHO05D004734 0.0e+00 1563.1 1030 78.2
Thhalv10012542m.g Eutrema salsugineum HOM05D004116 ORTHO05D004734 0.0e+00 1560.8 1052 75.6
Sabra17G0078900 Salix brachista HOM05D004116 ORTHO05D004734 0.0e+00 1560.4 1062 75.5
A10p23490 Brassica napus HOM05D004116 ORTHO05D004734 0.0e+00 1558.1 1055 74.8
BraA10t44416Z Brassica rapa HOM05D004116 ORTHO05D004734 0.0e+00 1558.1 1055 74.8
C02p07680 Brassica napus HOM05D004116 ORTHO05D004734 0.0e+00 1557.7 1060 74.6
HanXRQChr09g0264141 Helianthus annuus HOM05D004116 ORTHO05D004734 0.0e+00 1556.6 1046 76.5
Lsat_1_v5_gn_4_170201 Lactuca sativa HOM05D004116 ORTHO05D004734 0.0e+00 1556.6 1045 76.4
C09p61720 Brassica napus HOM05D004116 ORTHO05D004734 0.0e+00 1555.8 1052 75.3
BolC2t06699H Brassica oleracea HOM05D004116 ORTHO05D004734 0.0e+00 1555.8 1060 74.5
HanXRQChr15g0488441 Helianthus annuus HOM05D004116 ORTHO05D004734 0.0e+00 1552.3 1039 76.6
FAN02G1010 Fragaria x ananassa HOM05D004116 ORTHO05D004734 0.0e+00 1548.9 1095 75.3
BolC9t59011H Brassica oleracea HOM05D004116 ORTHO05D004734 0.0e+00 1548.1 1052 75.0
PGSC0003DMG400007132 Solanum tuberosum HOM05D004116 ORTHO05D004734 0.0e+00 1543.9 1023 77.0
FAN05G0837 Fragaria x ananassa HOM05D004116 ORTHO05D004734 0.0e+00 1543.5 1094 75.5
BcaC03g13414 Brassica carinata HOM05D004116 ORTHO05D004734 0.0e+00 1535.8 1060 74.0
PSO063G3309 Papaver somniferum HOM05D004116 ORTHO05D004734 0.0e+00 1530.4 1045 74.7
PSO013G0369 Papaver somniferum HOM05D004116 ORTHO05D004734 0.0e+00 1523.8 1047 74.4
EL10Ac2g03047 Beta vulgaris HOM05D004116 ORTHO05D004734 0.0e+00 1516.9 1151 69.3
MBI19_g32361_MAGBIO Magnolia biondii HOM05D004116 ORTHO05D004734 0.0e+00 1492.6 1056 73.3
Aqoxy3G03559 Aquilegia oxysepala HOM05D004116 ORTHO05D004734 0.0e+00 1490.3 1020 74.8
Sopen06g031210 Solanum pennellii HOM05D004116 ORTHO05D004734 0.0e+00 1487.2 1024 73.8
Cpa.g.sc14.139 Carica papaya HOM05D004116 ORTHO05D004734 0.0e+00 1437.9 1049 73.5
Aqoxy3G01362 Aquilegia oxysepala HOM05D004116 ORTHO05D004734 0.0e+00 1429.1 1022 71.7
AUR62018140 Chenopodium quinoa HOM05D004116 ORTHO05D004734 0.0e+00 1404.8 1046 71.5
unitig_744.g24002 Utricularia gibba HOM05D004116 ORTHO05D004734 0.0e+00 1375.5 1047 69.4
ECA232G0495 Erigeron canadensis HOM05D004116 ORTHO05D004734 0.0e+00 1368.6 938 75.4
Solyc06g074770.4 Solanum lycopersicum HOM05D004116 ORTHO05D004734 0.0e+00 1360.9 960 72.2
SHI16441 Sapria himalayana HOM05D004116 ORTHO05D004734 0.0e+00 1340.5 1040 67.8
HPP92_023626 Vanilla planifolia HOM05D004116 ORTHO05D004734 0.0e+00 1338.2 964 70.5
RcHm_v2.0_Chr5g0047221 Rosa chinensis HOM05D004116 ORTHO05D004734 0.0e+00 1331.2 1013 69.9
AUR62034478 Chenopodium quinoa HOM05D004116 ORTHO05D004734 0.0e+00 1327.8 1022 69.2
Os03g0427900 Oryza sativa ssp. japonica HOM05D004116 ORTHO05D004734 0.0e+00 1297.3 1023 65.3
ATR0111G012 Amborella trichopoda HOM05D004116 ORTHO05D004734 0.0e+00 1234.2 817 76.1
Mapoly0052s0078 Marchantia polymorpha HOM05D004116 ORTHO05D004734 0.0e+00 1131.3 1022 57.8
AagrBONN_evm.TU.Sc2ySwM_340.219 Anthoceros agrestis HOM05D004116 ORTHO05D004734 0.0e+00 1107.8 1018 58.8
Ah.12g062550 Amaranthus hybridus HOM05D004116 ORTHO05D004734 0.0e+00 1099.7 760 76.1
Pp3c15_20630 Physcomitrium patens HOM05D004116 ORTHO05D004734 1.1e-310 1070.1 1031 55.4
SMO356G0406 Selaginella moellendorffii HOM05D004116 ORTHO05D004734 2.3e-308 1062.4 1025 54.7
Zm00001eb393280 Zea mays HOM05D004116 ORTHO05D004734 1.3e-295 1020.0 711 71.7
Hma1.2p1_0604F.1_g187770 Hydrangea macrophylla HOM05D004116 ORTHO05D004734 3.2e-294 1015.4 621 85.2
FAN11G2920 Fragaria x ananassa HOM05D004116 ORTHO05D004734 7.1e-294 1014.2 1014 56.7
Zm00001eb020370 Zea mays HOM05D004116 ORTHO05D004734 3.5e-293 1011.9 711 71.7
FAN25G2854 Fragaria x ananassa HOM05D004116 ORTHO05D004734 4.8e-274 948.3 966 56.8
CDE04G3780 Ceratophyllum demersum HOM05D004116 ORTHO05D004734 7.1e-270 934.5 619 76.7
PSO144G0086 Papaver somniferum HOM05D004116 ORTHO05D004734 9.3e-270 934.1 1037 51.5
PSO170G0544 Papaver somniferum HOM05D004116 ORTHO05D004734 9.0e-265 917.5 1042 51.4
PSO325G0009 Papaver somniferum HOM05D004116 ORTHO05D004734 8.5e-263 911.0 1030 51.4
Aqoxy3G00661 Aquilegia oxysepala HOM05D004116 ORTHO05D004734 1.8e-244 850.1 552 78.1
Psat1g069120 Pisum sativum HOM05D004116 ORTHO05D004734 1.1e-241 840.9 480 88.8
Solyc02g088550.4 Solanum lycopersicum HOM05D004116 ORTHO05D004734 4.0e-220 769.2 448 87.9
PSO017G4845 Papaver somniferum HOM05D004116 ORTHO05D004734 2.4e-209 733.4 1030 44.9
FvH4_3g25920 Fragaria vesca HOM05D004116 ORTHO05D004734 1.9e-193 680.6 437 78.7
CDE07G1255 Ceratophyllum demersum HOM05D006464 ORTHO05D007923 9.9e-187 658.3 399 80.7
PSO144G0082 Papaver somniferum HOM05D004116 ORTHO05D004734 1.7e-183 647.5 1019 40.9
BcaC04g24243 Brassica carinata HOM05D004116 ORTHO05D004734 1.5e-179 634.4 387 83.7
FAN16G3124 Fragaria x ananassa HOM05D004116 ORTHO05D004734 8.4e-178 628.6 481 68.6
CBR_g12108 Chara braunii HOM05D004116 ORTHO05D004734 3.1e-172 610.1 511 60.5
Psat1g069040 Pisum sativum HOM05D004116 ORTHO05D004734 1.3e-170 604.7 455 67.9
PRCOL_00002499 Prasinoderma coloniale HOM05D004116 ORTHO05D004734 7.9e-168 595.5 1046 36.8
Aqoxy3G00662 Aquilegia oxysepala HOM05D004116 ORTHO05D004734 6.7e-151 539.3 415 65.1
FAN17G0761 Fragaria x ananassa HOM05D004116 ORTHO05D004734 3.6e-144 516.9 373 71.0
FAN09G1300 Fragaria x ananassa HOM05D004116 ORTHO05D004734 3.3e-142 510.4 367 70.8
FAN09G4205 Fragaria x ananassa HOM05D004116 ORTHO05D004734 3.3e-142 510.4 367 70.8
FAN21G0296 Fragaria x ananassa HOM05D004116 ORTHO05D004734 1.3e-138 498.4 372 71.2
BcaNung03312 Brassica carinata HOM05D004116 ORTHO05D004734 2.9e-138 497.3 507 55.8
FvH4_3g25930 Fragaria vesca HOM05D004116 ORTHO05D004734 2.7e-136 490.7 568 51.6
SEGI_13711 Sequoiadendron giganteum HOM05D004116 ORTHO05D004734 6.7e-135 486.1 322 74.8
PSO384G2573 Papaver somniferum HOM05D004116 ORTHO05D004734 1.5e-126 458.4 586 46.8
Cre09.g398350 Chlamydomonas reinhardtii HOM05D004116 ORTHO05D004734 1.1e-124 452.2 1096 31.8
PSO761G0054 Papaver somniferum HOM05D004116 ORTHO05D004734 1.2e-120 438.7 667 41.4
QL02p039616 Quercus lobata HOM05D004116 ORTHO05D004734 4.2e-113 413.7 279 75.6
Ah.12g062560 Amaranthus hybridus HOM05D004116 ORTHO05D004734 7.2e-105 386.3 290 64.5
Lsat_1_v5_gn_8_41201 Lactuca sativa HOM05D004116 ORTHO05D004734 3.9e-90 337.4 195 85.6
FAN12G4053 Fragaria x ananassa HOM05D004116 ORTHO05D004734 9.5e-89 332.8 514 43.2
Actinidia17574 Actinidia chinensis HOM05D004116 ORTHO05D004734 2.4e-84 318.2 283 59.7
CBR_g12111 Chara braunii HOM05D004116 ORTHO05D004734 1.4e-79 302.4 508 37.8
Lsat_1_v5_gn_8_41221 Lactuca sativa HOM05D004116 ORTHO05D004734 9.2e-76 289.7 400 45.2
PSO478G4129 Papaver somniferum HOM05D004116 ORTHO05D004734 8.6e-74 283.1 418 45.0
Hma1.2p1_1813F.1_g303850 Hydrangea macrophylla HOM05D004116 ORTHO05D004734 6.8e-71 273.5 185 76.8
FAN21G1378 Fragaria x ananassa HOM05D004116 ORTHO05D004734 9.6e-65 253.1 233 59.2
Actinidia17575 Actinidia chinensis HOM05D004116 ORTHO05D004734 9.9e-62 243.0 135 86.7
FAN21G1132 Fragaria x ananassa HOM05D004116 ORTHO05D004734 5.4e-60 237.3 305 48.2
FAN16G0481 Fragaria x ananassa HOM05D004116 ORTHO05D004734 1.7e-58 232.3 226 58.0
Lsat_1_v5_gn_0_45261 Lactuca sativa HOM05D004116 ORTHO05D004734 2.7e-51 208.4 162 70.4
Actinidia17576 Actinidia chinensis HOM05D000100 ORTHO05D004702 8.1e-48 196.8 128 78.9
Oeu034757.1 Olea europaea HOM05D004116 ORTHO05D004734 5.3e-47 194.1 133 67.7
Psat1g069080 Pisum sativum HOM05D004116 ORTHO05D004734 5.8e-46 190.7 364 39.0
MCO05G368 Micromonas commoda HOM05D004116 ORTHO05D004734 4.6e-43 181.0 191 48.2
PSO675G1667 Papaver somniferum HOM05D004116 ORTHO05D004734 1.2e-35 156.4 176 52.8
FAN16G0041 Fragaria x ananassa HOM05D004116 ORTHO05D004734 1.6e-35 156.0 123 67.5
TAR622G0429 Trochodendron aralioides HOM05D004116 ORTHO05D004734 9.7e-33 146.7 253 40.7
SalBow6G1256 Salvia bowleyana HOM05D003831 ORTHO05D004440 2.2e-32 145.6 207 44.0
CDE04G3166 Ceratophyllum demersum HOM05D006464 ORTHO05D007923 1.6e-27 129.4 91 67.0
AL1G40200 Arabidopsis lyrata HOM05D004116 ORTHO05D004734 8.2e-24 117.1 88 63.6
CAN.G111.24 Capsicum annuum HOM05D004116 ORTHO05D004734 3.1e-23 115.2 265 32.8
MBI19_g01203_MAGBIO Magnolia biondii HOM05D001745 ORTHO05D001772 2.9e-13 82.0 62 64.5
Cre12.g519150 Chlamydomonas reinhardtii HOM05D004874 ORTHO05D006796 1.4e-12 79.7 72 50.0
Hund13173 Selenicereus undatus HOM05D000214 ORTHO05D000131 1.6e-11 76.3 55 72.7
Lsat_1_v5_gn_1_20041 Lactuca sativa HOM05D004116 ORTHO05D004734 1.4e-10 73.2 72 52.8
Lsat_1_v5_gn_8_37500 Lactuca sativa HOM05D003233 ORTHO05D003694 3.9e-10 71.6 49 67.3
MCO16G187 Micromonas commoda HOM05D004874 ORTHO05D006796 1.5e-09 69.7 109 39.4


User provided reference genes

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