Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C006233.2 Cucumis melo HOM05D006268 ORTHO05D008118 4.8e-191 671.0 337 100.0
CsaV3_3G010120 Cucumis sativus L. HOM05D006268 ORTHO05D008118 3.5e-186 654.8 337 98.2
ClCG05G002670 Citrullus lanatus HOM05D006268 ORTHO05D008118 1.3e-167 593.2 337 89.3
Sed0013667 Sechium edule HOM05D006268 ORTHO05D008118 1.8e-161 572.8 337 86.6
MD00G1098400 Malus domestica HOM05D006268 ORTHO05D008118 1.3e-140 503.4 330 75.5
RcHm_v2.0_Chr1g0341291 Rosa chinensis HOM05D006268 ORTHO05D008118 3.8e-140 501.9 333 75.4
FAN03G0807 Fragaria x ananassa HOM05D006268 ORTHO05D008118 6.5e-140 501.1 333 74.5
Cfa010996 Carpinus fangiana HOM05D006268 ORTHO05D008118 3.2e-139 498.8 335 73.7
FAN06G0712 Fragaria x ananassa HOM05D006268 ORTHO05D008118 7.2e-139 497.7 333 74.2
Haze_02942 Corylus avellana HOM05D006268 ORTHO05D008118 1.4e-137 493.4 335 73.1
FvH4_7g08020 Fragaria vesca HOM05D006268 ORTHO05D008118 4.0e-137 491.9 333 73.3
Prupe.2G109200 Prunus persica HOM05D006268 ORTHO05D008118 6.7e-137 491.1 331 74.0
GSVIVG01016051001 Vitis vinifera HOM05D006268 ORTHO05D008118 8.8e-137 490.7 330 74.5
CANSAT54G1338 Cannabis sativa HOM05D006268 ORTHO05D008118 2.2e-135 486.1 338 74.6
Potri.002G238300 Populus trichocarpa HOM05D006268 ORTHO05D008118 3.7e-135 485.3 331 71.6
CiPaw.13G019100 Carya illinoinensis HOM05D006268 ORTHO05D008118 4.8e-135 485.0 335 73.1
TWI59G0917 Tripterygium wilfordii HOM05D006268 ORTHO05D008118 4.1e-134 481.9 335 72.5
Sabra02G0181600 Salix brachista HOM05D006268 ORTHO05D008118 9.1e-134 480.7 328 71.6
Lalb_Chr07g0194551 Lupinus albus HOM05D006268 ORTHO05D008118 1.6e-133 479.9 336 72.3
QL04p024264 Quercus lobata HOM05D006268 ORTHO05D008118 1.7e-132 476.5 356 68.0
Eucgr.D01130 Eucalyptus grandis HOM05D006268 ORTHO05D008118 1.1e-131 473.8 335 69.3
FAN01G0355 Fragaria x ananassa HOM05D006268 ORTHO05D008118 1.9e-131 473.0 377 65.0
Glyma.03G093200 Glycine max HOM05D006268 ORTHO05D008118 1.6e-130 469.9 334 70.7
TAR375G0229 Trochodendron aralioides HOM05D006268 ORTHO05D008118 1.6e-130 469.9 332 70.8
Nitab4.5_0001209g0060 Nicotiana tabacum HOM05D006268 ORTHO05D008118 2.1e-130 469.5 332 71.1
DCAR_029548 Daucus carota HOM05D006268 ORTHO05D008118 2.7e-130 469.2 332 70.8
Glyma.16G080700 Glycine max HOM05D006268 ORTHO05D008118 3.0e-129 465.7 334 69.5
VMungo0331G0592 Vigna mungo HOM05D006268 ORTHO05D008118 4.0e-129 465.3 334 68.9
Ciclev10021110m.g Citrus clementina HOM05D006268 ORTHO05D008118 2.6e-128 462.6 329 70.2
Lj3g0019214 Lotus japonicus HOM05D006268 ORTHO05D008118 2.6e-128 462.6 332 70.5
Phvul.010G033866 Phaseolus vulgaris HOM05D006268 ORTHO05D008118 4.4e-128 461.8 334 68.6
Nitab4.5_0001476g0040 Nicotiana tabacum HOM05D006268 ORTHO05D008118 1.3e-127 460.3 332 69.6
Actinidia33290 Actinidia chinensis HOM05D006268 ORTHO05D008118 2.8e-127 459.1 335 70.1
Ca_23170_v3 Cicer arietinum L. HOM05D006268 ORTHO05D008118 3.7e-127 458.8 332 70.2
Psat4g207400 Pisum sativum HOM05D006268 ORTHO05D008118 1.4e-126 456.8 332 69.6
CSS0005578 Camellia sinensis var. sinensis HOM05D006268 ORTHO05D008118 2.4e-126 456.1 332 69.3
MSTRG.4977 Avicennia marina HOM05D006268 ORTHO05D008118 1.2e-125 453.8 338 68.3
Cc02_g26120 Coffea canephora HOM05D006268 ORTHO05D008118 2.7e-125 452.6 334 69.5
CAN.G1551.1 Capsicum annuum HOM05D006268 ORTHO05D008118 7.7e-125 451.1 332 69.0
Gohir.A06G169600 Gossypium hirsutum HOM05D006268 ORTHO05D008118 8.5e-124 447.6 329 68.7
PGR083G0810 Punica granatum HOM05D006268 ORTHO05D008118 8.5e-124 447.6 333 67.0
Solyc01g080940.3 Solanum lycopersicum HOM05D006268 ORTHO05D008118 1.1e-123 447.2 332 69.0
Duzib128G0100 Durio zibethinus HOM05D006268 ORTHO05D008118 1.5e-123 446.8 341 66.3
Thecc.03G001300 Theobroma cacao HOM05D006268 ORTHO05D008118 1.9e-123 446.4 329 68.4
Nn1g00551 Nelumbo nucifera HOM05D006268 ORTHO05D008118 2.5e-123 446.0 333 68.8
Sc26g0001930 Simmondsia chinensis HOM05D006268 ORTHO05D008118 2.5e-123 446.0 333 68.8
Rhsim01G0145800 Rhododendron simsii HOM05D006268 ORTHO05D008118 2.1e-122 443.0 332 66.9
vmacro21105 Vaccinium macrocarpon HOM05D006268 ORTHO05D008118 3.6e-122 442.2 332 67.2
Gorai.N008000 Gossypium raimondii HOM05D006268 ORTHO05D008118 8.0e-122 441.0 329 67.8
Sopen01g032530 Solanum pennellii HOM05D006268 ORTHO05D008118 1.0e-121 440.7 332 68.7
PGSC0003DMG400001820 Solanum tuberosum HOM05D006268 ORTHO05D008118 6.8e-121 438.0 332 66.9
Migut.N01815 Erythranthe guttata HOM05D006268 ORTHO05D008118 1.5e-120 436.8 340 66.5
PSO782G1498 Papaver somniferum HOM05D006268 ORTHO05D008118 2.6e-120 436.0 335 64.8
COL.COLO4_19510 Corchorus olitorius HOM05D006268 ORTHO05D006513 3.4e-120 435.6 329 68.1
PSO063G1446 Papaver somniferum HOM05D006268 ORTHO05D008118 4.4e-120 435.3 332 65.4
SalBow4G0743 Salvia bowleyana HOM05D006268 ORTHO05D008118 4.9e-119 431.8 331 66.8
Medtr8g010550 Medicago truncatula HOM05D006268 ORTHO05D008118 6.3e-119 431.4 334 65.6
HanXRQChr04g0123661 Helianthus annuus HOM05D006268 ORTHO05D008118 2.7e-117 426.0 333 64.3
Atru.BG.53.p Acer truncatum HOM05D006268 ORTHO05D008118 1.7e-116 423.3 322 68.9
EL10Ac1g00692 Beta vulgaris HOM05D006268 ORTHO05D008118 3.8e-116 422.2 337 63.2
Aqoxy3G02409 Aquilegia oxysepala HOM05D006268 ORTHO05D008118 1.5e-115 420.2 334 65.9
Aqoxy3G02437 Aquilegia oxysepala HOM05D006268 ORTHO05D008118 1.5e-115 420.2 334 65.9
AUR62023342 Chenopodium quinoa HOM05D006268 ORTHO05D008118 1.5e-115 420.2 330 64.2
Ah.06g189690 Amaranthus hybridus HOM05D006268 ORTHO05D008118 9.5e-115 417.5 347 63.4
Lsat_1_v5_gn_7_10860 Lactuca sativa HOM05D006268 ORTHO05D008118 8.0e-114 414.5 332 64.5
CSS0033423 Camellia sinensis var. sinensis HOM05D006268 ORTHO05D008118 6.8e-113 411.4 332 64.2
Hund26937 Selenicereus undatus HOM05D006268 ORTHO05D008118 4.4e-112 408.7 330 62.4
BcaC03g14111 Brassica carinata HOM05D006268 ORTHO05D008118 7.5e-112 407.9 329 64.1
C02p13500 Brassica napus HOM05D006268 ORTHO05D008118 1.3e-111 407.1 329 64.1
BolC2t07462H Brassica oleracea HOM05D006268 ORTHO05D008118 1.3e-111 407.1 329 64.1
A02p07860 Brassica napus HOM05D006268 ORTHO05D008118 2.4e-110 402.9 329 63.5
BraA02t05859Z Brassica rapa HOM05D006268 ORTHO05D008118 2.4e-110 402.9 329 63.5
arahy.Tifrunner.gnm1.ann1.EHLP6C Arachis hypogaea HOM05D006268 ORTHO05D008118 1.2e-109 400.6 338 63.0
ATR0049G059 Amborella trichopoda HOM05D006268 ORTHO05D008118 1.6e-109 400.2 338 62.1
arahy.Tifrunner.gnm1.ann1.V3PJPX Arachis hypogaea HOM05D006268 ORTHO05D008118 2.7e-109 399.4 338 62.7
BcaB05g22409 Brassica carinata HOM05D006268 ORTHO05D008118 4.6e-109 398.7 329 62.3
Thhalv10014126m.g Eutrema salsugineum HOM05D006268 ORTHO05D008118 5.9e-109 398.3 332 62.3
unitig_22.g5778 Utricularia gibba HOM05D006268 ORTHO05D008118 2.5e-107 392.9 331 61.3
THA.LOC104799599 Tarenaya hassleriana HOM05D006268 ORTHO05D008118 3.6e-106 389.0 333 60.1
Aa31LG11G10 Aethionema arabicum HOM05D006268 ORTHO05D008118 8.0e-106 387.9 335 60.6
Manes.08G055700 Manihot esculenta HOM05D006268 ORTHO05D008118 5.2e-105 385.2 292 68.2
AL8G34320 Arabidopsis lyrata HOM05D006268 ORTHO05D008118 2.0e-104 383.3 332 60.2
TPR.G9770 Trifolium pratense HOM05D006268 ORTHO05D008118 3.2e-102 375.9 330 59.1
Os03g0390700 Oryza sativa ssp. japonica HOM05D006268 ORTHO05D008118 6.0e-101 371.7 324 58.3
Sp6g19880 Schrenkiella parvula HOM05D006268 ORTHO05D008118 6.0e-101 371.7 332 58.4
AUR62013813 Chenopodium quinoa HOM05D006268 ORTHO05D008118 3.0e-100 369.4 330 59.4
FAN10G2079 Fragaria x ananassa HOM05D006268 ORTHO05D008118 6.6e-100 368.2 301 65.1
CARHR272020 Cardamine hirsuta HOM05D006268 ORTHO05D008118 1.9e-99 366.7 332 58.1
AT5G58220 Arabidopsis thaliana HOM05D006268 ORTHO05D008118 2.8e-98 362.8 332 58.4
Carub.0008s1876 Capsella rubella HOM05D006268 ORTHO05D008118 2.8e-98 362.8 332 59.6
SEGI_16160 Sequoiadendron giganteum HOM05D006268 ORTHO05D008118 4.0e-97 359.0 350 55.7
HPP92_028001 Vanilla planifolia HOM05D006268 ORTHO05D008118 3.4e-96 355.9 329 55.0
Zm00001eb392560 Zea mays HOM05D006268 ORTHO05D008118 3.7e-95 352.4 336 55.1
ECA236G2174 Erigeron canadensis HOM05D006268 ORTHO05D008118 1.0e-92 344.4 316 57.6
Dinv43994 Davidia involucrata HOM05D006268 ORTHO05D008118 2.6e-88 329.7 240 70.0
SMO367G0371 Selaginella moellendorffii HOM05D006268 ORTHO05D008118 2.0e-80 303.5 354 48.0
Pp3c4_10360 Physcomitrium patens HOM05D006268 ORTHO05D008118 1.3e-79 300.8 334 50.6
SGA_v2.0_scaffold95G28736 Striga asiatica HOM05D006268 ORTHO05D008118 6.4e-79 298.5 246 63.8
CDE04G2879 Ceratophyllum demersum HOM05D006268 ORTHO05D008118 8.7e-76 288.1 273 54.6
Mapoly0090s0043 Marchantia polymorpha HOM05D006268 ORTHO05D008118 3.6e-74 282.7 349 47.0
CBR_g30589 Chara braunii HOM05D006268 ORTHO05D008118 2.9e-63 246.5 462 36.4
AagrBONN_evm.TU.Sc2ySwM_228.2734 Anthoceros agrestis HOM05D006268 ORTHO05D008118 1.4e-62 244.2 312 44.2
Lj7C555G14 Lonicera japonica HOM05D006268 ORTHO05D008118 5.1e-60 235.7 165 71.5
PRCOL_00004243 Prasinoderma coloniale HOM05D006268 ORTHO05D008118 3.1e-57 226.5 336 41.4
Cre17.g735950 Chlamydomonas reinhardtii HOM05D006268 ORTHO05D008118 1.7e-55 220.7 346 39.3
BcaB05g22411 Brassica carinata HOM05D006268 ORTHO05D008118 3.8e-55 219.5 191 61.3
Lj7C555T10 Lonicera japonica HOM05D006268 ORTHO05D008118 1.8e-52 210.7 147 71.4
DCAR_025012 Daucus carota HOM05D006268 ORTHO05D008118 1.3e-50 204.5 167 65.9
Cpa.g.sc74.89 Carica papaya HOM05D006268 ORTHO05D008118 1.8e-44 184.1 181 56.9
SMO197G0011 Selaginella moellendorffii HOM05D006268 ORTHO05D008118 7.7e-40 168.7 146 58.9
SMO367G0431 Selaginella moellendorffii HOM05D006268 ORTHO05D008118 1.4e-38 164.5 169 53.3
Sc26g0001910 Simmondsia chinensis HOM05D006268 ORTHO05D008118 4.8e-34 149.4 151 53.0
SHI28983 Sapria himalayana HOM05D006268 ORTHO05D008118 1.8e-33 147.5 142 52.8
MCO07G440 Micromonas commoda HOM05D006268 ORTHO05D008118 1.2e-32 144.8 153 51.0
BolC9t57859H Brassica oleracea HOM05D006268 ORTHO05D008118 6.7e-28 129.0 81 72.8
MD02G1236900 Malus domestica HOM05D006268 ORTHO05D008118 2.6e-19 100.5 134 47.8
MCO05G065 Micromonas commoda HOM05D006268 ORTHO05D008118 3.3e-19 100.1 132 42.4
Sabra14G0137200 Salix brachista HOM05D008143 ORTHO05D010256 5.3e-17 92.8 75 62.7
Hma1.2p1_0076F.1_g039600 Hydrangea macrophylla HOM05D006268 ORTHO05D008118 7.0e-17 92.4 68 61.8
Oeu050272.1 Olea europaea HOM05D006268 ORTHO05D008118 3.8e-15 86.7 72 58.3
BcaC04g19902 Brassica carinata HOM05D006268 ORTHO05D008118 2.7e-13 80.5 57 63.2
Dinv43550 Davidia involucrata HOM05D006268 ORTHO05D008118 6.3e-10 69.3 49 75.5
Cfa010995 Carpinus fangiana HOM05D006268 ORTHO05D008118 1.8e-09 67.8 58 58.6
C09p50070 Brassica napus HOM05D006268 ORTHO05D008118 4.5e-08 63.2 81 44.4
SHI28985 Sapria himalayana HOM05D000023 ORTHO05D000014 1.9e-06 57.8 45 60.0


User provided reference genes

Program Settings