Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C008923.2 Cucumis melo HOM05D004410 ORTHO05D006134 7.2e-164 580.5 289 100.0
MELO3C008596.2 Cucumis melo HOM05D004410 ORTHO05D006134 2.7e-158 562.0 289 96.5
CsaV3_5G008380 Cucumis sativus L. HOM05D004410 ORTHO05D006134 1.3e-157 559.7 289 96.5
Sed0003098 Sechium edule HOM05D004410 ORTHO05D006134 7.3e-140 500.7 289 85.8
ClCG11G007510 Citrullus lanatus HOM05D004410 ORTHO05D006134 3.6e-139 498.4 289 87.5
GSVIVG01010906001 Vitis vinifera HOM05D004410 ORTHO05D006134 1.4e-135 486.5 292 81.8
Dinv26445 Davidia involucrata HOM05D004410 ORTHO05D006134 9.2e-135 483.8 293 82.6
Thecc.09G180400 Theobroma cacao HOM05D004410 ORTHO05D006134 6.0e-134 481.1 292 80.5
Duzib170G0185 Durio zibethinus HOM05D004410 ORTHO05D006134 3.0e-133 478.8 292 80.5
Cfa005486 Carpinus fangiana HOM05D004410 ORTHO05D006134 3.9e-133 478.4 292 81.5
Gorai.004G025800 Gossypium raimondii HOM05D004410 ORTHO05D006134 2.5e-132 475.7 292 78.8
Cfa013429 Carpinus fangiana HOM05D004410 ORTHO05D006134 3.3e-132 475.3 292 80.8
Ciclev10009088m.g Citrus clementina HOM05D004410 ORTHO05D006134 4.3e-132 474.9 292 80.5
Gohir.D08G028700 Gossypium hirsutum HOM05D004410 ORTHO05D006134 4.3e-132 474.9 292 78.8
CAN.G65.73 Capsicum annuum HOM05D004410 ORTHO05D006134 9.5e-132 473.8 290 78.6
CSS0020745 Camellia sinensis var. sinensis HOM05D004410 ORTHO05D006134 8.1e-131 470.7 290 79.3
Cpa.g.sc95.31 Carica papaya HOM05D004410 ORTHO05D006134 8.1e-131 470.7 292 79.8
PSO210G4717 Papaver somniferum HOM05D004410 ORTHO05D006134 3.1e-130 468.8 291 80.8
MSTRG.4318 Avicennia marina HOM05D004410 ORTHO05D006134 8.9e-130 467.2 292 78.4
Gohir.A08G018100 Gossypium hirsutum HOM05D004410 ORTHO05D006134 8.9e-130 467.2 292 77.4
TAR626G0361 Trochodendron aralioides HOM05D004410 ORTHO05D006134 8.9e-130 467.2 294 79.9
COL.COLO4_23558 Corchorus olitorius HOM05D004410 ORTHO05D006134 1.2e-129 466.8 292 78.1
Oeu038397.1 Olea europaea HOM05D004410 ORTHO05D006134 2.0e-129 466.1 292 78.1
PSO210G0218 Papaver somniferum HOM05D004410 ORTHO05D006134 2.0e-129 466.1 291 80.1
Eucgr.L02823 Eucalyptus grandis HOM05D004410 ORTHO05D006134 4.4e-129 464.9 292 78.8
Rhsim12G0146500 Rhododendron simsii HOM05D004410 ORTHO05D006134 5.8e-129 464.5 290 79.0
Eucgr.C02260 Eucalyptus grandis HOM05D004410 ORTHO05D006134 7.6e-129 464.2 292 78.4
Solyc06g072250.3 Solanum lycopersicum HOM05D004410 ORTHO05D006134 7.6e-129 464.2 290 77.2
Manes.06G021200 Manihot esculenta HOM05D004410 ORTHO05D006134 2.2e-128 462.6 292 77.7
Sopen06g028570 Solanum pennellii HOM05D004410 ORTHO05D006134 2.9e-128 462.2 290 76.9
CiPaw.08G034000 Carya illinoinensis HOM05D004410 ORTHO05D006134 5.4e-127 458.0 292 76.0
CSS0004658 Camellia sinensis var. sinensis HOM05D004410 ORTHO05D006134 9.2e-127 457.2 290 77.6
CANSAT56G1932 Cannabis sativa HOM05D004410 ORTHO05D006134 9.2e-127 457.2 294 76.5
Lj5C681T1 Lonicera japonica HOM05D004410 ORTHO05D006134 1.2e-126 456.8 291 77.3
Hund26318 Selenicereus undatus HOM05D004410 ORTHO05D006134 1.6e-126 456.4 292 76.7
Sc14g0001390 Simmondsia chinensis HOM05D004410 ORTHO05D006134 2.1e-126 456.1 292 76.7
DCAR_019823 Daucus carota HOM05D004410 ORTHO05D006134 2.7e-126 455.7 301 74.4
PGR044G0126 Punica granatum HOM05D004410 ORTHO05D006134 2.7e-126 455.7 323 72.4
Potri.001G338700 Populus trichocarpa HOM05D004410 ORTHO05D006134 1.7e-125 453.0 292 75.0
Cc09_g07700 Coffea canephora HOM05D004410 ORTHO05D006134 1.5e-124 449.9 292 76.4
Potri.018G049800 Populus trichocarpa HOM05D004410 ORTHO05D006134 1.5e-124 449.9 292 75.0
HanXRQChr06g0179561 Helianthus annuus HOM05D004410 ORTHO05D006134 3.3e-124 448.7 292 75.0
Migut.D01496 Erythranthe guttata HOM05D004410 ORTHO05D006134 7.3e-124 447.6 293 76.5
EL10Ac8g18319 Beta vulgaris HOM05D004410 ORTHO05D006134 1.6e-123 446.4 292 76.0
Nitab4.5_0000339g0120 Nicotiana tabacum HOM05D004410 ORTHO05D006134 2.1e-123 446.0 290 74.8
RcHm_v2.0_Chr4g0400231 Rosa chinensis HOM05D004410 ORTHO05D006134 2.1e-123 446.0 290 74.8
Ah.14g083650 Amaranthus hybridus HOM05D004410 ORTHO05D006134 4.7e-123 444.9 292 75.3
THA.LOC104817784 Tarenaya hassleriana HOM05D004410 ORTHO05D006134 4.7e-123 444.9 294 74.8
Nn8g40987 Nelumbo nucifera HOM05D004410 ORTHO05D006134 6.2e-123 444.5 273 80.6
Lj7C624G8 Lonicera japonica HOM05D004410 ORTHO05D006134 1.1e-122 443.7 291 75.3
Aqoxy3G03862 Aquilegia oxysepala HOM05D004410 ORTHO05D006134 1.8e-122 443.0 293 74.7
arahy.Tifrunner.gnm1.ann1.FB81IM Arachis hypogaea HOM05D004410 ORTHO05D006134 1.8e-122 443.0 292 74.3
QL11p004818 Quercus lobata HOM05D004410 ORTHO05D006134 2.4e-122 442.6 291 75.6
Sabra03G0001500 Salix brachista HOM05D004410 ORTHO05D006134 5.3e-122 441.4 304 71.4
arahy.Tifrunner.gnm1.ann1.2H7I9L Arachis hypogaea HOM05D004410 ORTHO05D006134 6.9e-122 441.0 292 74.0
Lalb_Chr07g0180591 Lupinus albus HOM05D004410 ORTHO05D006134 7.6e-121 437.6 292 72.9
TWI75G1515 Tripterygium wilfordii HOM05D004410 ORTHO05D006134 9.9e-121 437.2 326 68.4
Oeu016123.1 Olea europaea HOM05D004410 ORTHO05D006134 1.3e-120 436.8 321 70.1
TWI36G0301 Tripterygium wilfordii HOM05D004410 ORTHO05D006134 3.8e-120 435.3 292 73.3
Lsat_1_v5_gn_8_69561 Lactuca sativa HOM05D004410 ORTHO05D005614 6.4e-120 434.5 297 73.1
CDE06G0833 Ceratophyllum demersum HOM05D004410 ORTHO05D006134 1.4e-119 433.3 292 73.3
ECA236G3126 Erigeron canadensis HOM05D004410 ORTHO05D006134 4.2e-119 431.8 292 73.6
Glyma.17G060900 Glycine max HOM05D004410 ORTHO05D006134 4.2e-119 431.8 292 72.9
Zm00001eb258180 Zea mays HOM05D004410 ORTHO05D006134 1.2e-118 430.3 292 71.6
AL8G33250 Arabidopsis lyrata HOM05D004410 ORTHO05D006134 2.7e-118 429.1 292 72.9
AUR62021333 Chenopodium quinoa HOM05D004410 ORTHO05D006134 3.5e-118 428.7 292 74.0
SalBow8G1532 Salvia bowleyana HOM05D004410 ORTHO05D006134 6.0e-118 427.9 293 72.7
AUR62033248 Chenopodium quinoa HOM05D004410 ORTHO05D006134 1.7e-117 426.4 292 72.9
Thhalv10014295m.g Eutrema salsugineum HOM05D004410 ORTHO05D006134 1.7e-117 426.4 292 73.3
FAN07G0604 Fragaria x ananassa HOM05D004410 ORTHO05D006134 1.1e-116 423.7 290 70.7
Peaxi162Scf00171g00233 Petunia axillaris HOM05D004410 ORTHO05D006134 1.5e-116 423.3 268 76.5
Ah.09g230150 Amaranthus hybridus HOM05D004410 ORTHO05D006134 1.9e-116 422.9 289 73.7
Os02g0804300 Oryza sativa ssp. japonica HOM05D004410 ORTHO05D006134 2.8e-115 419.1 294 70.4
unitig_26.g9274 Utricularia gibba HOM05D004410 ORTHO05D006134 2.8e-115 419.1 291 72.2
FvH4_4g07620 Fragaria vesca HOM05D004410 ORTHO05D006134 3.6e-115 418.7 290 70.3
FAN22G1351 Fragaria x ananassa HOM05D004410 ORTHO05D006134 3.6e-115 418.7 290 70.7
Carub.0008s1778 Capsella rubella HOM05D004410 ORTHO05D006134 8.1e-115 417.5 292 71.2
Haze_21974 Corylus avellana HOM05D004410 ORTHO05D006134 2.4e-114 416.0 237 85.2
Aa31sc36G40 Aethionema arabicum HOM05D004410 ORTHO05D006134 3.1e-114 415.6 297 72.4
VMungo1215G0063 Vigna mungo HOM05D004410 ORTHO05D006134 4.0e-114 415.2 292 70.2
Sp6g19010 Schrenkiella parvula HOM05D004410 ORTHO05D006134 4.5e-113 411.8 299 70.6
AT5G57280 Arabidopsis thaliana HOM05D004410 ORTHO05D006134 5.8e-113 411.4 292 69.9
CARHR271080 Cardamine hirsuta HOM05D004410 ORTHO05D006134 1.3e-112 410.2 294 69.4
MD13G1245300 Malus domestica HOM05D004410 ORTHO05D006134 1.3e-112 410.2 290 71.4
Sabra03G0004700 Salix brachista HOM05D004410 ORTHO05D006134 1.3e-112 410.2 328 65.2
CANSAT21G0708 Cannabis sativa HOM05D004410 ORTHO05D006134 2.2e-112 409.5 293 70.0
SEGI_20363 Sequoiadendron giganteum HOM05D004410 ORTHO05D006134 2.9e-112 409.1 292 69.9
Lj3g0011551 Lotus japonicus HOM05D004410 ORTHO05D006134 1.9e-111 406.4 293 69.6
PGSC0003DMG400027051 Solanum tuberosum HOM05D004410 ORTHO05D006134 1.9e-111 406.4 290 69.3
FAN17G1447 Fragaria x ananassa HOM05D004410 ORTHO05D006134 4.2e-111 405.2 308 66.2
Prupe.1G079400 Prunus persica HOM05D004410 ORTHO05D006134 4.2e-111 405.2 289 70.6
vmacro16466 Vaccinium macrocarpon HOM05D004410 ORTHO05D006134 4.2e-111 405.2 385 58.7
FAN12G4072 Fragaria x ananassa HOM05D004410 ORTHO05D006134 7.1e-111 404.4 310 65.5
Lj3g0017980 Lotus japonicus HOM05D004410 ORTHO05D006134 9.3e-111 404.1 292 68.5
Ca_21245_v3 Cicer arietinum L. HOM05D004410 ORTHO05D006134 4.6e-110 401.7 298 68.1
Phvul.003G141775 Phaseolus vulgaris HOM05D004410 ORTHO05D006134 6.0e-110 401.4 292 68.5
CANSAT78G0037 Cannabis sativa HOM05D004410 ORTHO05D006134 1.3e-109 400.2 292 68.2
CANSAT78G1648 Cannabis sativa HOM05D004410 ORTHO05D006134 1.3e-109 400.2 292 68.2
C03p15070 Brassica napus HOM05D004410 ORTHO05D006134 3.0e-109 399.1 291 69.8
BolC3t13949H Brassica oleracea HOM05D004410 ORTHO05D006134 3.0e-109 399.1 291 69.8
CANSAT78G1079 Cannabis sativa HOM05D004410 ORTHO05D006134 6.7e-109 397.9 292 67.8
TPR.G5373 Trifolium pratense HOM05D004410 ORTHO05D006134 1.1e-108 397.1 289 67.5
MD16G1253000 Malus domestica HOM05D004410 ORTHO05D006134 1.5e-108 396.7 291 69.8
Psat0s4042g0040 Pisum sativum HOM05D004410 ORTHO05D006134 6.2e-107 391.3 293 67.2
BcaB05g22331 Brassica carinata HOM05D004410 ORTHO05D006134 1.4e-106 390.2 292 68.2
Glyma.13G099200 Glycine max HOM05D004410 ORTHO05D006134 4.0e-106 388.7 291 67.4
SGA_v2.0_scaffold36G14352 Striga asiatica HOM05D004410 ORTHO05D006134 9.0e-106 387.5 231 80.5
Pp3c12_7620 Physcomitrium patens HOM05D004410 ORTHO05D006134 1.5e-105 386.7 297 65.7
A10p17910 Brassica napus HOM05D004410 ORTHO05D006134 2.0e-105 386.3 291 67.4
A03p12910 Brassica napus HOM05D004410 ORTHO05D006134 2.6e-105 386.0 291 67.4
Mapoly0020s0093 Marchantia polymorpha HOM05D004410 ORTHO05D006134 2.9e-104 382.5 292 65.8
AagrBONN_evm.TU.Sc2ySwM_344.4914 Anthoceros agrestis HOM05D004410 ORTHO05D006134 2.7e-102 375.9 293 64.8
SMO367G1042 Selaginella moellendorffii HOM05D004410 ORTHO05D006134 2.3e-101 372.9 296 65.2
Medtr4g007420 Medicago truncatula HOM05D004410 ORTHO05D006134 2.9e-96 355.9 292 61.6
Nitab4.5_0003040g0070 Nicotiana tabacum HOM05D004410 ORTHO05D006134 6.5e-96 354.8 291 64.3
ATR0561G198 Amborella trichopoda HOM05D004410 ORTHO05D006134 2.1e-94 349.7 227 72.2
Nitab4.5_0000782g0050 Nicotiana tabacum HOM05D004410 ORTHO05D006134 1.8e-93 346.7 298 62.1
SGA_v2.0_scaffold172G39079 Striga asiatica HOM05D004410 ORTHO05D006134 5.7e-92 341.7 191 84.8
Actinidia40404 Actinidia chinensis HOM05D004410 ORTHO05D006134 1.6e-91 340.1 292 61.0
TPR.G26767 Trifolium pratense HOM05D004410 ORTHO05D006134 2.8e-91 339.3 293 58.7
BraA03t10599Z Brassica rapa HOM05D004410 ORTHO05D006134 1.5e-89 333.6 259 66.0
CANSAT78G0098 Cannabis sativa HOM05D004410 ORTHO05D006134 1.5e-89 333.6 270 64.1
Dinv25402 Davidia involucrata HOM05D004410 ORTHO05D006134 1.5e-89 333.6 208 79.3
Atru.chr12.1677 Acer truncatum HOM05D004410 ORTHO05D006134 2.6e-89 332.8 292 62.3
Medtr4g127640 Medicago truncatula HOM05D004410 ORTHO05D006134 6.5e-88 328.2 239 68.2
Cre09.g398104 Chlamydomonas reinhardtii HOM05D004410 ORTHO05D006134 9.4e-87 324.3 283 59.4
CBR_g3667 Chara braunii HOM05D004410 ORTHO05D006134 2.7e-86 322.8 288 61.1
CAN.G65.105 Capsicum annuum HOM05D004410 ORTHO05D006134 1.9e-79 300.1 184 75.5
MCO01G124 Micromonas commoda HOM05D004410 ORTHO05D006134 9.7e-76 287.7 291 51.2
PRCOL_00001013 Prasinoderma coloniale HOM05D004410 ORTHO05D006134 2.2e-75 286.6 297 52.5
AagrBONN_evm.TU.Sc2ySwM_344.3468 Anthoceros agrestis HOM05D004410 ORTHO05D006134 4.8e-75 285.4 191 69.1
MBI13_g31549_MAGBIO Magnolia biondii HOM05D004410 ORTHO05D006134 1.2e-70 270.8 205 66.3
Haze_27417 Corylus avellana HOM05D004410 ORTHO05D006134 3.6e-70 269.2 291 51.2
Nitab4.5_0000033g0380 Nicotiana tabacum HOM05D004410 ORTHO05D006134 1.4e-61 240.7 287 48.8
BcaC03g14169 Brassica carinata HOM05D004410 ORTHO05D006134 1.1e-55 221.1 293 47.1
C02p14420 Brassica napus HOM05D004410 ORTHO05D006134 1.1e-55 221.1 293 47.1
BolC2t07566H Brassica oleracea HOM05D004410 ORTHO05D006134 1.1e-55 221.1 293 47.1
Cfa026974 Carpinus fangiana HOM05D004410 ORTHO05D006134 2.0e-52 210.3 260 50.4
TAR383G0389 Trochodendron aralioides HOM05D004410 ORTHO05D006134 3.6e-46 189.5 105 85.7
CANSAT78G0925 Cannabis sativa HOM05D004410 ORTHO05D006134 9.8e-44 181.4 108 79.6
Peaxi162Scf03693g00003 Petunia axillaris HOM05D004410 ORTHO05D006134 1.6e-41 174.1 225 45.8
CANSAT78G2262 Cannabis sativa HOM05D004410 ORTHO05D006134 8.0e-38 161.8 150 56.7
Ca_20535_v3 Cicer arietinum L. HOM05D004410 ORTHO05D034587 3.1e-37 159.8 154 57.1
Ca_20536_v3 Cicer arietinum L. HOM05D004410 ORTHO05D034587 8.9e-37 158.3 154 56.5
Ca_30867_v3 Cicer arietinum L. HOM05D004410 ORTHO05D034587 8.9e-37 158.3 154 56.5
PSO210G2992 Papaver somniferum HOM05D004410 ORTHO05D006134 1.9e-34 150.6 85 84.7
MCO02G313 Micromonas commoda HOM05D004410 ORTHO05D006134 4.1e-34 149.4 194 41.8
TAR383G0746 Trochodendron aralioides HOM05D004410 ORTHO05D006134 1.7e-32 144.1 106 68.9
CDE02G0278 Ceratophyllum demersum HOM05D004410 ORTHO05D006134 7.5e-28 128.6 107 64.5
C03p79720 Brassica napus HOM05D004410 ORTHO05D027626 5.4e-26 122.5 73 76.7
BolC5t31886H Brassica oleracea HOM05D004410 ORTHO05D027626 5.4e-26 122.5 73 76.7
BcaC05g27254 Brassica carinata HOM05D004410 ORTHO05D027626 2.1e-25 120.6 72 76.4
Glyma.17G179900 Glycine max HOM05D004410 ORTHO05D027626 9.5e-23 111.7 79 70.9
Cfa002344 Carpinus fangiana HOM05D000705 ORTHO05D004052 2.3e-21 107.1 93 62.4
Psat2g093080 Pisum sativum HOM05D000872 ORTHO05D000777 4.4e-20 102.8 85 62.4
Ca_20516_v3 Cicer arietinum L. HOM05D004410 ORTHO05D147600 5.4e-18 95.9 132 41.7
A02p08640 Brassica napus HOM05D004410 ORTHO05D097625 6.6e-16 89.0 185 38.4
PSO724G1151 Papaver somniferum HOM05D004410 ORTHO05D305184 1.9e-15 87.4 86 54.7
Medtr4g007390 Medicago truncatula HOM05D004410 ORTHO05D006134 8.1e-14 82.0 59 64.4
PRCOL_00005471 Prasinoderma coloniale HOM05D004553 ORTHO05D005426 1.8e-13 80.9 231 31.2
GSVIVG01006242001 Vitis vinifera HOM05D004410 ORTHO05D006134 2.0e-12 77.4 58 65.5
GSVIVG01012952001 Vitis vinifera HOM05D004410 ORTHO05D439300 2.8e-06 57.0 41 61.0


User provided reference genes

Program Settings