Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C007369.2 Cucumis melo HOM05D006314 ORTHO05D007970 1.2e-123 446.8 276 100.0
CsaV3_6G049280 Cucumis sativus L. HOM05D006314 ORTHO05D007970 3.4e-110 402.1 273 91.6
ClCG01G022220 Citrullus lanatus HOM05D006314 ORTHO05D007970 3.1e-103 379.0 280 86.8
QL05p075316 Quercus lobata HOM05D006314 ORTHO05D007970 3.6e-72 275.8 245 71.4
Gorai.010G176200 Gossypium raimondii HOM05D006314 ORTHO05D007970 2.4e-68 263.1 258 66.3
Potri.004G039400 Populus trichocarpa HOM05D006314 ORTHO05D007970 2.4e-68 263.1 230 69.6
Gohir.A06G145000 Gossypium hirsutum HOM05D006314 ORTHO05D007970 7.1e-68 261.5 258 61.6
CiPaw.09G086300 Carya illinoinensis HOM05D006314 ORTHO05D007970 3.5e-67 259.2 231 68.0
Prupe.4G027100 Prunus persica HOM05D006314 ORTHO05D007970 3.5e-67 259.2 214 74.3
COL.COLO4_31719 Corchorus olitorius HOM05D006314 ORTHO05D007970 6.0e-67 258.5 257 66.5
CiPaw.09G085200 Carya illinoinensis HOM05D006314 ORTHO05D007970 1.0e-66 257.7 241 65.1
GSVIVG01012621001 Vitis vinifera HOM05D006314 ORTHO05D007970 1.0e-66 257.7 241 65.1
AL6G48810 Arabidopsis lyrata HOM05D006314 ORTHO05D007970 1.8e-66 256.9 274 58.0
ECA236G4636 Erigeron canadensis HOM05D006314 ORTHO05D007970 2.3e-66 256.5 212 72.2
Lsat_1_v5_gn_7_17861 Lactuca sativa HOM05D006314 ORTHO05D007970 1.5e-65 253.8 249 69.1
Manes.14G141100 Manihot esculenta HOM05D006314 ORTHO05D007970 1.5e-65 253.8 221 73.3
Cfa021643 Carpinus fangiana HOM05D006314 ORTHO05D007970 4.3e-65 252.3 286 60.5
HanXRQChr05g0130041 Helianthus annuus HOM05D006314 ORTHO05D007970 3.7e-64 249.2 253 67.6
EL10Ac8g19905 Beta vulgaris HOM05D006314 ORTHO05D007970 1.8e-63 246.9 267 62.2
SGA_v2.0_scaffold7G03887 Striga asiatica HOM05D006314 ORTHO05D007970 3.1e-63 246.1 214 72.0
MD05G1340500 Malus domestica HOM05D006314 ORTHO05D007970 1.2e-62 244.2 244 68.0
Duzib235G0913 Durio zibethinus HOM05D006314 ORTHO05D007970 1.5e-62 243.8 266 57.1
Glyma.01G240700 Glycine max HOM05D006314 ORTHO05D007970 2.9e-61 239.6 214 75.7
SEGI_37493 Sequoiadendron giganteum HOM05D006314 ORTHO05D007970 2.9e-61 239.6 209 62.7
Aqoxy5G01372 Aquilegia oxysepala HOM05D006314 ORTHO05D007970 8.4e-61 238.0 258 60.9
CANSAT56G1066 Cannabis sativa HOM05D006314 ORTHO05D007970 8.4e-61 238.0 232 69.4
SalBow8G4748 Salvia bowleyana HOM05D006314 ORTHO05D007970 1.4e-60 237.3 242 61.6
Ciclev10018286m.g Citrus clementina HOM05D006314 ORTHO05D007970 1.9e-60 236.9 214 73.8
Ah.14g088200 Amaranthus hybridus HOM05D006314 ORTHO05D007970 3.2e-60 236.1 214 65.4
Medtr7g047630 Medicago truncatula HOM05D006314 ORTHO05D007970 1.2e-59 234.2 273 64.8
Medtr7g451810 Medicago truncatula HOM05D006314 ORTHO05D007970 1.2e-59 234.2 273 64.8
ATR0618G448 Amborella trichopoda HOM05D006314 ORTHO05D007970 1.6e-59 233.8 249 62.2
Sabra04G0024200 Salix brachista HOM05D006314 ORTHO05D007970 3.5e-59 232.6 272 50.7
VMungo1215G0781 Vigna mungo HOM05D006314 ORTHO05D007970 7.9e-59 231.5 214 74.8
Lj1A1224T36 Lonicera japonica HOM05D006314 ORTHO05D007970 1.8e-58 230.3 213 75.1
Nn1g03656 Nelumbo nucifera HOM05D006314 ORTHO05D007970 1.8e-58 230.3 241 61.4
Phvul.002G049200 Phaseolus vulgaris HOM05D006314 ORTHO05D007970 1.8e-58 230.3 261 63.2
Haze_06726 Corylus avellana HOM05D006314 ORTHO05D007970 2.3e-58 229.9 339 48.4
Migut.M01276 Erythranthe guttata HOM05D006314 ORTHO05D007970 2.3e-58 229.9 214 69.6
Lj1g0010466 Lotus japonicus HOM05D006314 ORTHO05D007970 6.7e-58 228.4 278 61.2
Thecc.06G213300 Theobroma cacao HOM05D006314 ORTHO05D007970 6.7e-58 228.4 203 67.5
Hund21374 Selenicereus undatus HOM05D006314 ORTHO05D007970 8.7e-58 228.0 211 59.7
CAN.G404.73 Capsicum annuum HOM05D006314 ORTHO05D007970 1.5e-57 227.3 211 65.9
Actinidia05538 Actinidia chinensis HOM05D006314 ORTHO05D007970 1.9e-57 226.9 234 69.2
Ca_07429_v3 Cicer arietinum L. HOM05D006314 ORTHO05D007970 7.4e-57 224.9 214 71.5
Gohir.D06G151200 Gossypium hirsutum HOM05D006314 ORTHO05D007970 1.3e-56 224.2 204 57.4
AT4G05210 Arabidopsis thaliana HOM05D006314 ORTHO05D007970 1.6e-56 223.8 257 56.0
PGR031G0385 Punica granatum HOM05D006314 ORTHO05D007970 1.6e-56 223.8 259 61.4
AL7G32880 Arabidopsis lyrata HOM05D006314 ORTHO05D007970 2.8e-56 223.0 239 58.2
MBI02_g34312_MAGBIO Magnolia biondii HOM05D006314 ORTHO05D007970 6.2e-56 221.9 214 73.4
RcHm_v2.0_Chr5g0004131 Rosa chinensis HOM05D006314 ORTHO05D007970 6.2e-56 221.9 259 61.4
BcaC04g21385 Brassica carinata HOM05D006314 ORTHO05D007970 8.2e-56 221.5 215 61.9
C09p32430 Brassica napus HOM05D006314 ORTHO05D007970 8.2e-56 221.5 215 61.9
BolC9t56088H Brassica oleracea HOM05D006314 ORTHO05D007970 8.2e-56 221.5 215 61.9
A09p25520 Brassica napus HOM05D006314 ORTHO05D007970 1.1e-55 221.1 215 61.4
Cpa.g.sc81.24 Carica papaya HOM05D006314 ORTHO05D007970 1.8e-55 220.3 241 57.7
Eucgr.D00832 Eucalyptus grandis HOM05D006314 ORTHO05D007970 2.4e-55 219.9 236 64.4
TPR.G10185 Trifolium pratense HOM05D006314 ORTHO05D007970 3.1e-55 219.5 214 71.5
AT4G21220 Arabidopsis thaliana HOM05D006314 ORTHO05D007970 4.0e-55 219.2 258 55.8
BraA09t38127Z Brassica rapa HOM05D006314 ORTHO05D007970 4.0e-55 219.2 215 61.4
Carub.0007s2019 Capsella rubella HOM05D006314 ORTHO05D007970 5.3e-55 218.8 282 54.6
FvH4_3g02730 Fragaria vesca HOM05D006314 ORTHO05D007970 5.3e-55 218.8 214 70.6
CARHR227820 Cardamine hirsuta HOM05D006314 ORTHO05D007970 9.0e-55 218.0 229 68.6
BcaB01g01893 Brassica carinata HOM05D006314 ORTHO05D007970 2.6e-54 216.5 214 60.7
HPP92_009390 Vanilla planifolia HOM05D006314 ORTHO05D007970 1.0e-53 214.5 257 58.0
Thhalv10025838m.g Eutrema salsugineum HOM05D006314 ORTHO05D007970 1.3e-53 214.2 283 58.0
HPP92_009395 Vanilla planifolia HOM05D006314 ORTHO05D007970 3.8e-53 212.6 236 61.4
Haze_06729 Corylus avellana HOM05D006314 ORTHO05D007970 1.4e-52 210.7 152 80.3
PSO541G6217 Papaver somniferum HOM05D006314 ORTHO05D007970 5.5e-52 208.8 260 55.0
PSO675G3227 Papaver somniferum HOM05D006314 ORTHO05D007970 5.5e-52 208.8 260 55.0
Actinidia26953 Actinidia chinensis HOM05D006314 ORTHO05D007970 1.2e-51 207.6 149 76.5
Sed0025568 Sechium edule HOM05D006314 ORTHO05D007970 3.5e-51 206.1 276 60.5
Cc00_g17320 Coffea canephora HOM05D006314 ORTHO05D007970 6.0e-51 205.3 273 60.4
FAN21G1433 Fragaria x ananassa HOM05D006314 ORTHO05D007970 6.0e-51 205.3 232 53.4
Lalb_Chr16g0376341 Lupinus albus HOM05D006314 ORTHO05D007970 5.1e-50 202.2 221 68.8
Solyc03g031560.4 Solanum lycopersicum HOM05D006314 ORTHO05D007970 5.1e-50 202.2 225 56.0
AUR62012635 Chenopodium quinoa HOM05D006314 ORTHO05D007970 1.1e-49 201.1 258 58.1
DCAR_004187 Daucus carota HOM05D006314 ORTHO05D007970 3.3e-49 199.5 252 57.9
Aa31LG9G9230 Aethionema arabicum HOM05D006314 ORTHO05D007970 4.3e-49 199.1 215 60.5
Oeu002711.1 Olea europaea HOM05D006314 ORTHO05D007970 1.3e-48 197.6 222 59.9
THA.LOC104812945 Tarenaya hassleriana HOM05D006314 ORTHO05D007970 2.2e-48 196.8 214 66.4
arahy.Tifrunner.gnm1.ann1.937J55 Arachis hypogaea HOM05D006314 ORTHO05D007970 4.8e-48 195.7 216 68.5
arahy.Tifrunner.gnm1.ann1.PEH28W Arachis hypogaea HOM05D006314 ORTHO05D007970 4.8e-48 195.7 216 68.5
Sopen03g005440 Solanum pennellii HOM05D006314 ORTHO05D007970 4.8e-48 195.7 251 60.2
CDE05G2602 Ceratophyllum demersum HOM05D006314 ORTHO05D007970 6.3e-48 195.3 214 56.1
Mapoly0013s0096 Marchantia polymorpha HOM05D006314 ORTHO05D007970 8.2e-48 194.9 210 58.1
vmacro03713 Vaccinium macrocarpon HOM05D006314 ORTHO05D007970 1.2e-46 191.0 164 65.2
FAN25G2977 Fragaria x ananassa HOM05D006314 ORTHO05D007970 4.5e-46 189.1 263 49.4
Sc05g0008810 Simmondsia chinensis HOM05D006314 ORTHO05D007970 1.7e-45 187.2 240 60.0
AagrBONN_evm.TU.Sc2ySwM_228.2540 Anthoceros agrestis HOM05D006314 ORTHO05D007970 4.2e-44 182.6 214 60.7
Zm00001eb306890 Zea mays HOM05D006314 ORTHO05D007970 4.2e-44 182.6 230 62.6
Rhsim13G0158200 Rhododendron simsii HOM05D006314 ORTHO05D007970 5.5e-44 182.2 228 56.6
Nitab4.5_0004428g0040 Nicotiana tabacum HOM05D006314 ORTHO05D007970 1.6e-43 180.6 272 42.6
Dinv17838 Davidia involucrata HOM05D006314 ORTHO05D007970 3.6e-43 179.5 201 57.2
Psat3g152680 Pisum sativum HOM05D006314 ORTHO05D007970 1.0e-42 177.9 166 65.1
Hma1.2p1_0729F.1_g209630 Hydrangea macrophylla HOM05D006314 ORTHO05D007970 2.3e-42 176.8 170 52.9
Sp6g03780 Schrenkiella parvula HOM05D006314 ORTHO05D007970 3.9e-42 176.0 215 63.3
CBR_g20160 Chara braunii HOM05D006314 ORTHO05D007970 7.4e-41 171.8 146 72.6
PGSC0003DMG400005049 Solanum tuberosum HOM05D006314 ORTHO05D007970 9.7e-41 171.4 160 63.1
TWI38G0264 Tripterygium wilfordii HOM05D006314 ORTHO05D007970 6.3e-40 168.7 247 49.4
Nitab4.5_0000900g0100 Nicotiana tabacum HOM05D006314 ORTHO05D007970 6.9e-39 165.2 272 48.2
AUR62022021 Chenopodium quinoa HOM05D006314 ORTHO05D007970 8.5e-37 158.3 260 45.0
Glyma.11G002900 Glycine max HOM05D006314 ORTHO05D007970 1.1e-36 157.9 151 57.0
unitig_748.g7139 Utricularia gibba HOM05D006350 ORTHO05D007850 3.5e-30 136.3 149 49.7
Pp3c4_25780 Physcomitrium patens HOM05D006314 ORTHO05D007970 5.0e-29 132.5 148 59.5
Nn5g27983 Nelumbo nucifera HOM05D006314 ORTHO05D007970 4.2e-28 129.4 107 58.9
MSTRG.16127 Avicennia marina HOM05D006314 ORTHO05D007970 7.2e-28 128.6 111 57.7
SMO004G0010 Selaginella moellendorffii HOM05D006314 ORTHO05D007970 8.0e-27 125.2 214 46.3
CSS0045332 Camellia sinensis var. sinensis HOM05D006314 ORTHO05D007970 3.9e-26 122.9 112 75.0
PRCOL_00005452 Prasinoderma coloniale HOM05D006314 ORTHO05D007970 6.7e-26 122.1 219 49.8
TAR627G0699 Trochodendron aralioides HOM05D006314 ORTHO05D007970 1.4e-23 114.4 91 76.9
Peaxi162Scf00781g00047 Petunia axillaris HOM05D006314 ORTHO05D007970 7.0e-23 112.1 151 59.6
CSS0018641 Camellia sinensis var. sinensis HOM05D006314 ORTHO05D007970 1.1e-20 104.8 104 65.4
SMO361G0013 Selaginella moellendorffii HOM05D006314 ORTHO05D007970 3.2e-20 103.2 215 42.8
Os07g0134400 Oryza sativa ssp. japonica HOM05D006314 ORTHO05D007970 1.3e-16 91.3 139 48.2
FAN25G3594 Fragaria x ananassa HOM05D006314 ORTHO05D007970 3.0e-10 70.1 43 69.8
MD10G1313900 Malus domestica HOM05D006314 ORTHO05D030082 9.8e-09 65.1 51 60.8
Lsat_1_v5_gn_5_88320 Lactuca sativa HOM05D006314 ORTHO05D007970 1.4e-07 61.2 87 36.8
QL05p075461 Quercus lobata HOM05D006314 ORTHO05D030082 2.4e-07 60.5 53 50.9
QL08p032503 Quercus lobata HOM05D006314 ORTHO05D030082 5.9e-06 55.8 100 34.0


User provided reference genes

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