Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C004853.2 Cucumis melo HOM05D002578 ORTHO05D005154 5.1e-90 334.3 163 100.0
Sed0023475 Sechium edule HOM05D002578 ORTHO05D005154 8.7e-82 307.0 205 78.0
Sed0004436 Sechium edule HOM05D002578 ORTHO05D005154 1.8e-74 282.7 178 82.6
Gohir.1Z049834 Gossypium hirsutum HOM05D002578 ORTHO05D005154 7.4e-73 277.3 205 71.7
Gohir.D11G067600 Gossypium hirsutum HOM05D002578 ORTHO05D005154 7.4e-73 277.3 205 71.7
BNapus_Darmor_BZH_scaffold_253p00370 Brassica napus HOM05D002578 ORTHO05D005154 9.7e-73 276.9 205 71.2
C03p38130 Brassica napus HOM05D002578 ORTHO05D005154 9.7e-73 276.9 205 71.2
BolSC29t60532H Brassica oleracea HOM05D002578 ORTHO05D005154 9.7e-73 276.9 205 71.2
BolSC56t61245H Brassica oleracea HOM05D002578 ORTHO05D005154 9.7e-73 276.9 205 71.2
BraA06t25386Z Brassica rapa HOM05D002578 ORTHO05D005154 9.7e-73 276.9 205 71.2
BraSC103t45443Z Brassica rapa HOM05D002578 ORTHO05D005154 9.7e-73 276.9 205 71.2
BraSC103t45487Z Brassica rapa HOM05D002578 ORTHO05D005154 9.7e-73 276.9 205 71.2
BraSC138t45551Z Brassica rapa HOM05D002578 ORTHO05D005154 9.7e-73 276.9 205 71.2
BraSC59t46568Z Brassica rapa HOM05D002578 ORTHO05D005154 9.7e-73 276.9 205 71.2
ATCG00800 Arabidopsis thaliana HOM05D002578 ORTHO05D005154 8.2e-72 273.9 205 70.7
TAR375G1061 Trochodendron aralioides HOM05D002578 ORTHO05D005154 1.1e-71 273.5 205 71.2
CARHR282270 Cardamine hirsuta HOM05D002578 ORTHO05D005154 1.4e-71 273.1 205 70.2
PGR111G0034 Punica granatum HOM05D002578 ORTHO05D005154 1.8e-71 272.7 205 70.2
BolSC35t60726H Brassica oleracea HOM05D002578 ORTHO05D005154 2.4e-71 272.3 206 70.9
HanXRQChr00c0557g0575711 Helianthus annuus HOM05D002578 ORTHO05D005154 9.0e-71 270.4 205 69.8
CAN.G424.95 Capsicum annuum HOM05D002578 ORTHO05D005154 1.2e-70 270.0 205 69.8
Duzib026G0002 Durio zibethinus HOM05D002578 ORTHO05D005154 2.0e-70 269.2 205 69.8
Duzib086G0007 Durio zibethinus HOM05D002578 ORTHO05D005154 2.0e-70 269.2 205 69.8
Duzib125G0004 Durio zibethinus HOM05D002578 ORTHO05D005154 2.0e-70 269.2 205 69.8
Duzib256G0002 Durio zibethinus HOM05D002578 ORTHO05D005154 2.0e-70 269.2 205 69.8
Hma1.2p1_0104F.1_g050140 Hydrangea macrophylla HOM05D002578 ORTHO05D005154 7.7e-70 267.3 205 69.8
Hma1.2p1_0298F.1_g117740 Hydrangea macrophylla HOM05D002578 ORTHO05D005154 7.7e-70 267.3 205 69.8
Hma1.2p1_0818F.1_g223306 Hydrangea macrophylla HOM05D002578 ORTHO05D005154 7.7e-70 267.3 205 69.8
PSO548G0101 Papaver somniferum HOM05D002578 ORTHO05D005154 1.7e-69 266.2 205 70.2
SalBow1G1132 Salvia bowleyana HOM05D002578 ORTHO05D005154 8.5e-69 263.8 205 68.8
CSS0047935 Camellia sinensis var. sinensis HOM05D002578 ORTHO05D005154 5.5e-68 261.2 205 68.8
Cpa.g.sc0.194 Carica papaya HOM05D002578 ORTHO05D005154 5.5e-68 261.2 205 68.3
LjContig00318g0021445 Lotus japonicus HOM05D002578 ORTHO05D005154 5.5e-68 261.2 205 67.8
LjContig00319g0008344 Lotus japonicus HOM05D002578 ORTHO05D005154 5.5e-68 261.2 205 67.8
LjContig00319g0015839 Lotus japonicus HOM05D002578 ORTHO05D005154 5.5e-68 261.2 205 67.8
Thhalv10010706m.g Eutrema salsugineum HOM05D002578 ORTHO05D005154 7.2e-68 260.8 205 68.3
DCAR_032524 Daucus carota HOM05D002578 ORTHO05D005154 1.6e-67 259.6 205 67.8
Gohir.A08G071000 Gossypium hirsutum HOM05D002578 ORTHO05D005154 3.6e-67 258.5 204 68.6
Lsat_1_v5_gn_5_50461 Lactuca sativa HOM05D002578 ORTHO05D005154 2.0e-65 252.7 205 66.3
Lsat_1_v5_gn_3_22620 Lactuca sativa HOM05D002578 ORTHO05D005154 1.7e-64 249.6 194 68.6
HanXRQChr01g0020181 Helianthus annuus HOM05D002578 ORTHO05D005154 6.3e-64 247.7 194 68.6
HanXRQChr04g0127451 Helianthus annuus HOM05D002578 ORTHO05D005154 6.3e-64 247.7 194 68.6
HanXRQChr10g0284421 Helianthus annuus HOM05D002578 ORTHO05D005154 6.3e-64 247.7 194 68.6
HanXRQChr10g0318021 Helianthus annuus HOM05D002578 ORTHO05D005154 6.3e-64 247.7 194 68.6
HanXRQChr12g0369891 Helianthus annuus HOM05D002578 ORTHO05D005154 6.3e-64 247.7 194 68.6
HanXRQCPg0580221 Helianthus annuus HOM05D002578 ORTHO05D005154 6.3e-64 247.7 194 68.6
Medtr4g051410 Medicago truncatula HOM05D002578 ORTHO05D005154 2.4e-63 245.7 201 64.7
CAN.G127.12 Capsicum annuum HOM05D002578 ORTHO05D005154 6.9e-63 244.2 205 62.9
Solyc00g500034.1 Solanum lycopersicum HOM05D002578 ORTHO05D005154 2.6e-62 242.3 194 67.0
arahy.Tifrunner.gnm1.ann1.I6CLRS Arachis hypogaea HOM05D002578 ORTHO05D005154 1.0e-61 240.4 205 65.4
Hund28761 Selenicereus undatus HOM05D002578 ORTHO05D005154 2.2e-61 239.2 194 63.4
Peaxi162Scf00299g00118 Petunia axillaris HOM05D002578 ORTHO05D005154 6.5e-61 237.7 194 67.0
Sc25g0002070 Simmondsia chinensis HOM05D002578 ORTHO05D005154 8.5e-61 237.3 194 66.0
Gohir.A09G101600 Gossypium hirsutum HOM05D002578 ORTHO05D005154 1.1e-60 236.9 133 89.5
Gohir.A12G090125 Gossypium hirsutum HOM05D002578 ORTHO05D005154 5.5e-60 234.6 133 88.7
Ah.10g027440 Amaranthus hybridus HOM05D002578 ORTHO05D005154 9.4e-60 233.8 196 63.3
AL2G20530 Arabidopsis lyrata HOM05D002578 ORTHO05D005154 1.6e-59 233.0 133 88.0
Hund08206 Selenicereus undatus HOM05D002578 ORTHO05D005154 1.6e-59 233.0 210 58.6
AL1G45070 Arabidopsis lyrata HOM05D002578 ORTHO05D005154 4.7e-59 231.5 133 87.2
Gohir.D01G102164 Gossypium hirsutum HOM05D002578 ORTHO05D005154 8.8e-58 227.3 128 89.1
Gohir.D06G105066 Gossypium hirsutum HOM05D002578 ORTHO05D005154 4.4e-57 224.9 165 71.5
QL93p1043_0025 Quercus lobata HOM05D002578 ORTHO05D005154 5.7e-57 224.6 130 87.7
Nitab4.5_0004430g0040 Nicotiana tabacum HOM05D002578 ORTHO05D005154 1.4e-55 219.9 205 60.5
Zm00001eb039190 Zea mays HOM05D002578 ORTHO05D005154 3.1e-55 218.8 213 55.4
Zm00001eb097380 Zea mays HOM05D002578 ORTHO05D005154 3.1e-55 218.8 213 55.4
Atru.chr11.440 Acer truncatum HOM05D002578 ORTHO05D005154 1.2e-54 216.9 129 85.3
Gohir.A12G024500 Gossypium hirsutum HOM05D002578 ORTHO05D005154 7.7e-54 214.2 173 66.5
Gorai.011G034100 Gossypium raimondii HOM05D002578 ORTHO05D005154 7.7e-54 214.2 122 89.3
Gorai.010G148900 Gossypium raimondii HOM05D002578 ORTHO05D005154 6.5e-53 211.1 179 64.8
ATR0306G002 Amborella trichopoda HOM05D002578 ORTHO05D005154 1.5e-52 209.9 114 92.1
Psat4g046880 Pisum sativum HOM05D002578 ORTHO05D005154 9.4e-52 207.2 212 54.2
Medtr0002s0790 Medicago truncatula HOM05D002578 ORTHO05D005154 1.2e-51 206.8 228 50.0
Sc16g0004460 Simmondsia chinensis HOM05D002578 ORTHO05D005154 8.0e-51 204.1 128 80.5
Eucgr.C03015 Eucalyptus grandis HOM05D002578 ORTHO05D005154 3.0e-50 202.2 173 61.3
Lalb_Chr23g0274261 Lupinus albus HOM05D002578 ORTHO05D005154 1.1e-49 200.3 127 80.3
Hund29530 Selenicereus undatus HOM05D002578 ORTHO05D005154 1.1e-49 200.3 210 52.9
HanXRQChr00c0593g0576401 Helianthus annuus HOM05D002578 ORTHO05D005154 7.4e-49 197.6 109 91.7
Hund30213 Selenicereus undatus HOM05D002578 ORTHO05D005154 4.8e-48 194.9 210 51.9
Hund29503 Selenicereus undatus HOM05D002578 ORTHO05D005154 9.1e-47 190.7 209 52.2
Ah.10g027320 Amaranthus hybridus HOM05D002578 ORTHO05D005154 1.6e-46 189.9 115 83.5
Gohir.A02G112702 Gossypium hirsutum HOM05D002578 ORTHO05D005154 1.6e-46 189.9 104 91.3
Nitab4.5_0013360g0010 Nicotiana tabacum HOM05D002578 ORTHO05D005154 5.9e-46 188.0 170 60.6
arahy.Tifrunner.gnm1.ann1.YJ6L74 Arachis hypogaea HOM05D002578 ORTHO05D005154 1.3e-45 186.8 171 62.0
arahy.Tifrunner.gnm1.ann1.EHS3F0 Arachis hypogaea HOM05D002578 ORTHO05D005154 2.9e-45 185.7 128 75.8
Sc09g0006250 Simmondsia chinensis HOM05D002578 ORTHO05D005154 3.8e-45 185.3 127 74.0
Medtr8g038470 Medicago truncatula HOM05D002578 ORTHO05D005154 8.5e-45 184.1 171 60.2
Solyc09g050066.1 Solanum lycopersicum HOM05D002578 ORTHO05D005154 5.5e-44 181.4 125 77.6
Psat5g168200 Pisum sativum HOM05D002578 ORTHO05D005154 3.6e-43 178.7 134 67.9
Psat3g190920 Pisum sativum HOM05D002578 ORTHO05D005154 8.0e-43 177.6 133 68.4
arahy.Tifrunner.gnm1.ann1.R0YUWC Arachis hypogaea HOM05D002578 ORTHO05D005154 1.4e-42 176.8 162 61.1
Lj2P1237T124 Lonicera japonica HOM05D002578 ORTHO05D005154 2.3e-42 176.0 109 81.7
Lj2P1239T79 Lonicera japonica HOM05D002578 ORTHO05D005154 2.3e-42 176.0 109 81.7
Lju5009P0T57 Lonicera japonica HOM05D002578 ORTHO05D005154 2.3e-42 176.0 109 81.7
Eucgr.E01404 Eucalyptus grandis HOM05D002578 ORTHO05D005154 2.0e-41 172.9 104 82.7
Solyc00g500153.1 Solanum lycopersicum HOM05D002578 ORTHO05D005154 2.2e-40 169.5 109 79.8
Gorai.012G056700 Gossypium raimondii HOM05D002578 ORTHO05D005154 1.8e-39 166.4 105 80.0
Lsat_1_v5_gn_5_168120 Lactuca sativa HOM05D002578 ORTHO05D005154 1.8e-39 166.4 109 78.9
Zm00001eb437960 Zea mays HOM05D002578 ORTHO05D005154 1.7e-37 159.8 181 50.8
Gohir.D04G051050 Gossypium hirsutum HOM05D002578 ORTHO05D005154 2.9e-37 159.1 105 76.2
AL2G21750 Arabidopsis lyrata HOM05D002578 ORTHO05D005154 1.5e-36 156.8 93 86.0
Zm00001eb434870 Zea mays HOM05D002578 ORTHO05D005154 7.2e-36 154.5 178 50.0
Zm00001eb435640 Zea mays HOM05D002578 ORTHO05D005154 7.2e-36 154.5 178 50.0
Zm00001eb439940 Zea mays HOM05D002578 ORTHO05D005154 7.2e-36 154.5 178 50.0
Zm00001eb439960 Zea mays HOM05D002578 ORTHO05D005154 7.2e-36 154.5 178 50.0
Zm00001eb440780 Zea mays HOM05D002578 ORTHO05D005154 7.2e-36 154.5 178 50.0
HanXRQChr11g0321131 Helianthus annuus HOM05D002578 ORTHO05D005154 4.7e-35 151.8 85 91.8
Potri.017G072340 Populus trichocarpa HOM05D002578 ORTHO05D005154 6.1e-35 151.4 141 58.9
SMO086G0021 Selaginella moellendorffii HOM05D002578 ORTHO05D005154 4.0e-34 148.7 211 41.2
Lalb_Chr13g0292561 Lupinus albus HOM05D002578 ORTHO05D005154 2.6e-33 146.0 85 84.7
Lalb_Chr17g0337521 Lupinus albus HOM05D002578 ORTHO05D005154 4.4e-33 145.2 96 78.1
Oeu062830.1 Olea europaea HOM05D002578 ORTHO05D005154 2.8e-32 142.5 134 57.5
AL5G19940 Arabidopsis lyrata HOM05D002578 ORTHO05D005154 1.4e-31 140.2 79 92.4
CsaV3_4G010600 Cucumis sativus L. HOM05D002578 ORTHO05D005154 4.5e-30 135.2 65 100.0
Eucgr.F03422 Eucalyptus grandis HOM05D002578 ORTHO05D005154 5.9e-30 134.8 89 77.5
Nn4g25225 Nelumbo nucifera HOM05D002578 ORTHO05D005154 1.9e-28 129.8 81 82.7
HanXRQChr14g0432301 Helianthus annuus HOM05D002578 ORTHO05D005154 2.5e-28 129.4 134 52.2
Hund07448 Selenicereus undatus HOM05D002578 ORTHO05D005154 5.5e-28 128.3 99 65.7
SEGI_06953 Sequoiadendron giganteum HOM05D000540 ORTHO05D000681 2.1e-27 126.3 113 58.4
SEGI_26563 Sequoiadendron giganteum HOM05D000540 ORTHO05D002320 2.1e-27 126.3 113 58.4
SEGI_30011 Sequoiadendron giganteum HOM05D000540 ORTHO05D000681 2.1e-27 126.3 113 58.4
SEGI_35211 Sequoiadendron giganteum HOM05D000540 ORTHO05D000681 2.1e-27 126.3 113 58.4
SEGI_36364 Sequoiadendron giganteum HOM05D000216 ORTHO05D003638 2.1e-27 126.3 113 58.4
SEGI_41075 Sequoiadendron giganteum HOM05D000540 ORTHO05D005154 2.1e-27 126.3 113 58.4
SEGI_07135 Sequoiadendron giganteum HOM05D000890 ORTHO05D000697 8.0e-27 124.4 113 57.5
TWI14G1004 Tripterygium wilfordii HOM05D002578 ORTHO05D005154 8.0e-27 124.4 93 67.7
SEGI_32412 Sequoiadendron giganteum HOM05D000540 ORTHO05D005154 1.8e-26 123.2 113 56.6
arahy.Tifrunner.gnm1.ann1.ID3W56 Arachis hypogaea HOM05D002578 ORTHO05D005154 8.9e-26 120.9 130 53.1
Nn1g08404 Nelumbo nucifera HOM05D002578 ORTHO05D005154 1.2e-25 120.6 61 95.1
SEGI_06984 Sequoiadendron giganteum HOM05D002578 ORTHO05D005154 5.7e-25 118.2 113 54.9
HanXRQChr05g0152541 Helianthus annuus HOM05D002578 ORTHO05D005154 7.5e-25 117.9 61 95.1
HanXRQChr11g0327001 Helianthus annuus HOM05D002578 ORTHO05D005154 7.5e-25 117.9 61 95.1
SEGI_12372 Sequoiadendron giganteum HOM05D000445 ORTHO05D005154 9.8e-25 117.5 103 58.3
RcHm_v2.0_Chr2g0118541 Rosa chinensis HOM05D002578 ORTHO05D005154 1.3e-24 117.1 61 93.4
MD14G1153600 Malus domestica HOM05D002578 ORTHO05D005154 2.2e-24 116.3 61 91.8
Migut.D01324 Erythranthe guttata HOM05D002578 ORTHO05D005154 2.8e-24 115.9 61 93.4
Zm00001eb115040 Zea mays HOM05D002578 ORTHO05D005154 4.9e-24 115.2 149 45.6
Eucgr.L01887 Eucalyptus grandis HOM05D002578 ORTHO05D005154 1.8e-23 113.2 64 90.6
Lj2A1234G110 Lonicera japonica HOM05D002578 ORTHO05D005154 4.1e-23 112.1 61 90.2
Gohir.D09G093200 Gossypium hirsutum HOM05D002578 ORTHO05D005154 7.0e-23 111.3 61 88.5
Nitab4.5_0001339g0110 Nicotiana tabacum HOM05D002578 ORTHO05D005154 7.0e-23 111.3 92 65.2
Psat6g181640 Pisum sativum HOM05D002578 ORTHO05D005154 7.8e-22 107.8 61 83.6
Gohir.A09G103050 Gossypium hirsutum HOM05D002578 ORTHO05D005154 1.0e-21 107.5 59 88.1
SEGI_32821 Sequoiadendron giganteum HOM05D002578 ORTHO05D004083 1.3e-21 107.1 82 64.6
Ciclev10006396m.g Citrus clementina HOM05D002578 ORTHO05D005154 3.9e-21 105.5 66 77.3
Mapoly0015s0207 Marchantia polymorpha HOM05D002578 ORTHO05D005154 1.9e-20 103.2 90 55.6
Lsat_1_v5_gn_3_113300 Lactuca sativa HOM05D002578 ORTHO05D005154 3.3e-20 102.4 122 48.4
Potri.002G235600 Populus trichocarpa HOM05D002578 ORTHO05D005154 9.5e-20 100.9 60 78.3
Zm00001eb435100 Zea mays HOM05D002578 ORTHO05D005154 1.8e-18 96.7 137 42.3
CsaV3_5G013710 Cucumis sativus L. HOM05D007755 ORTHO05D009866 3.7e-16 89.0 47 89.4
Ah.10g029000 Amaranthus hybridus HOM05D002578 ORTHO05D002698 1.4e-15 87.0 51 84.3
SEGI_09039 Sequoiadendron giganteum HOM05D002578 ORTHO05D004083 1.9e-15 86.7 85 55.3
SEGI_36078 Sequoiadendron giganteum HOM05D000540 ORTHO05D000681 2.4e-15 86.3 90 53.3
SEGI_31371 Sequoiadendron giganteum HOM05D000964 ORTHO05D003870 7.0e-15 84.7 85 55.3
SEGI_13221 Sequoiadendron giganteum HOM05D000540 ORTHO05D004018 1.6e-14 83.6 104 48.1
Cpa.g.sc301.3 Carica papaya HOM05D002578 ORTHO05D005820 3.5e-14 82.4 42 95.2
CiPaw.10G131300 Carya illinoinensis HOM05D002578 ORTHO05D005154 3.0e-13 79.3 109 47.7
Eucgr.A01255 Eucalyptus grandis HOM05D002578 ORTHO05D002698 3.9e-13 79.0 61 63.9
Nitab4.5_0005412g0040 Nicotiana tabacum HOM05D002578 ORTHO05D005154 2.5e-12 76.3 39 94.9
HanXRQChr16g0526141 Helianthus annuus HOM05D002578 ORTHO05D005154 7.3e-12 74.7 96 43.8
BraSC58t46504Z Brassica rapa HOM05D002578 ORTHO05D005154 2.6e-09 66.2 31 87.1
PGSC0003DMG400003499 Solanum tuberosum HOM05D002578 ORTHO05D005154 2.6e-09 66.2 31 87.1
CAN.G134.2 Capsicum annuum HOM05D002578 ORTHO05D005154 3.4e-09 65.9 31 87.1
Aqoxy5G00925 Aquilegia oxysepala HOM05D002578 ORTHO05D005154 1.7e-08 63.5 43 72.1
Lsat_1_v5_gn_5_168100 Lactuca sativa HOM05D002578 ORTHO05D005154 2.2e-08 63.2 72 45.8
Migut.D01327 Erythranthe guttata HOM05D002578 ORTHO05D005154 2.9e-08 62.8 31 83.9
HanXRQChr11g0321141 Helianthus annuus HOM05D002578 ORTHO05D002698 3.7e-08 62.4 30 83.3
Potri.012G047500 Populus trichocarpa HOM05D002578 ORTHO05D005154 4.9e-08 62.0 95 37.9
Sc25g0002540 Simmondsia chinensis HOM05D002578 ORTHO05D001488 4.9e-08 62.0 49 63.3
CANSAT16G0046 Cannabis sativa HOM05D001987 ORTHO05D006514 8.3e-08 61.2 105 34.3
Nn4g25226 Nelumbo nucifera HOM05D002578 ORTHO05D005154 1.1e-07 60.8 27 92.6
Nn7g37550 Nelumbo nucifera HOM05D002578 ORTHO05D005154 1.1e-07 60.8 27 92.6
Hund18006 Selenicereus undatus HOM05D002578 ORTHO05D005154 2.4e-07 59.7 61 57.4
arahy.Tifrunner.gnm1.ann1.HB4K1E Arachis hypogaea HOM05D002578 ORTHO05D005154 5.4e-07 58.5 31 80.6
Hund08116 Selenicereus undatus HOM05D002578 ORTHO05D005154 4.6e-06 55.5 38 68.4
Lalb_Chr25g0282891 Lupinus albus HOM05D002578 ORTHO05D005154 6.0e-06 55.1 30 76.7


User provided reference genes

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