Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C007854.2 Cucumis melo HOM05D004674 ORTHO05D007261 2.7e-272 941.4 487 100.0
CsaV3_6G046560 Cucumis sativus L. HOM05D004674 ORTHO05D007261 1.0e-226 790.0 697 66.1
ClCG01G019830 Citrullus lanatus HOM05D004674 ORTHO05D007261 9.2e-212 740.3 736 60.1
Sed0001139 Sechium edule HOM05D004674 ORTHO05D007261 4.3e-209 731.5 696 60.5
QL06p035429 Quercus lobata HOM05D004674 ORTHO05D007261 6.4e-189 664.5 696 55.3
QL06p035418 Quercus lobata HOM05D004674 ORTHO05D007261 1.9e-188 662.9 696 55.6
CiPaw.07G049300 Carya illinoinensis HOM05D004674 ORTHO05D007261 1.0e-186 657.1 690 54.6
Haze_03856 Corylus avellana HOM05D004674 ORTHO05D007261 8.7e-186 654.1 690 54.3
Cfa006896 Carpinus fangiana HOM05D004674 ORTHO05D007261 3.6e-184 648.7 690 54.3
TAR376G0875 Trochodendron aralioides HOM05D004674 ORTHO05D007261 1.1e-183 647.1 691 54.3
GSVIVG01018892001 Vitis vinifera HOM05D004674 ORTHO05D007261 2.0e-182 642.9 692 53.6
COL.COLO4_22030 Corchorus olitorius HOM05D004674 ORTHO05D007261 1.7e-181 639.8 691 53.7
Ciclev10024970m.g Citrus clementina HOM05D004674 ORTHO05D007261 3.8e-181 638.6 689 54.9
Duzib264G1222 Durio zibethinus HOM05D004674 ORTHO05D007261 4.9e-181 638.3 691 53.5
CANSAT01G1299 Cannabis sativa HOM05D004674 ORTHO05D007261 1.9e-180 636.3 697 53.9
PGR119G1113 Punica granatum HOM05D004674 ORTHO05D007261 1.9e-180 636.3 689 53.0
PGSC0003DMG400015491 Solanum tuberosum HOM05D004674 ORTHO05D007261 1.9e-180 636.3 699 54.1
AT5G66420 Arabidopsis thaliana HOM05D004674 ORTHO05D007261 3.2e-180 635.6 693 53.7
Gorai.007G201200 Gossypium raimondii HOM05D004674 ORTHO05D007261 4.2e-180 635.2 693 53.0
Prupe.7G158600 Prunus persica HOM05D004674 ORTHO05D007261 4.2e-180 635.2 693 53.1
Cpa.g.sc6.166 Carica papaya HOM05D004674 ORTHO05D007261 5.5e-180 634.8 697 53.2
FAN28G0143 Fragaria x ananassa HOM05D004674 ORTHO05D007261 5.5e-180 634.8 673 54.4
Sopen02g013570 Solanum pennellii HOM05D004674 ORTHO05D007261 2.7e-179 632.5 699 54.1
Solyc02g062560.3 Solanum lycopersicum HOM05D004674 ORTHO05D007261 3.5e-179 632.1 699 53.8
CAN.G1019.6 Capsicum annuum HOM05D004674 ORTHO05D007261 6.0e-179 631.3 700 53.9
Gohir.D11G189100 Gossypium hirsutum HOM05D004674 ORTHO05D007261 1.0e-178 630.6 701 52.4
Gohir.A11G182300 Gossypium hirsutum HOM05D004674 ORTHO05D007261 1.3e-178 630.2 693 53.0
Potri.007G021000 Populus trichocarpa HOM05D004674 ORTHO05D007261 3.0e-178 629.0 692 53.9
FAN19G2260 Fragaria x ananassa HOM05D004674 ORTHO05D007261 3.9e-178 628.6 676 53.8
SalBow8G5199 Salvia bowleyana HOM05D004674 ORTHO05D007261 8.7e-178 627.5 697 52.4
Oeu019445.1 Olea europaea HOM05D004674 ORTHO05D007261 1.1e-177 627.1 696 52.9
Sabra07G0018000 Salix brachista HOM05D004674 ORTHO05D007261 1.1e-177 627.1 692 53.3
SalBow8G1271 Salvia bowleyana HOM05D004674 ORTHO05D007261 1.5e-177 626.7 697 52.2
VMungo0251G2099 Vigna mungo HOM05D004674 ORTHO05D007261 1.9e-177 626.3 698 52.0
Cc07_g09910 Coffea canephora HOM05D004674 ORTHO05D007261 3.3e-177 625.5 692 52.5
Atru.chr3.699 Acer truncatum HOM05D004674 ORTHO05D007261 4.3e-177 625.2 693 53.7
Peaxi162Scf00008g03325 Petunia axillaris HOM05D004674 ORTHO05D007261 4.3e-177 625.2 682 53.5
FAN26G2871 Fragaria x ananassa HOM05D004674 ORTHO05D007261 5.6e-177 624.8 697 52.4
TWI09G0339 Tripterygium wilfordii HOM05D004674 ORTHO05D007261 5.6e-177 624.8 697 52.2
CARHR034750 Cardamine hirsuta HOM05D004674 ORTHO05D007261 7.4e-177 624.4 684 53.5
Aqoxy5G01578 Aquilegia oxysepala HOM05D004674 ORTHO05D007261 1.3e-176 623.6 694 53.0
Manes.02G097100 Manihot esculenta HOM05D004674 ORTHO05D007261 2.8e-176 622.5 617 57.7
THA.LOC104821303 Tarenaya hassleriana HOM05D004674 ORTHO05D007261 2.8e-176 622.5 690 52.0
AL8G45110 Arabidopsis lyrata HOM05D004674 ORTHO05D007261 8.1e-176 620.9 698 52.4
Sc16g0002550 Simmondsia chinensis HOM05D004674 ORTHO05D007261 1.4e-175 620.2 683 53.0
RcHm_v2.0_Chr2g0100861 Rosa chinensis HOM05D004674 ORTHO05D007261 2.4e-175 619.4 694 51.6
Lalb_Chr16g0391041 Lupinus albus HOM05D004674 ORTHO05D007261 1.2e-174 617.1 697 52.8
Nitab4.5_0000136g0250 Nicotiana tabacum HOM05D004674 ORTHO05D007261 2.0e-174 616.3 714 52.1
Migut.H02523 Erythranthe guttata HOM05D004674 ORTHO05D007261 2.6e-174 615.9 703 52.1
HanXRQChr09g0261191 Helianthus annuus HOM05D004674 ORTHO05D007261 5.8e-174 614.8 684 52.8
TPR.G21548 Trifolium pratense HOM05D004674 ORTHO05D007261 2.9e-173 612.5 689 51.7
Carub.0008s2809 Capsella rubella HOM05D004674 ORTHO05D007261 3.8e-173 612.1 698 52.0
Glyma.02G053800 Glycine max HOM05D004674 ORTHO05D007261 3.8e-173 612.1 689 52.0
SGA_v2.0_scaffold12G06320 Striga asiatica HOM05D004674 ORTHO05D007261 3.8e-173 612.1 688 52.2
MSTRG.2485 Avicennia marina HOM05D004674 ORTHO05D007261 6.5e-173 611.3 692 52.0
CSS0017426 Camellia sinensis var. sinensis HOM05D004674 ORTHO05D007261 1.1e-172 610.5 680 53.5
DCAR_017308 Daucus carota HOM05D004674 ORTHO05D007261 1.9e-172 609.8 688 52.0
Lsat_1_v5_gn_4_148020 Lactuca sativa HOM05D004674 ORTHO05D007261 3.2e-172 609.0 688 51.2
Medtr8g076950 Medicago truncatula HOM05D004674 ORTHO05D007261 3.2e-172 609.0 697 51.1
FAN23G0750 Fragaria x ananassa HOM05D004674 ORTHO05D007261 9.3e-172 607.4 702 51.6
ECA232G2544 Erigeron canadensis HOM05D004674 ORTHO05D000001 1.2e-171 607.1 680 51.9
MD15G1256300 Malus domestica HOM05D004674 ORTHO05D007261 1.6e-171 606.7 696 51.3
Lj4g0022194 Lotus japonicus HOM05D004674 ORTHO05D007261 2.1e-171 606.3 699 51.5
Thhalv10003695m.g Eutrema salsugineum HOM05D004674 ORTHO05D007261 2.7e-171 605.9 694 51.6
C07p25500 Brassica napus HOM05D004674 ORTHO05D007261 6.0e-171 604.7 683 51.8
Eucgr.I02404 Eucalyptus grandis HOM05D004674 ORTHO05D007261 6.0e-171 604.7 689 51.2
BcaC06g34697 Brassica carinata HOM05D004674 ORTHO05D007261 1.0e-170 604.0 682 51.9
BolC7t43070H Brassica oleracea HOM05D004674 ORTHO05D007261 1.3e-170 603.6 683 51.8
AUR62007603 Chenopodium quinoa HOM05D004674 ORTHO05D007261 1.3e-170 603.6 690 50.6
BcaB02g10033 Brassica carinata HOM05D004674 ORTHO05D007261 1.8e-170 603.2 686 51.9
A07p17540 Brassica napus HOM05D004674 ORTHO05D007261 1.8e-170 603.2 682 51.8
PSO170G5809 Papaver somniferum HOM05D004674 ORTHO05D007261 2.3e-170 602.8 692 51.0
Rhsim08G0121400 Rhododendron simsii HOM05D004674 ORTHO05D007261 3.0e-170 602.4 733 50.3
arahy.Tifrunner.gnm1.ann1.SG067W Arachis hypogaea HOM05D004674 ORTHO05D007261 3.9e-170 602.1 697 51.2
arahy.Tifrunner.gnm1.ann1.LKR1Y0 Arachis hypogaea HOM05D004674 ORTHO05D007261 1.5e-169 600.1 697 50.9
BraA07t29474Z Brassica rapa HOM05D004674 ORTHO05D007261 1.9e-169 599.7 682 51.3
EL10As8g23909 Beta vulgaris HOM05D004674 ORTHO05D007261 2.1e-168 596.3 691 50.2
Ca_22335_v3 Cicer arietinum L. HOM05D004674 ORTHO05D007261 3.7e-168 595.5 684 50.9
AUR62004091 Chenopodium quinoa HOM05D004674 ORTHO05D007261 1.1e-167 594.0 690 50.3
Nn5g29687 Nelumbo nucifera HOM05D004674 ORTHO05D007261 6.9e-167 591.3 687 51.4
HPP92_004908 Vanilla planifolia HOM05D004674 ORTHO05D007261 1.5e-166 590.1 697 49.9
Hund16446 Selenicereus undatus HOM05D004674 ORTHO05D007261 4.5e-166 588.6 719 49.2
Lj4A206G17 Lonicera japonica HOM05D004674 ORTHO05D007261 7.6e-166 587.8 651 53.0
unitig_60.g25534 Utricularia gibba HOM05D004674 ORTHO05D007261 7.6e-166 587.8 679 50.7
Nitab4.5_0001525g0030 Nicotiana tabacum HOM05D004674 ORTHO05D007261 2.9e-165 585.9 641 54.0
Os06g0472400 Oryza sativa ssp. japonica HOM05D004674 ORTHO05D007261 2.4e-159 566.2 687 49.1
Zm00001eb225760 Zea mays HOM05D004674 ORTHO05D007261 4.5e-158 562.0 680 47.8
FvH4_1g12760 Fragaria vesca HOM05D004674 ORTHO05D007261 1.1e-153 547.4 576 54.9
Aa31LG1G14940 Aethionema arabicum HOM05D004674 ORTHO05D007261 2.0e-153 546.6 652 50.9
ATR0568G133 Amborella trichopoda HOM05D004674 ORTHO05D007261 4.5e-150 535.4 648 48.9
Phvul.003G256400 Phaseolus vulgaris HOM05D004674 ORTHO05D007261 2.2e-149 533.1 595 51.9
Sp2g30300 Schrenkiella parvula HOM05D004674 ORTHO05D007261 3.2e-148 529.3 596 51.7
SEGI_40838 Sequoiadendron giganteum HOM05D004674 ORTHO05D007261 7.2e-140 501.5 779 41.3
TAR376G0765 Trochodendron aralioides HOM05D004674 ORTHO05D007261 3.3e-137 492.7 617 48.1
SMO367G0601 Selaginella moellendorffii HOM05D004674 ORTHO05D007261 5.9e-134 481.9 685 43.9
Pp3c20_8030 Physcomitrium patens HOM05D004674 ORTHO05D007261 1.0e-133 481.1 681 42.1
Thecc.01G030000 Theobroma cacao HOM05D004674 ORTHO05D007261 6.4e-112 408.7 553 45.6
Psat4g095640 Pisum sativum HOM05D004674 ORTHO05D007261 3.2e-111 406.4 605 43.0
TAR376G0038 Trochodendron aralioides HOM05D004674 ORTHO05D007261 7.0e-111 405.2 556 45.9
Potri.005G120100 Populus trichocarpa HOM05D004674 ORTHO05D007261 9.8e-105 384.8 281 70.1
COL.COLO4_22029 Corchorus olitorius HOM05D004674 ORTHO05D007261 8.3e-104 381.7 278 69.4
Actinidia35628 Actinidia chinensis HOM05D004674 ORTHO05D007261 4.6e-102 375.9 477 48.0
Atru.chr3.652 Acer truncatum HOM05D004674 ORTHO05D007261 1.7e-101 374.0 281 71.2
MELO3C010392.2 Cucumis melo HOM05D004674 ORTHO05D007261 5.2e-98 362.5 420 55.7
Dinv40019 Davidia involucrata HOM05D004674 ORTHO05D007261 4.9e-96 355.9 195 90.8
TAR376G0961 Trochodendron aralioides HOM05D004674 ORTHO05D007261 3.9e-93 346.3 511 44.0
Gohir.A11G182500 Gossypium hirsutum HOM05D004674 ORTHO05D007261 3.3e-92 343.2 280 62.9
PSO170G6195 Papaver somniferum HOM05D004674 ORTHO05D007261 2.6e-89 333.6 297 58.6
TWI09G0580 Tripterygium wilfordii HOM05D004674 ORTHO05D007261 5.8e-89 332.4 314 59.2
PSO407G0425 Papaver somniferum HOM05D004674 ORTHO05D007261 2.4e-87 327.0 286 58.4
AagrBONN_evm.TU.Sc2ySwM_344.2833 Anthoceros agrestis HOM05D004674 ORTHO05D007261 1.2e-81 308.1 562 36.8
MD02G1142700 Malus domestica HOM05D004674 ORTHO05D007261 1.1e-79 301.6 224 72.8
Actinidia19204 Actinidia chinensis HOM05D004674 ORTHO05D007261 7.1e-79 298.9 281 58.0
Psat0s3062g0040 Pisum sativum HOM05D004674 ORTHO05D007261 8.7e-77 292.0 170 84.1
Glyma.16G133867 Glycine max HOM05D004674 ORTHO05D007261 3.4e-73 280.0 165 83.6
Gorai.007G201400 Gossypium raimondii HOM05D004674 ORTHO05D007261 3.4e-73 280.0 214 64.5
Gohir.D11G189150 Gossypium hirsutum HOM05D004674 ORTHO05D007261 6.4e-72 275.8 214 64.0
Zm00001eb124970 Zea mays HOM05D004674 ORTHO05D007261 7.6e-65 252.3 160 78.8
Atru.chr3.653 Acer truncatum HOM05D004674 ORTHO05D007261 6.9e-42 176.0 97 85.6
Zm00001eb098830 Zea mays HOM05D004674 ORTHO05D007261 6.5e-40 169.5 118 69.5
vmacro19462 Vaccinium macrocarpon HOM05D004674 ORTHO05D007261 6.1e-30 136.3 81 86.4
MD02G1142800 Malus domestica HOM05D004674 ORTHO05D020551 1.2e-25 122.1 88 72.7
Dinv40102 Davidia involucrata HOM05D004674 ORTHO05D020551 1.0e-24 119.0 68 83.8
Psat2g002040 Pisum sativum HOM05D004674 ORTHO05D327579 1.3e-24 118.6 132 50.0
TAR376G0549 Trochodendron aralioides HOM05D004674 ORTHO05D007261 2.9e-24 117.5 73 79.5
SEGI_19277 Sequoiadendron giganteum HOM05D004674 ORTHO05D020551 1.9e-23 114.8 90 60.0
MD02G1142900 Malus domestica HOM05D004674 ORTHO05D007261 1.8e-21 108.2 145 46.9
Zm00001eb135660 Zea mays HOM05D004674 ORTHO05D007261 1.7e-19 101.7 59 86.4
Zm00001eb334700 Zea mays HOM05D004674 ORTHO05D007261 8.2e-19 99.4 71 67.6
FAN23G1600 Fragaria x ananassa HOM05D004674 ORTHO05D045629 2.2e-16 91.3 169 35.5
QL03p066021 Quercus lobata HOM05D004674 ORTHO05D029177 3.8e-16 90.5 73 63.0
HanXRQChr08g0221331 Helianthus annuus HOM05D004674 ORTHO05D021509 6.5e-16 89.7 61 75.4
GSVIVG01017515001 Vitis vinifera HOM05D004674 ORTHO05D020551 1.5e-15 88.6 53 71.7
GSVIVG01005333001 Vitis vinifera HOM05D004674 ORTHO05D020551 1.6e-14 85.1 53 67.9
Psat4g095680 Pisum sativum HOM05D004674 ORTHO05D007261 6.1e-14 83.2 49 85.7
Duzib147G1548 Durio zibethinus HOM05D004674 ORTHO05D007261 1.8e-13 81.6 49 85.7
FAN14G4531 Fragaria x ananassa HOM05D004674 ORTHO05D020551 6.8e-13 79.7 73 60.3
MELO3C028160.2 Cucumis melo HOM05D004674 ORTHO05D029175 4.5e-09 67.0 36 94.4
MELO3C001880.2 Cucumis melo HOM05D004674 ORTHO05D029175 2.1e-06 58.2 29 100.0
MELO3C028263.2 Cucumis melo HOM05D004674 ORTHO05D029175 2.1e-06 58.2 29 100.0
Duzib248G0237 Durio zibethinus HOM05D004674 ORTHO05D020551 2.1e-06 58.2 33 78.8
MELO3C028166.2 Cucumis melo HOM05D004674 ORTHO05D029175 6.1e-06 56.6 29 96.6


User provided reference genes

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