Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C005443.2 Cucumis melo HOM05D002705 ORTHO05D004955 0.0e+00 2182.1 1127 100.0
CsaV3_5G005160 Cucumis sativus L. HOM05D002705 ORTHO05D004955 0.0e+00 2061.2 1127 94.4
ClCG01G004930 Citrullus lanatus HOM05D002705 ORTHO05D004955 0.0e+00 1948.7 1141 88.3
Sed0003657 Sechium edule HOM05D002705 ORTHO05D004955 0.0e+00 1846.6 1129 85.3
Cfa013602 Carpinus fangiana HOM05D002705 ORTHO05D004955 0.0e+00 1374.4 1150 65.0
QL09p027408 Quercus lobata HOM05D002705 ORTHO05D004955 0.0e+00 1372.8 1233 62.5
Potri.012G114100 Populus trichocarpa HOM05D002705 ORTHO05D004955 0.0e+00 1336.6 1142 65.0
Prupe.2G270600 Prunus persica HOM05D002705 ORTHO05D004955 0.0e+00 1322.8 1147 63.1
TWI39G0103 Tripterygium wilfordii HOM05D002705 ORTHO05D004955 0.0e+00 1320.8 1158 63.0
TAR636G2282 Trochodendron aralioides HOM05D002705 ORTHO05D004955 0.0e+00 1318.5 1163 62.6
CiPaw.07G183200 Carya illinoinensis HOM05D002705 ORTHO05D004955 0.0e+00 1317.8 1029 67.8
Atru.chr6.1980 Acer truncatum HOM05D002705 ORTHO05D004955 0.0e+00 1310.8 1156 62.1
Atru.chr6.2006 Acer truncatum HOM05D002705 ORTHO05D004955 0.0e+00 1308.5 1156 62.0
Sabra12G0083000 Salix brachista HOM05D002705 ORTHO05D004955 0.0e+00 1307.4 1170 62.9
Ciclev10033740m.g Citrus clementina HOM05D002705 ORTHO05D004955 0.0e+00 1303.9 1149 62.1
RcHm_v2.0_Chr1g0373301 Rosa chinensis HOM05D002705 ORTHO05D004955 0.0e+00 1285.0 1143 62.8
Thecc.03G145700 Theobroma cacao HOM05D002705 ORTHO05D004955 0.0e+00 1278.5 1121 63.4
Actinidia13623 Actinidia chinensis HOM05D002705 ORTHO05D004955 0.0e+00 1275.8 1192 59.4
FvH4_7g26710 Fragaria vesca HOM05D002705 ORTHO05D004955 0.0e+00 1269.2 1140 62.5
Dinv34540 Davidia involucrata HOM05D002705 ORTHO05D004955 0.0e+00 1266.5 1205 58.8
FAN03G2179 Fragaria x ananassa HOM05D002705 ORTHO05D004955 0.0e+00 1265.0 1146 62.3
Gorai.006G273800 Gossypium raimondii HOM05D002705 ORTHO05D004955 0.0e+00 1264.6 1155 60.4
Glyma.20G198400 Glycine max HOM05D002705 ORTHO05D004955 0.0e+00 1260.4 1153 60.8
Gohir.D09G249500 Gossypium hirsutum HOM05D002705 ORTHO05D004955 0.0e+00 1254.2 1155 60.2
Lj5g0005183 Lotus japonicus HOM05D002705 ORTHO05D004955 0.0e+00 1254.2 1138 60.4
Lalb_Chr06g0169611 Lupinus albus HOM05D002705 ORTHO05D004955 0.0e+00 1253.0 1164 59.9
FAN06G0843 Fragaria x ananassa HOM05D002705 ORTHO05D004955 0.0e+00 1252.3 1147 61.8
Nn1g00769 Nelumbo nucifera HOM05D002705 ORTHO05D004955 0.0e+00 1251.5 1178 59.8
Haze_22224 Corylus avellana HOM05D002705 ORTHO05D004955 0.0e+00 1251.1 1213 59.2
Cc00_g24340 Coffea canephora HOM05D002705 ORTHO05D004955 0.0e+00 1241.9 1233 55.6
PGR142G4199 Punica granatum HOM05D002705 ORTHO05D004955 0.0e+00 1240.7 1173 59.9
GSVIVG01013853001 Vitis vinifera HOM05D002705 ORTHO05D004955 0.0e+00 1236.9 952 67.3
Medtr1g072800 Medicago truncatula HOM05D002705 ORTHO05D004955 0.0e+00 1233.4 1008 65.0
Aa31LG7G10510 Aethionema arabicum HOM05D002705 ORTHO05D004955 0.0e+00 1233.0 1156 58.9
Gohir.A09G248500 Gossypium hirsutum HOM05D002705 ORTHO05D004955 0.0e+00 1229.2 1139 60.1
TPR.G18561 Trifolium pratense HOM05D002705 ORTHO05D004955 0.0e+00 1227.6 1033 63.2
AT4G25120 Arabidopsis thaliana HOM05D002705 ORTHO05D004955 0.0e+00 1226.5 1162 58.3
Psat6g140240 Pisum sativum HOM05D002705 ORTHO05D004955 0.0e+00 1226.1 1020 64.3
Aqoxy7G00864 Aquilegia oxysepala HOM05D002705 ORTHO05D004955 0.0e+00 1223.4 1047 62.8
THA.LOC104825051 Tarenaya hassleriana HOM05D002705 ORTHO05D004955 0.0e+00 1223.4 1170 57.9
Sopen03g024730 Solanum pennellii HOM05D002705 ORTHO05D004955 0.0e+00 1220.3 1206 56.9
Migut.F01210 Erythranthe guttata HOM05D002705 ORTHO05D004955 0.0e+00 1216.1 1178 58.3
AL7G28030 Arabidopsis lyrata HOM05D002705 ORTHO05D004955 0.0e+00 1214.1 1163 58.1
Carub.0007s1591 Capsella rubella HOM05D002705 ORTHO05D004955 0.0e+00 1212.2 1152 58.2
Eucgr.K00116 Eucalyptus grandis HOM05D002705 ORTHO05D004955 0.0e+00 1211.8 919 67.7
DCAR_014643 Daucus carota HOM05D002705 ORTHO05D004955 0.0e+00 1210.3 1075 61.0
SGA_v2.0_scaffold352G49687 Striga asiatica HOM05D002705 ORTHO05D004955 0.0e+00 1199.5 1167 57.0
Thhalv10024258m.g Eutrema salsugineum HOM05D002705 ORTHO05D004955 0.0e+00 1196.8 1174 57.2
Lj8C49G2 Lonicera japonica HOM05D002705 ORTHO05D004955 0.0e+00 1193.3 1096 59.7
BcaC06g32837 Brassica carinata HOM05D002705 ORTHO05D004955 0.0e+00 1192.6 1184 56.4
HanXRQChr15g0493601 Helianthus annuus HOM05D002705 ORTHO05D004955 0.0e+00 1187.6 1219 56.2
Rhsim03G0158700 Rhododendron simsii HOM05D002705 ORTHO05D004955 0.0e+00 1187.6 1219 56.3
Manes.14G040900 Manihot esculenta HOM05D002705 ORTHO05D004955 0.0e+00 1183.7 871 70.3
MD07G1244800 Malus domestica HOM05D002705 ORTHO05D004955 0.0e+00 1181.8 1138 59.2
Phvul.L001885 Phaseolus vulgaris HOM05D002705 ORTHO05D004955 0.0e+00 1179.9 1088 59.9
PSO675G1384 Papaver somniferum HOM05D002705 ORTHO05D004955 0.0e+00 1176.8 909 68.6
ECA232G4016 Erigeron canadensis HOM05D002705 ORTHO05D004955 0.0e+00 1176.4 1225 55.1
Sp7g23120 Schrenkiella parvula HOM05D002705 ORTHO05D004955 0.0e+00 1173.7 933 65.5
COL.COLO4_37311 Corchorus olitorius HOM05D002705 ORTHO05D004955 0.0e+00 1170.2 1072 61.5
FAN01G0508 Fragaria x ananassa HOM05D002705 ORTHO05D004955 0.0e+00 1160.6 1145 59.0
FAN10G0038 Fragaria x ananassa HOM05D002705 ORTHO05D004955 0.0e+00 1158.3 1219 56.3
vmacro06848 Vaccinium macrocarpon HOM05D002705 ORTHO05D004955 0.0e+00 1147.1 1090 58.7
SalBow2G1886 Salvia bowleyana HOM05D002705 ORTHO05D004955 0.0e+00 1142.9 1251 53.6
Nitab4.5_0010058g0010 Nicotiana tabacum HOM05D002705 ORTHO05D004955 0.0e+00 1140.9 1205 55.1
A03p55770 Brassica napus HOM05D002705 ORTHO05D004955 0.0e+00 1132.1 1203 54.1
BraA03t14645Z Brassica rapa HOM05D002705 ORTHO05D004955 0.0e+00 1131.7 1205 53.8
BolC7t45891H Brassica oleracea HOM05D002705 ORTHO05D004955 0.0e+00 1129.4 1194 54.7
EL10As1g23078 Beta vulgaris HOM05D002705 ORTHO05D004955 0.0e+00 1125.9 1182 54.1
MD07G1243100 Malus domestica HOM05D002705 ORTHO05D004955 0.0e+00 1125.9 873 68.3
C07p54050 Brassica napus HOM05D002705 ORTHO05D004955 0.0e+00 1124.4 1200 54.1
Os07g0492100 Oryza sativa ssp. japonica HOM05D002705 ORTHO05D004955 0.0e+00 1124.4 913 63.7
ATR0665G329 Amborella trichopoda HOM05D002705 ORTHO05D004955 0.0e+00 1114.8 1201 53.8
Lsat_1_v5_gn_0_9880 Lactuca sativa HOM05D002705 ORTHO05D004955 0.0e+00 1099.0 1228 52.8
Ah.02g115400 Amaranthus hybridus HOM05D002705 ORTHO05D004955 2.5e-308 1062.4 1013 57.2
Cpa.g.sc13.232 Carica papaya HOM05D002705 ORTHO05D004955 5.1e-306 1054.7 941 62.2
Hma1.2p1_2119F.1_g314370 Hydrangea macrophylla HOM05D002705 ORTHO05D004955 6.2e-304 1047.7 824 66.3
MD07G1245700 Malus domestica HOM05D002705 ORTHO05D004955 2.2e-301 1039.3 833 66.7
MD07G1243600 Malus domestica HOM05D002705 ORTHO05D004955 8.7e-298 1027.3 1144 53.8
Nitab4.5_0000103g0340 Nicotiana tabacum HOM05D002705 ORTHO05D004955 4.1e-295 1018.5 808 65.5
Solyc03g093850.2 Solanum lycopersicum HOM05D002705 ORTHO05D004955 5.9e-294 1014.6 999 56.9
MSTRG.8400 Avicennia marina HOM05D002705 ORTHO05D004955 1.0e-290 1003.8 803 64.5
CANSAT56G1220 Cannabis sativa HOM05D002705 ORTHO05D004955 4.8e-288 995.0 872 63.1
Oeu044165.1 Olea europaea HOM05D002705 ORTHO05D004955 6.3e-288 994.6 966 57.7
HPP92_003517 Vanilla planifolia HOM05D002705 ORTHO05D004955 1.5e-278 963.4 1021 53.2
unitig_578.g16613 Utricularia gibba HOM05D002705 ORTHO05D004955 1.7e-277 959.9 1137 49.9
MD07G1244300 Malus domestica HOM05D002705 ORTHO05D004955 6.3e-264 914.8 805 63.1
Mapoly0067s0049 Marchantia polymorpha HOM05D002705 ORTHO05D004955 8.5e-261 904.4 1014 49.1
arahy.Tifrunner.gnm1.ann1.WYM0Y2 Arachis hypogaea HOM05D002705 ORTHO05D004955 1.2e-257 894.0 691 66.9
AagrBONN_evm.TU.Sc2ySwM_117.709 Anthoceros agrestis HOM05D002705 ORTHO05D004955 9.8e-257 891.0 1067 48.0
arahy.Tifrunner.gnm1.ann1.ZG0SUW Arachis hypogaea HOM05D002705 ORTHO05D004955 2.8e-256 889.4 689 66.6
Pp3c1_29170 Physcomitrium patens HOM05D002705 ORTHO05D004955 6.6e-253 878.2 963 50.3
AUR62042388 Chenopodium quinoa HOM05D002705 ORTHO05D004955 2.8e-248 862.8 1101 47.8
SMO263G0015 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 1.2e-238 830.9 959 48.9
SMO118G0423 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 3.9e-229 799.3 921 49.4
MD07G1241600 Malus domestica HOM05D002705 ORTHO05D004955 1.1e-228 797.7 628 67.0
Peaxi162Scf00073g01729 Petunia axillaris HOM05D002705 ORTHO05D004955 4.0e-226 789.3 593 68.0
CARHR232510 Cardamine hirsuta HOM05D002705 ORTHO05D004955 3.6e-219 766.1 618 63.8
Ca_09785_v3 Cicer arietinum L. HOM05D002705 ORTHO05D004955 6.4e-208 728.8 590 65.8
Hma1.2p1_2119F.1_g314360 Hydrangea macrophylla HOM05D002705 ORTHO05D004955 1.7e-192 677.6 1064 42.7
Sc11g0004220 Simmondsia chinensis HOM05D002705 ORTHO05D004955 5.5e-183 646.0 483 65.2
CSS0042603 Camellia sinensis var. sinensis HOM05D002705 ORTHO05D004955 8.2e-179 632.1 588 60.0
Nn1g00770 Nelumbo nucifera HOM05D002705 ORTHO05D004955 9.0e-178 628.6 497 67.4
AagrBONN_evm.TU.Sc2ySwM_340.578 Anthoceros agrestis HOM05D002705 ORTHO05D004955 8.5e-152 542.3 747 42.6
CAN.G408.1 Capsicum annuum HOM05D002705 ORTHO05D004955 1.6e-150 538.1 414 66.2
HPP92_027816 Vanilla planifolia HOM05D002705 ORTHO05D004955 1.3e-147 528.5 732 43.9
Manes.14G040200 Manihot esculenta HOM05D002705 ORTHO05D004955 1.1e-135 488.8 401 65.6
CAN.G1654.1 Capsicum annuum HOM05D002705 ORTHO05D004955 1.2e-126 458.8 420 58.1
MD07G1241700 Malus domestica HOM05D002705 ORTHO05D004955 2.3e-117 427.9 389 62.7
CAN.G1406.2 Capsicum annuum HOM05D002705 ORTHO05D004955 2.2e-115 421.4 348 62.1
FAN05G3181 Fragaria x ananassa HOM05D002705 ORTHO05D004955 3.7e-107 394.0 395 58.5
CBR_g55304 Chara braunii HOM05D002705 ORTHO05D004955 1.7e-83 315.5 393 41.7
FAN01G1045 Fragaria x ananassa HOM05D002705 ORTHO05D004955 1.8e-69 268.9 320 53.1
SMO118G0116 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 2.0e-68 265.4 527 35.9
FAN17G2187 Fragaria x ananassa HOM05D002705 ORTHO05D004955 4.3e-63 247.7 261 58.2
CAN.G1559.4 Capsicum annuum HOM05D002705 ORTHO05D004955 2.8e-62 245.0 342 46.2
Pp3s32_280 Physcomitrium patens HOM05D020685 ORTHO05D022318 4.8e-62 244.2 694 30.0
Hma1.2p1_2119F.1_g314380 Hydrangea macrophylla HOM05D002705 ORTHO05D004955 3.9e-56 224.6 227 53.3
Ca_09786_v3 Cicer arietinum L. HOM05D002705 ORTHO05D004955 5.1e-56 224.2 207 61.8
Cpa.g.sc13.234 Carica papaya HOM05D002705 ORTHO05D004955 3.3e-55 221.5 189 61.9
CAN.G1406.1 Capsicum annuum HOM05D002705 ORTHO05D004955 6.3e-54 217.2 282 44.3
MD07G1245200 Malus domestica HOM05D002705 ORTHO05D004955 9.1e-53 213.4 165 66.1
Solyc03g093840.3 Solanum lycopersicum HOM05D002705 ORTHO05D004955 3.4e-52 211.5 198 57.1
Peaxi162Scf00073g01730 Petunia axillaris HOM05D002705 ORTHO05D004955 7.7e-52 210.3 438 39.5
CAN.G1654.2 Capsicum annuum HOM05D002705 ORTHO05D004955 1.4e-50 206.1 164 62.2
SEGI_07874 Sequoiadendron giganteum HOM05D002705 ORTHO05D004955 2.5e-50 205.3 246 46.3
Mapoly0020s0153 Marchantia polymorpha HOM05D002705 ORTHO05D004955 3.6e-49 201.4 717 27.2
MCO05G634 Micromonas commoda HOM05D002705 ORTHO05D004955 3.0e-48 198.4 691 27.5
Cfa026800 Carpinus fangiana HOM05D002705 ORTHO05D004955 1.7e-46 192.6 834 24.2
AagrBONN_evm.TU.Sc2ySwM_362.2714 Anthoceros agrestis HOM05D002705 ORTHO05D004955 1.1e-45 189.9 842 25.2
Pp3s70_120 Physcomitrium patens HOM05D002705 ORTHO05D004955 2.2e-43 182.2 658 28.0
SEGI_05624 Sequoiadendron giganteum HOM05D002705 ORTHO05D004955 2.9e-43 181.8 151 60.9
AagrBONN_evm.TU.Sc2ySwM_368.2221 Anthoceros agrestis HOM05D002705 ORTHO05D004955 5.5e-42 177.6 739 26.3
CDE06G1177 Ceratophyllum demersum HOM05D002705 ORTHO05D004955 2.1e-41 175.6 147 60.5
SHI35079 Sapria himalayana HOM05D002705 ORTHO05D000001 4.7e-41 174.5 182 53.8
Peaxi162Scf00073g01719 Petunia axillaris HOM05D002705 ORTHO05D004955 8.8e-40 170.2 171 56.7
SMO118G0216 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 1.5e-39 169.5 254 39.8
SEGI_26843 Sequoiadendron giganteum HOM05D002705 ORTHO05D004955 7.5e-39 167.2 113 75.2
Sc11g0004230 Simmondsia chinensis HOM05D002705 ORTHO05D004955 2.2e-38 165.6 123 65.0
CBR_g46888 Chara braunii HOM05D002705 ORTHO05D004955 1.3e-35 156.4 214 46.7
SEGI_07071 Sequoiadendron giganteum HOM05D002705 ORTHO05D004955 1.2e-33 149.8 109 70.6
SMO119G0107 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 6.8e-32 144.1 749 25.5
SMO222G0004 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 5.7e-31 141.0 155 49.7
PRCOL_00004767 Prasinoderma coloniale HOM05D002705 ORTHO05D004955 2.2e-30 139.0 810 25.9
SEGI_13522 Sequoiadendron giganteum HOM05D002705 ORTHO05D004955 2.0e-28 132.5 819 22.7
ATR0789G167 Amborella trichopoda HOM05D002705 ORTHO05D004955 7.7e-28 130.6 485 26.2
VMungo0720G0654 Vigna mungo HOM05D002705 ORTHO05D004955 4.7e-25 121.3 113 60.2
MD07G1244200 Malus domestica HOM05D002705 ORTHO05D004955 2.8e-22 112.1 130 48.5
CBR_g22322 Chara braunii HOM05D000019 ORTHO05D000002 8.3e-22 110.5 329 28.3
MD07G1244100 Malus domestica HOM05D002705 ORTHO05D004955 3.1e-21 108.6 73 68.5
CBR_g55305 Chara braunii HOM05D002705 ORTHO05D004955 2.7e-20 105.5 105 50.5
Lsat_1_v5_gn_5_183700 Lactuca sativa HOM05D002705 ORTHO05D021366 1.3e-19 103.2 69 78.3
Hund10671 Selenicereus undatus HOM05D002705 ORTHO05D004955 1.7e-19 102.8 81 61.7
CDE06G2589 Ceratophyllum demersum HOM05D002705 ORTHO05D004955 4.7e-17 94.7 275 33.1
Cre07.g343333 Chlamydomonas reinhardtii HOM05D002705 ORTHO05D004955 6.1e-17 94.4 263 27.8
Medtr0675s0010 Medicago truncatula HOM05D002705 ORTHO05D004955 8.9e-16 90.5 686 23.6
Cre07.g314400 Chlamydomonas reinhardtii HOM05D002705 ORTHO05D004955 5.4e-13 81.3 431 24.1
SMO119G0278 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 2.7e-12 79.0 151 36.4
Cre07.g312250 Chlamydomonas reinhardtii HOM05D002705 ORTHO05D004955 1.1e-10 73.6 101 44.6
Pp3s70_20 Physcomitrium patens HOM05D002705 ORTHO05D313936 2.3e-08 65.9 772 21.4
CBR_g26524 Chara braunii HOM05D002705 ORTHO05D004955 3.4e-07 62.0 86 43.0
MD07G1245800 Malus domestica HOM05D002705 ORTHO05D004955 6.4e-06 57.8 192 32.8
SMO115G0155 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 8.3e-06 57.4 69 39.1


User provided reference genes

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