Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C009712.2 Cucumis melo HOM05D005933 ORTHO05D007366 1.5e-267 925.6 471 100.0
CsaV3_3G039700 Cucumis sativus L. HOM05D005933 ORTHO05D007366 1.3e-247 859.4 473 93.4
ClCG10G016640 Citrullus lanatus HOM05D005933 ORTHO05D007366 9.2e-233 810.1 519 83.0
Sed0001053 Sechium edule HOM05D005933 ORTHO05D007366 1.6e-200 703.0 482 78.8
Haze_19854 Corylus avellana HOM05D005933 ORTHO05D007366 2.5e-161 572.8 462 65.2
CiPaw.08G166600 Carya illinoinensis HOM05D005933 ORTHO05D007366 4.3e-158 562.0 478 63.4
Ciclev10004945m.g Citrus clementina HOM05D005933 ORTHO05D007366 1.5e-155 553.5 478 61.1
RcHm_v2.0_Chr3g0482381 Rosa chinensis HOM05D005933 ORTHO05D007366 6.5e-154 548.1 478 59.8
FAN02G2268 Fragaria x ananassa HOM05D005933 ORTHO05D007366 1.1e-153 547.4 478 60.3
TWI74G0083 Tripterygium wilfordii HOM05D005933 ORTHO05D007366 2.1e-152 543.1 478 60.9
FAN05G5216 Fragaria x ananassa HOM05D005933 ORTHO05D007366 2.7e-152 542.7 478 60.0
FvH4_6g23820 Fragaria vesca HOM05D005933 ORTHO05D007366 1.0e-151 540.8 478 60.0
Ca_08457_v3 Cicer arietinum L. HOM05D005933 ORTHO05D007366 5.1e-151 538.5 478 59.4
QL07p000555 Quercus lobata HOM05D005933 ORTHO05D007366 5.1e-151 538.5 478 60.5
QL07p000522 Quercus lobata HOM05D005933 ORTHO05D007366 4.4e-150 535.4 478 60.0
Lalb_Chr25g0287121 Lupinus albus HOM05D005933 ORTHO05D007366 1.3e-149 533.9 471 60.1
Medtr7g091500 Medicago truncatula HOM05D005933 ORTHO05D007366 3.7e-149 532.3 478 58.8
arahy.Tifrunner.gnm1.ann1.EHL0AN Arachis hypogaea HOM05D005933 ORTHO05D007366 6.3e-149 531.6 477 58.3
Glyma.03G136900 Glycine max HOM05D005933 ORTHO05D007366 6.3e-149 531.6 478 59.0
PGR004G0721 Punica granatum HOM05D005933 ORTHO05D007366 6.3e-149 531.6 481 60.5
Duzib093G2041 Durio zibethinus HOM05D005933 ORTHO05D007366 1.1e-148 530.8 479 58.2
Phvul.001G132100 Phaseolus vulgaris HOM05D005933 ORTHO05D007366 1.1e-148 530.8 478 59.2
Manes.09G022000 Manihot esculenta HOM05D005933 ORTHO05D007366 2.4e-148 529.6 464 59.5
arahy.Tifrunner.gnm1.ann1.T110QE Arachis hypogaea HOM05D005933 ORTHO05D007366 4.1e-148 528.9 477 58.3
FAN14G1069 Fragaria x ananassa HOM05D005933 ORTHO05D007366 9.1e-148 527.7 464 60.6
Thecc.05G153300 Theobroma cacao HOM05D005933 ORTHO05D007366 9.1e-148 527.7 478 58.2
COL.COLO4_28284 Corchorus olitorius HOM05D005933 ORTHO05D007366 1.5e-147 526.9 473 57.7
Lj1g0013042 Lotus japonicus HOM05D005933 ORTHO05D007366 2.6e-147 526.2 478 58.4
CANSAT78G0457 Cannabis sativa HOM05D005933 ORTHO05D007366 4.5e-147 525.4 481 58.4
Eucgr.A02347 Eucalyptus grandis HOM05D005933 ORTHO05D007366 4.5e-147 525.4 478 58.8
GSVIVG01033275001 Vitis vinifera HOM05D005933 ORTHO05D007366 7.7e-147 524.6 478 59.4
Gorai.007G186200 Gossypium raimondii HOM05D005933 ORTHO05D007366 1.7e-146 523.5 476 58.2
Sabra06G0036000 Salix brachista HOM05D005933 ORTHO05D007366 1.7e-146 523.5 471 59.4
Gohir.D11G173800 Gossypium hirsutum HOM05D005933 ORTHO05D007366 3.8e-146 522.3 476 58.0
MD12G1074000 Malus domestica HOM05D005933 ORTHO05D007366 5.0e-146 521.9 477 57.0
Potri.006G051300 Populus trichocarpa HOM05D005933 ORTHO05D007366 1.9e-145 520.0 478 57.5
Gohir.A11G167500 Gossypium hirsutum HOM05D005933 ORTHO05D007366 4.7e-144 515.4 476 57.1
Psat3g072720 Pisum sativum HOM05D005933 ORTHO05D007366 6.1e-144 515.0 463 59.2
Cc06_g17560 Coffea canephora HOM05D005933 ORTHO05D007366 5.2e-143 511.9 492 55.3
Actinidia39225 Actinidia chinensis HOM05D005933 ORTHO05D007366 3.3e-142 509.2 483 56.5
CARHR244310 Cardamine hirsuta HOM05D005933 ORTHO05D007366 2.2e-141 506.5 476 56.1
Actinidia09329 Actinidia chinensis HOM05D005933 ORTHO05D007366 3.7e-141 505.8 483 56.3
Cpa.g.sc92.52 Carica papaya HOM05D005933 ORTHO05D007366 9.1e-140 501.1 448 59.4
AL7G15130 Arabidopsis lyrata HOM05D005933 ORTHO05D007366 1.2e-139 500.7 474 55.9
AT4G35910 Arabidopsis thaliana HOM05D005933 ORTHO05D007366 2.6e-139 499.6 474 55.3
PGSC0003DMG400023688 Solanum tuberosum HOM05D005933 ORTHO05D007366 2.6e-139 499.6 486 53.9
MSTRG.19860 Avicennia marina HOM05D005933 ORTHO05D007366 1.3e-138 497.3 481 55.3
Carub.0007s0431 Capsella rubella HOM05D005933 ORTHO05D007366 1.7e-138 496.9 476 56.5
Solyc10g080110.3 Solanum lycopersicum HOM05D005933 ORTHO05D007366 2.9e-138 496.1 482 53.9
Sp7g34530 Schrenkiella parvula HOM05D005933 ORTHO05D007366 1.5e-137 493.8 476 56.5
C01p02220 Brassica napus HOM05D005933 ORTHO05D007366 4.2e-137 492.3 470 56.6
Sopen10g030730 Solanum pennellii HOM05D005933 ORTHO05D007366 4.2e-137 492.3 481 53.6
A01p02040 Brassica napus HOM05D005933 ORTHO05D007366 9.4e-137 491.1 470 56.4
TPR.G854 Trifolium pratense HOM05D005933 ORTHO05D007366 1.2e-136 490.7 403 63.0
VMungo1383G3081 Vigna mungo HOM05D005933 ORTHO05D007366 1.6e-136 490.3 579 48.7
Aa31LG6G13690 Aethionema arabicum HOM05D005933 ORTHO05D007366 3.6e-136 489.2 474 54.9
BolC1t00214H Brassica oleracea HOM05D005933 ORTHO05D007366 6.1e-136 488.4 470 56.4
CSS0022562 Camellia sinensis var. sinensis HOM05D005933 ORTHO05D007366 8.0e-136 488.0 477 55.6
BraA01t00193Z Brassica rapa HOM05D005933 ORTHO05D007366 1.4e-135 487.3 470 56.2
Lsat_1_v5_gn_8_81281 Lactuca sativa HOM05D005933 ORTHO05D007366 3.0e-135 486.1 477 54.9
Rhsim03G0021100 Rhododendron simsii HOM05D005933 ORTHO05D007366 8.8e-135 484.6 472 55.9
EL10Ac3g07091 Beta vulgaris HOM05D005933 ORTHO05D007366 1.2e-134 484.2 467 54.2
Lju124A41G42 Lonicera japonica HOM05D005933 ORTHO05D007366 2.0e-134 483.4 442 56.1
Rhsim03G0022400 Rhododendron simsii HOM05D005933 ORTHO05D007366 2.0e-134 483.4 473 55.2
Oeu017944.1 Olea europaea HOM05D005933 ORTHO05D007366 5.7e-134 481.9 467 55.2
Thhalv10025158m.g Eutrema salsugineum HOM05D005933 ORTHO05D007366 7.5e-134 481.5 475 54.7
THA.LOC104811196 Tarenaya hassleriana HOM05D005933 ORTHO05D007366 1.7e-133 480.3 476 55.5
Peaxi162Scf00618g00022 Petunia axillaris HOM05D005933 ORTHO05D007366 3.7e-133 479.2 482 53.7
HanXRQChr09g0252561 Helianthus annuus HOM05D005933 ORTHO05D007366 8.2e-133 478.0 476 52.9
Hma1.2p1_2002F.1_g310760 Hydrangea macrophylla HOM05D005933 ORTHO05D007366 1.4e-132 477.2 476 55.3
BcaNung03520 Brassica carinata HOM05D005933 ORTHO05D007366 2.4e-132 476.5 473 55.2
SalBow6G0452 Salvia bowleyana HOM05D005933 ORTHO05D007366 7.0e-132 474.9 455 56.5
AUR62026040 Chenopodium quinoa HOM05D005933 ORTHO05D007366 9.1e-132 474.6 466 54.3
Hund05286 Selenicereus undatus HOM05D005933 ORTHO05D007366 1.2e-131 474.2 412 60.0
ECA236G1702 Erigeron canadensis HOM05D005933 ORTHO05D007366 2.0e-131 473.4 421 57.7
Nitab4.5_0009442g0020 Nicotiana tabacum HOM05D005933 ORTHO05D007366 2.0e-131 473.4 485 53.4
Nitab4.5_0008648g0010 Nicotiana tabacum HOM05D005933 ORTHO05D007366 2.7e-131 473.0 484 52.9
DCAR_009061 Daucus carota HOM05D005933 ORTHO05D007366 3.5e-131 472.6 495 52.5
Dinv39604 Davidia involucrata HOM05D005933 ORTHO05D007366 3.5e-131 472.6 396 62.1
vmacro07854 Vaccinium macrocarpon HOM05D005933 ORTHO05D007366 1.0e-130 471.1 513 51.3
Migut.J01758 Erythranthe guttata HOM05D005933 ORTHO05D007366 2.5e-129 466.5 476 53.4
SGA_v2.0_scaffold69G23116 Striga asiatica HOM05D005933 ORTHO05D007366 1.8e-127 460.3 472 54.0
Atru.chr1.1098 Acer truncatum HOM05D005933 ORTHO05D007366 3.7e-125 452.6 379 63.3
Ah.13g075070 Amaranthus hybridus HOM05D005933 ORTHO05D007366 4.8e-125 452.2 451 53.9
Aqoxy5G03564 Aquilegia oxysepala HOM05D005933 ORTHO05D007366 8.3e-125 451.4 480 50.8
PSO782G3339 Papaver somniferum HOM05D005933 ORTHO05D007366 1.6e-123 447.2 484 51.4
Cfa008569 Carpinus fangiana HOM05D005933 ORTHO05D007366 1.0e-119 434.5 341 66.3
AUR62024451 Chenopodium quinoa HOM05D005933 ORTHO05D007366 1.8e-119 433.7 508 48.4
Peaxi162Scf00354g00225 Petunia axillaris HOM05D005933 ORTHO05D007366 8.9e-119 431.4 473 51.2
ATR0686G233 Amborella trichopoda HOM05D005933 ORTHO05D007366 3.1e-116 422.9 430 51.6
CAN.G128.8 Capsicum annuum HOM05D005933 ORTHO05D007366 1.2e-115 421.0 380 56.6
Prupe.7G060900 Prunus persica HOM05D005933 ORTHO05D007366 2.6e-110 403.3 329 62.6
MBI16_g31719_MAGBIO Magnolia biondii HOM05D005933 ORTHO05D007366 1.2e-107 394.4 467 49.3
Hma1.2p1_2002F.1_g310770 Hydrangea macrophylla HOM05D005933 ORTHO05D007366 1.5e-105 387.5 362 56.4
unitig_749.g14146 Utricularia gibba HOM05D003650 ORTHO05D004213 6.8e-103 378.6 474 47.3
Os12g0588900 Oryza sativa ssp. japonica HOM05D005933 ORTHO05D007366 2.6e-102 376.7 404 49.8
SEGI_18184 Sequoiadendron giganteum HOM05D005933 ORTHO05D007366 3.7e-101 372.9 468 44.0
Sc13g0001740 Simmondsia chinensis HOM05D005933 ORTHO05D007366 8.1e-96 355.1 300 59.0
Oeu008914.1 Olea europaea HOM05D005933 ORTHO05D007366 6.4e-93 345.5 352 52.3
Oeu008916.1 Olea europaea HOM05D005933 ORTHO05D007366 6.4e-93 345.5 352 52.3
SHI32975 Sapria himalayana HOM05D005933 ORTHO05D000023 1.6e-91 340.9 338 54.1
Zm00001eb135000 Zea mays HOM05D005933 ORTHO05D007366 1.7e-90 337.4 412 45.9
CDE09G0169 Ceratophyllum demersum HOM05D005933 ORTHO05D007366 2.9e-85 320.1 261 62.5
HPP92_017763 Vanilla planifolia HOM05D005933 ORTHO05D007366 1.7e-74 284.3 354 45.2
Glyma.19G139200 Glycine max HOM05D005933 ORTHO05D007366 8.7e-74 282.0 239 62.8
BcaNung04276 Brassica carinata HOM05D005933 ORTHO05D007366 6.2e-72 275.8 396 45.7
AagrBONN_evm.TU.Sc2ySwM_117.299 Anthoceros agrestis HOM05D005933 ORTHO05D007366 1.8e-71 274.2 457 38.9
Mapoly0165s0023 Marchantia polymorpha HOM05D005933 ORTHO05D007366 7.6e-70 268.9 462 34.4
TAR633G2718 Trochodendron aralioides HOM05D005933 ORTHO05D007366 4.9e-69 266.2 234 61.1
Pp3c14_19420 Physcomitrium patens HOM05D005933 ORTHO05D007366 1.9e-60 237.7 307 42.0
SMO145G0218 Selaginella moellendorffii HOM05D005933 ORTHO05D007366 1.9e-60 237.7 350 39.1
Cfa017604 Carpinus fangiana HOM05D005933 ORTHO05D007366 1.1e-55 221.9 391 40.2
CDE02G1215 Ceratophyllum demersum HOM05D002948 ORTHO05D003577 1.3e-50 204.9 173 59.0
Cfa017749 Carpinus fangiana HOM05D005933 ORTHO05D007366 2.8e-48 197.2 232 48.3
C07p62070 Brassica napus HOM05D005933 ORTHO05D007366 1.4e-47 194.9 160 62.5
BolC7t46624H Brassica oleracea HOM05D005933 ORTHO05D007366 1.4e-47 194.9 160 62.5
Rhsim03G0020400 Rhododendron simsii HOM05D005933 ORTHO05D007366 5.3e-47 193.0 234 50.4
CBR_g982 Chara braunii HOM05D005933 ORTHO05D007366 1.2e-38 165.2 422 29.1
Atru.chr1.1100 Acer truncatum HOM05D005933 ORTHO05D007366 1.4e-36 158.3 179 54.7
Cc06_g12380 Coffea canephora HOM05D005933 ORTHO05D007366 1.5e-33 148.3 178 47.8
TAR633G2604 Trochodendron aralioides HOM05D005933 ORTHO05D007366 6.3e-32 142.9 102 68.6
MD12G1074100 Malus domestica HOM05D005933 ORTHO05D007366 3.5e-30 137.1 165 47.9
Sc13g0001730 Simmondsia chinensis HOM05D005933 ORTHO05D007366 1.0e-29 135.6 137 51.8
BcaNung03522 Brassica carinata HOM05D005933 ORTHO05D007366 3.8e-29 133.7 139 51.1
TAR636G2120 Trochodendron aralioides HOM05D005933 ORTHO05D007366 1.2e-27 128.6 116 56.0
Cre01.g043500 Chlamydomonas reinhardtii HOM05D005933 ORTHO05D007366 5.5e-20 103.2 450 23.3
Dinv12483 Davidia involucrata HOM05D005933 ORTHO05D007366 1.3e-16 92.0 112 48.2
SHI32976 Sapria himalayana HOM05D000105 ORTHO05D000023 9.1e-15 85.9 115 44.3
Nn8g40508 Nelumbo nucifera HOM05D005933 ORTHO05D007366 1.2e-14 85.5 67 62.7
Nn8g40507 Nelumbo nucifera HOM05D005933 ORTHO05D007366 2.5e-12 77.8 101 45.5
Rhsim03G0024000 Rhododendron simsii HOM05D005933 ORTHO05D007366 8.8e-10 69.3 55 65.5
Rhsim03G0022600 Rhododendron simsii HOM05D005933 ORTHO05D007366 3.4e-09 67.4 52 67.3


User provided reference genes

Program Settings