Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C009545.2 Cucumis melo HOM05D004426 ORTHO05D005417 0.0e+00 4118.2 2157 100.0
CsaV3_3G038030 Cucumis sativus L. HOM05D004426 ORTHO05D005417 0.0e+00 3947.9 2158 96.1
ClCG10G018280 Citrullus lanatus HOM05D004426 ORTHO05D005417 0.0e+00 3814.6 2161 92.8
Sed0007001 Sechium edule HOM05D004426 ORTHO05D005417 0.0e+00 3463.7 2164 85.1
Prupe.7G093800 Prunus persica HOM05D004426 ORTHO05D005417 0.0e+00 2380.9 2181 61.7
RcHm_v2.0_Chr3g0476141 Rosa chinensis HOM05D004426 ORTHO05D005417 0.0e+00 2330.1 2187 60.7
QL07p036440 Quercus lobata HOM05D004426 ORTHO05D005417 0.0e+00 2316.2 2200 60.7
Atru.chr8.1340 Acer truncatum HOM05D004426 ORTHO05D005417 0.0e+00 2310.8 2193 59.8
GSVIVG01020162001 Vitis vinifera HOM05D004426 ORTHO05D005417 0.0e+00 2303.1 2212 59.3
FvH4_6g20410 Fragaria vesca HOM05D004426 ORTHO05D005417 0.0e+00 2280.0 2187 59.6
FAN05G1531 Fragaria x ananassa HOM05D004426 ORTHO05D005417 0.0e+00 2262.3 2213 59.0
Ciclev10010887m.g Citrus clementina HOM05D004426 ORTHO05D005417 0.0e+00 2260.7 2193 59.4
Cfa020044 Carpinus fangiana HOM05D004426 ORTHO05D005417 0.0e+00 2260.0 2205 59.6
CiPaw.10G018400 Carya illinoinensis HOM05D004426 ORTHO05D005417 0.0e+00 2260.0 2205 59.1
Thecc.05G105900 Theobroma cacao HOM05D004426 ORTHO05D005417 0.0e+00 2253.0 2192 58.9
FAN05G5173 Fragaria x ananassa HOM05D004426 ORTHO05D005417 0.0e+00 2241.8 2243 58.0
Manes.09G046200 Manihot esculenta HOM05D004426 ORTHO05D005417 0.0e+00 2239.2 2199 57.9
FAN09G4366 Fragaria x ananassa HOM05D004426 ORTHO05D005417 0.0e+00 2232.2 2248 57.9
CANSAT64G0287 Cannabis sativa HOM05D004426 ORTHO05D005417 0.0e+00 2229.9 2191 58.3
FAN02G2855 Fragaria x ananassa HOM05D004426 ORTHO05D005417 0.0e+00 2219.1 2258 57.4
MD14G1040500 Malus domestica HOM05D004426 ORTHO05D005417 0.0e+00 2216.8 2187 58.4
Potri.016G069100 Populus trichocarpa HOM05D004426 ORTHO05D005417 0.0e+00 2194.9 2195 57.6
Dinv12344 Davidia involucrata HOM05D004426 ORTHO05D005417 0.0e+00 2187.5 2209 57.9
COL.COLO4_29556 Corchorus olitorius HOM05D004426 ORTHO05D005417 0.0e+00 2186.4 2190 57.4
TWI74G0602 Tripterygium wilfordii HOM05D004426 ORTHO05D005417 0.0e+00 2171.0 2205 57.0
Gorai.009G393700 Gossypium raimondii HOM05D004426 ORTHO05D005417 0.0e+00 2154.4 2195 57.0
Sabra16G0070000 Salix brachista HOM05D004426 ORTHO05D005417 0.0e+00 2132.5 2242 56.3
Eucgr.A02578 Eucalyptus grandis HOM05D004426 ORTHO05D005417 0.0e+00 2125.9 2189 56.9
Actinidia37752 Actinidia chinensis HOM05D004426 ORTHO05D005417 0.0e+00 2121.7 2218 55.8
arahy.Tifrunner.gnm1.ann1.C5PQVK Arachis hypogaea HOM05D004426 ORTHO05D005417 0.0e+00 2097.4 2207 55.5
Lj5g0003460 Lotus japonicus HOM05D004426 ORTHO05D005417 0.0e+00 2087.4 2239 54.8
TAR369G0229 Trochodendron aralioides HOM05D004426 ORTHO05D005417 0.0e+00 2082.8 2315 53.1
Glyma.10G082100 Glycine max HOM05D004426 ORTHO05D005417 0.0e+00 2081.2 2202 55.0
Glyma.02G195600 Glycine max HOM05D004426 ORTHO05D005417 0.0e+00 2079.3 2204 55.3
arahy.Tifrunner.gnm1.ann1.S879XT Arachis hypogaea HOM05D004426 ORTHO05D005417 0.0e+00 2063.9 2207 54.8
Lalb_Chr06g0172651 Lupinus albus HOM05D004426 ORTHO05D005417 0.0e+00 2062.7 2212 54.6
Ca_11691_v3 Cicer arietinum L. HOM05D004426 ORTHO05D005417 0.0e+00 2059.6 2217 55.1
Phvul.007G267500 Phaseolus vulgaris HOM05D004426 ORTHO05D005417 0.0e+00 2043.9 2210 54.4
Cc06_g06650 Coffea canephora HOM05D004426 ORTHO05D005417 0.0e+00 1980.3 2217 53.4
TPR.G2812 Trifolium pratense HOM05D004426 ORTHO05D005417 0.0e+00 1973.7 2213 53.5
PGR004G1788 Punica granatum HOM05D004426 ORTHO05D005417 0.0e+00 1973.4 2202 54.4
Medtr1g056800 Medicago truncatula HOM05D004426 ORTHO05D005417 0.0e+00 1963.0 2216 52.8
Psat6g115600 Pisum sativum HOM05D004426 ORTHO05D005417 0.0e+00 1958.7 2252 53.1
Nn6g34673 Nelumbo nucifera HOM05D004426 ORTHO05D005417 0.0e+00 1947.6 2273 52.1
Dinv31767 Davidia involucrata HOM05D004426 ORTHO05D005417 0.0e+00 1918.3 1718 61.2
THA.LOC104816640 Tarenaya hassleriana HOM05D004426 ORTHO05D005417 0.0e+00 1911.0 2197 52.3
PSO339G1314 Papaver somniferum HOM05D004426 ORTHO05D005417 0.0e+00 1895.2 2280 51.1
Thhalv10019873m.g Eutrema salsugineum HOM05D004426 ORTHO05D005417 0.0e+00 1885.2 2187 50.9
PSO384G1970 Papaver somniferum HOM05D004426 ORTHO05D005417 0.0e+00 1881.7 2277 50.6
AL3G16340 Arabidopsis lyrata HOM05D004426 ORTHO05D005417 0.0e+00 1875.9 2189 51.2
VMungo0720G0551 Vigna mungo HOM05D004426 ORTHO05D005417 0.0e+00 1874.4 2159 52.5
Gohir.A04G053650 Gossypium hirsutum HOM05D004426 ORTHO05D005417 0.0e+00 1871.3 2005 54.9
AT3G05680 Arabidopsis thaliana HOM05D004426 ORTHO05D005417 0.0e+00 1865.9 2185 50.9
Nitab4.5_0004363g0030 Nicotiana tabacum HOM05D004426 ORTHO05D005417 0.0e+00 1864.4 2191 51.7
Aqoxy1G00646 Aquilegia oxysepala HOM05D004426 ORTHO05D005417 0.0e+00 1863.2 2278 51.0
Gohir.D04G091700 Gossypium hirsutum HOM05D004426 ORTHO05D005417 0.0e+00 1860.5 2005 54.9
TAR375G1129 Trochodendron aralioides HOM05D004426 ORTHO05D005417 0.0e+00 1855.5 2243 50.7
Migut.J00694 Erythranthe guttata HOM05D004426 ORTHO05D005417 0.0e+00 1852.0 2226 50.7
Oeu035645.2 Olea europaea HOM05D004426 ORTHO05D005417 0.0e+00 1850.1 2195 51.9
Sopen03g029610 Solanum pennellii HOM05D004426 ORTHO05D005417 0.0e+00 1849.3 2213 50.8
DCAR_020696 Daucus carota HOM05D004426 ORTHO05D005417 0.0e+00 1846.6 2188 51.6
vmacro07479 Vaccinium macrocarpon HOM05D004426 ORTHO05D005417 0.0e+00 1845.9 2266 50.5
CARHR080130 Cardamine hirsuta HOM05D004426 ORTHO05D005417 0.0e+00 1841.2 2183 50.3
A03p34260 Brassica napus HOM05D004426 ORTHO05D005417 0.0e+00 1840.1 2184 49.8
Solyc03g020020.3 Solanum lycopersicum HOM05D004426 ORTHO05D005417 0.0e+00 1838.2 2213 50.7
C03p41680 Brassica napus HOM05D004426 ORTHO05D005417 0.0e+00 1832.0 2182 49.8
Peaxi162Scf00171g00133 Petunia axillaris HOM05D004426 ORTHO05D005417 0.0e+00 1832.0 2201 50.8
MSTRG.5892 Avicennia marina HOM05D004426 ORTHO05D005417 0.0e+00 1828.9 2210 50.6
BraA03t12600Z Brassica rapa HOM05D004426 ORTHO05D005417 0.0e+00 1828.1 2200 49.5
Sp3g04560 Schrenkiella parvula HOM05D004426 ORTHO05D005417 0.0e+00 1818.5 2184 49.9
Nitab4.5_0001495g0100 Nicotiana tabacum HOM05D004426 ORTHO05D005417 0.0e+00 1807.0 2214 50.3
BolC3t16451H Brassica oleracea HOM05D004426 ORTHO05D005417 0.0e+00 1805.4 2203 49.2
Carub.0003s0502 Capsella rubella HOM05D004426 ORTHO05D005417 0.0e+00 1805.0 2189 49.8
BcaB04g19244 Brassica carinata HOM05D004426 ORTHO05D005417 0.0e+00 1803.9 2181 49.4
Aa31LG5G16100 Aethionema arabicum HOM05D004426 ORTHO05D005417 0.0e+00 1802.7 2186 49.5
Sc22g0002960 Simmondsia chinensis HOM05D004426 ORTHO05D005417 0.0e+00 1796.9 1925 54.0
EL10Ac5g11771 Beta vulgaris HOM05D004426 ORTHO05D005417 0.0e+00 1796.6 2191 50.0
HanXRQChr13g0398531 Helianthus annuus HOM05D004426 ORTHO05D005417 0.0e+00 1768.4 2146 51.2
ECA233G4189 Erigeron canadensis HOM05D004426 ORTHO05D005417 0.0e+00 1764.6 2177 50.5
AUR62040133 Chenopodium quinoa HOM05D004426 ORTHO05D005417 0.0e+00 1728.8 2168 50.2
AUR62027347 Chenopodium quinoa HOM05D004426 ORTHO05D005417 0.0e+00 1704.1 2138 50.0
Lsat_1_v5_gn_6_33801 Lactuca sativa HOM05D004426 ORTHO05D005417 0.0e+00 1699.9 1980 52.0
Ah.12g059670 Amaranthus hybridus HOM05D004426 ORTHO05D005417 0.0e+00 1684.5 2197 47.9
SGA_v2.0_scaffold115G32146 Striga asiatica HOM05D004426 ORTHO05D005417 0.0e+00 1670.2 2192 47.3
MD12G1041400 Malus domestica HOM05D004426 ORTHO05D005417 0.0e+00 1652.5 1372 63.0
CSS0006601 Camellia sinensis var. sinensis HOM05D004426 ORTHO05D005417 0.0e+00 1579.7 1389 60.3
Haze_20160 Corylus avellana HOM05D004426 ORTHO05D005417 0.0e+00 1578.1 1421 60.4
CSS0032246 Camellia sinensis var. sinensis HOM05D004426 ORTHO05D005417 0.0e+00 1576.2 1389 60.3
ATR0665G194 Amborella trichopoda HOM05D004426 ORTHO05D005417 0.0e+00 1525.8 2120 45.4
HPP92_005908 Vanilla planifolia HOM05D004426 ORTHO05D005417 0.0e+00 1433.7 2224 44.4
Zm00001eb220020 Zea mays HOM05D004426 ORTHO05D005417 0.0e+00 1359.7 2273 41.8
FAN14G5903 Fragaria x ananassa HOM05D004426 ORTHO05D005417 0.0e+00 1330.1 1449 56.0
Oeu036110.1 Olea europaea HOM05D004426 ORTHO05D005417 0.0e+00 1268.1 1229 56.6
FAN09G0172 Fragaria x ananassa HOM05D004426 ORTHO05D005417 0.0e+00 1144.8 1347 52.8
MBI03_g28304_MAGBIO Magnolia biondii HOM05D004426 ORTHO05D005417 0.0e+00 1101.3 1631 45.4
unitig_578.g15811 Utricularia gibba HOM05D004426 ORTHO05D005417 0.0e+00 1097.4 2194 38.2
Cpa.g.sc104.21 Carica papaya HOM05D004426 ORTHO05D005417 7.5e-306 1055.0 1242 51.9
Duzib093G0840 Durio zibethinus HOM05D004426 ORTHO05D005417 3.7e-289 999.6 1227 51.3
Lj1A1205G57 Lonicera japonica HOM05D004426 ORTHO05D005417 9.9e-266 921.8 1370 46.1
Lj1A1205T55 Lonicera japonica HOM05D004426 ORTHO05D005417 1.6e-255 887.9 815 60.0
SHI25008 Sapria himalayana HOM05D004426 ORTHO05D000002 1.5e-242 844.7 1118 44.8
Rhsim04G0136900 Rhododendron simsii HOM05D004426 ORTHO05D005417 1.8e-227 794.7 1312 41.2
Mapoly0014s0197 Marchantia polymorpha HOM05D004426 ORTHO05D005417 5.6e-184 650.2 1761 30.9
CDE07G0138 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 2.8e-175 621.3 960 42.7
Haze_20162 Corylus avellana HOM05D004426 ORTHO05D005417 3.2e-163 581.3 838 50.7
CDE04G2905 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 8.9e-158 563.1 486 59.9
BcaB04g19248 Brassica carinata HOM05D004426 ORTHO05D005417 1.6e-154 552.4 1029 41.2
CSS0017834 Camellia sinensis var. sinensis HOM05D004426 ORTHO05D005417 5.8e-149 533.9 817 49.1
CSS0033092 Camellia sinensis var. sinensis HOM05D004426 ORTHO05D005417 9.9e-149 533.1 817 49.1
CAN.G861.37 Capsicum annuum HOM05D004426 ORTHO05D005417 2.4e-147 528.5 931 44.3
SEGI_22283 Sequoiadendron giganteum HOM05D004426 ORTHO05D005417 7.1e-139 500.4 874 38.9
Pp3c22_17700 Physcomitrium patens HOM05D004426 ORTHO05D005417 1.4e-131 476.1 2078 28.0
AagrBONN_evm.TU.Sc2ySwM_368.1933 Anthoceros agrestis HOM05D004426 ORTHO05D005417 1.5e-120 439.5 1389 28.7
SEGI_03524 Sequoiadendron giganteum HOM05D004426 ORTHO05D005417 3.6e-114 418.3 426 53.1
Duzib093G0602 Durio zibethinus HOM05D004426 ORTHO05D005417 8.2e-111 407.1 360 63.1
Cpa.g.sc104.20 Carica papaya HOM05D004426 ORTHO05D005417 1.3e-103 383.3 893 34.9
Rhsim04G0099300 Rhododendron simsii HOM05D004426 ORTHO05D005417 7.2e-99 367.5 648 39.0
RcHm_v2.0_Chr3g0476171 Rosa chinensis HOM05D004426 ORTHO05D005417 9.1e-78 297.4 215 70.2
PGSC0003DMG400015284 Solanum tuberosum HOM05D004426 ORTHO05D005417 9.1e-78 297.4 279 55.6
CBR_g906 Chara braunii HOM05D004426 ORTHO05D005417 1.3e-76 293.5 1880 22.7
MBI03_g28305_MAGBIO Magnolia biondii HOM05D004426 ORTHO05D005417 6.1e-74 284.6 298 57.0
MD12G1041200 Malus domestica HOM05D004426 ORTHO05D005417 4.3e-67 261.9 427 47.8
CDE04G3616 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 7.3e-67 261.2 382 39.3
Psat0s2215g0200 Pisum sativum HOM05D004426 ORTHO05D005417 1.2e-64 253.8 335 45.7
Actinidia03882 Actinidia chinensis HOM05D004426 ORTHO05D005417 2.9e-63 249.2 163 77.9
Psat6g150080 Pisum sativum HOM05D004426 ORTHO05D005417 1.9e-62 246.5 323 46.1
CDE07G0146 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 1.1e-57 230.7 153 76.5
Dinv31766 Davidia involucrata HOM05D004426 ORTHO05D005417 7.3e-51 208.0 443 41.5
Psat2g116240 Pisum sativum HOM05D004426 ORTHO05D005417 2.8e-50 206.1 263 51.0
TPR.G15240 Trifolium pratense HOM05D004426 ORTHO05D005417 1.1e-49 204.1 257 55.3
Os03g0554900 Oryza sativa ssp. japonica HOM05D004426 ORTHO05D005417 8.9e-49 201.1 698 35.5
Psat2g147520 Pisum sativum HOM05D001362 ORTHO05D001310 3.0e-44 186.0 137 65.0
Psat2g053520 Pisum sativum HOM05D004426 ORTHO05D005417 1.5e-40 173.7 323 38.4
Actinidia03991 Actinidia chinensis HOM05D004426 ORTHO05D005417 2.6e-40 172.9 112 77.7
Psat2g116200 Pisum sativum HOM05D004426 ORTHO05D005417 4.9e-39 168.7 178 59.0
Os03g0554950 Oryza sativa ssp. japonica HOM05D004426 ORTHO05D005417 3.9e-36 159.1 208 43.8
Psat0s2215g0120 Pisum sativum HOM05D004426 ORTHO05D005417 1.2e-34 154.1 128 60.2
CDE04G0059 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 6.4e-31 141.7 339 36.3
Oeu036109.3 Olea europaea HOM05D004426 ORTHO05D005417 6.4e-31 141.7 448 35.7
Actinidia03883 Actinidia chinensis HOM05D004426 ORTHO05D005417 3.9e-28 132.5 128 53.1
CDE04G2111 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 4.3e-27 129.0 225 36.9
Psat5g196200 Pisum sativum HOM05D004426 ORTHO05D005417 2.0e-24 120.2 121 58.7
SHI25011 Sapria himalayana HOM05D000023 ORTHO05D000014 7.9e-21 108.2 68 75.0
Psat5g133160 Pisum sativum HOM05D004426 ORTHO05D005417 3.5e-13 82.8 119 45.4
Mapoly0074s0069 Marchantia polymorpha HOM05D004426 ORTHO05D005417 3.9e-12 79.3 133 33.1
BNapus_Darmor_BZH_scaffold_118p00130 Brassica napus HOM05D004426 ORTHO05D005417 5.6e-11 75.5 196 32.1
Psat5g196160 Pisum sativum HOM05D004426 ORTHO05D005417 4.0e-09 69.3 71 56.3
CDE07G2012 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 1.2e-08 67.8 377 26.5
SHI25003 Sapria himalayana HOM05D004426 ORTHO05D002750 1.2e-08 67.8 97 41.2
Actinidia03993 Actinidia chinensis HOM05D004426 ORTHO05D005417 4.5e-08 65.9 85 55.3
CDE04G1213 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 1.0e-07 64.7 253 30.0
Psat2g137560 Pisum sativum HOM05D004426 ORTHO05D005417 1.3e-07 64.3 71 53.5
Hund10805 Selenicereus undatus HOM05D001165 ORTHO05D000006 1.3e-07 64.3 45 73.3
Actinidia03992 Actinidia chinensis HOM05D004426 ORTHO05D005417 1.1e-06 61.2 80 38.8


User provided reference genes

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