Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C003259.2 Cucumis melo HOM05D003620 ORTHO05D004261 4.4e-141 504.6 253 100.0
MELO3C018674.2 Cucumis melo HOM05D003620 ORTHO05D004261 3.0e-97 359.0 372 57.3
CsaV3_7G006180 Cucumis sativus L. HOM05D003620 ORTHO05D004261 2.5e-96 355.9 372 57.0
Sed0005951 Sechium edule HOM05D003620 ORTHO05D004261 5.9e-93 344.7 372 55.1
ClCG09G013430 Citrullus lanatus HOM05D003620 ORTHO05D004261 3.2e-91 339.0 388 52.8
MD08G1222700 Malus domestica HOM05D003620 ORTHO05D004261 2.3e-81 306.2 372 49.2
Prupe.1G560600 Prunus persica HOM05D003620 ORTHO05D004261 2.3e-81 306.2 372 48.9
Cfa005564 Carpinus fangiana HOM05D003620 ORTHO05D004261 2.0e-80 303.1 372 48.7
CSS0011415 Camellia sinensis var. sinensis HOM05D003620 ORTHO05D004261 3.3e-80 302.4 372 47.8
Lsat_1_v5_gn_7_80501 Lactuca sativa HOM05D003620 ORTHO05D004261 7.4e-80 301.2 338 52.4
Phvul.006G208800 Phaseolus vulgaris HOM05D003620 ORTHO05D004261 9.7e-80 300.8 372 47.6
VMungo0540G0770 Vigna mungo HOM05D003620 ORTHO05D004261 1.7e-79 300.1 372 47.8
Lalb_Chr18g0060681 Lupinus albus HOM05D003620 ORTHO05D004261 2.2e-79 299.7 372 47.8
FAN08G3618 Fragaria x ananassa HOM05D003620 ORTHO05D004261 4.8e-79 298.5 372 48.4
CiPaw.05G039200 Carya illinoinensis HOM05D003620 ORTHO05D004261 6.3e-79 298.1 372 48.1
Ca_00113_v3 Cicer arietinum L. HOM05D003620 ORTHO05D004261 6.3e-79 298.1 372 47.8
FAN04G1518 Fragaria x ananassa HOM05D003620 ORTHO05D004261 6.3e-79 298.1 372 48.1
CSS0027167 Camellia sinensis var. sinensis HOM05D003620 ORTHO05D004261 1.1e-78 297.4 372 48.1
Thecc.02G144000 Theobroma cacao HOM05D003620 ORTHO05D004261 1.1e-78 297.4 372 48.1
FvH4_5g30530 Fragaria vesca HOM05D003620 ORTHO05D004261 1.4e-78 297.0 372 48.1
FAN18G1779 Fragaria x ananassa HOM05D003620 ORTHO05D004261 1.4e-78 297.0 372 48.1
Lj6g0005534 Lotus japonicus HOM05D003620 ORTHO05D004261 1.4e-78 297.0 372 47.8
Glyma.08G181200 Glycine max HOM05D003620 ORTHO05D004261 2.4e-78 296.2 372 47.8
MBI06_g29671_MAGBIO Magnolia biondii HOM05D003620 ORTHO05D004261 2.4e-78 296.2 330 51.2
THA.LOC104817775 Tarenaya hassleriana HOM05D003620 ORTHO05D004261 2.4e-78 296.2 372 47.3
Nn1g06259 Nelumbo nucifera HOM05D003620 ORTHO05D004261 3.1e-78 295.8 372 47.8
TPR.G19731 Trifolium pratense HOM05D003620 ORTHO05D004261 5.3e-78 295.0 372 47.6
Lsat_1_v5_gn_9_117920 Lactuca sativa HOM05D003620 ORTHO05D004261 1.2e-77 293.9 372 47.8
CANSAT11G1106 Cannabis sativa HOM05D003620 ORTHO05D004261 1.5e-77 293.5 372 47.6
RcHm_v2.0_Chr7g0225351 Rosa chinensis HOM05D003620 ORTHO05D004261 2.6e-77 292.7 372 47.3
Gohir.A12G013800 Gossypium hirsutum HOM05D003620 ORTHO05D004261 7.7e-77 291.2 372 47.3
Medtr2g008190 Medicago truncatula HOM05D003620 ORTHO05D004261 1.3e-76 290.4 372 47.3
HanXRQChr11g0337651 Helianthus annuus HOM05D003620 ORTHO05D004261 2.2e-76 289.7 372 46.8
Potri.003G061700 Populus trichocarpa HOM05D003620 ORTHO05D004261 2.2e-76 289.7 372 46.8
Thhalv10024661m.g Eutrema salsugineum HOM05D003620 ORTHO05D004261 3.8e-76 288.9 372 46.5
Potri.001G172400 Populus trichocarpa HOM05D003620 ORTHO05D004261 3.8e-76 288.9 372 46.8
Gorai.008G014600 Gossypium raimondii HOM05D003620 ORTHO05D004261 5.0e-76 288.5 372 47.0
TWI14G0354 Tripterygium wilfordii HOM05D003620 ORTHO05D004261 5.0e-76 288.5 372 47.6
ECA236G2397 Erigeron canadensis HOM05D003620 ORTHO05D004261 6.5e-76 288.1 372 47.3
Manes.10G117200 Manihot esculenta HOM05D003620 ORTHO05D004261 6.5e-76 288.1 372 46.8
CANSAT11G0919 Cannabis sativa HOM05D003620 ORTHO05D004261 8.5e-76 287.7 372 47.0
Gohir.D12G014500 Gossypium hirsutum HOM05D003620 ORTHO05D004261 8.5e-76 287.7 372 47.0
Duzib132G0147 Durio zibethinus HOM05D003620 ORTHO05D004261 1.1e-75 287.3 367 47.1
Psat1g218440 Pisum sativum HOM05D003620 ORTHO05D004261 1.1e-75 287.3 372 46.8
Atru.chr6.881 Acer truncatum HOM05D003620 ORTHO05D004261 1.9e-75 286.6 372 46.8
AT5G57190 Arabidopsis thaliana HOM05D003620 ORTHO05D004261 1.9e-75 286.6 372 46.2
BraA10t43545Z Brassica rapa HOM05D003620 ORTHO05D004261 1.9e-75 286.6 372 45.7
Sp6g18920 Schrenkiella parvula HOM05D003620 ORTHO05D004261 1.9e-75 286.6 372 46.0
THA.LOC104811774 Tarenaya hassleriana HOM05D003620 ORTHO05D004261 3.2e-75 285.8 372 46.8
AL7G27030 Arabidopsis lyrata HOM05D003620 ORTHO05D004261 5.5e-75 285.0 372 46.2
Carub.0007s1498 Capsella rubella HOM05D003620 ORTHO05D004261 5.5e-75 285.0 372 46.0
Sc09g0004430 Simmondsia chinensis HOM05D003620 ORTHO05D004261 5.5e-75 285.0 372 46.2
MSTRG.16561 Avicennia marina HOM05D003620 ORTHO05D004261 7.2e-75 284.6 372 46.0
BcaC04g19991 Brassica carinata HOM05D003620 ORTHO05D004261 7.2e-75 284.6 372 45.7
BcaNung03773 Brassica carinata HOM05D003620 ORTHO05D004261 7.2e-75 284.6 372 46.2
C09p49020 Brassica napus HOM05D003620 ORTHO05D004261 7.2e-75 284.6 372 45.7
BolC9t57753H Brassica oleracea HOM05D003620 ORTHO05D004261 7.2e-75 284.6 372 45.7
Thhalv10012950m.g Eutrema salsugineum HOM05D003620 ORTHO05D004261 7.2e-75 284.6 372 45.7
A10p14580 Brassica napus HOM05D003620 ORTHO05D004261 9.4e-75 284.3 372 45.4
CARHR233480 Cardamine hirsuta HOM05D003620 ORTHO05D004261 9.4e-75 284.3 372 46.0
CARHR270980 Cardamine hirsuta HOM05D003620 ORTHO05D004261 9.4e-75 284.3 372 45.7
COL.COLO4_20874 Corchorus olitorius HOM05D003620 ORTHO05D004261 1.2e-74 283.9 367 47.1
Aa31LG3G330 Aethionema arabicum HOM05D003620 ORTHO05D004261 1.6e-74 283.5 372 46.0
CAN.G523.97 Capsicum annuum HOM05D003620 ORTHO05D004261 1.6e-74 283.5 372 45.7
Peaxi162Scf00001g00523 Petunia axillaris HOM05D003620 ORTHO05D004261 1.6e-74 283.5 372 46.2
BcaC09g50725 Brassica carinata HOM05D003620 ORTHO05D004261 2.1e-74 283.1 372 46.0
C01p21590 Brassica napus HOM05D003620 ORTHO05D004261 2.1e-74 283.1 372 46.0
BolC1t02078H Brassica oleracea HOM05D003620 ORTHO05D004261 2.1e-74 283.1 372 46.0
BcaB08g36077 Brassica carinata HOM05D003620 ORTHO05D004261 2.7e-74 282.7 372 45.4
A01p17230 Brassica napus HOM05D003620 ORTHO05D004261 2.7e-74 282.7 372 46.0
BraA01t01679Z Brassica rapa HOM05D003620 ORTHO05D004261 2.7e-74 282.7 372 46.0
Sabra01G0139300 Salix brachista HOM05D003620 ORTHO05D004261 3.6e-74 282.3 372 47.3
ECA240G1941 Erigeron canadensis HOM05D003620 ORTHO05D004261 4.7e-74 282.0 372 46.2
Eucgr.G00656 Eucalyptus grandis HOM05D003620 ORTHO05D004261 7.9e-74 281.2 372 45.4
Lj6g0009012 Lotus japonicus HOM05D003620 ORTHO05D004261 1.4e-73 280.4 316 52.5
PGR042G1212 Punica granatum HOM05D003620 ORTHO05D004261 1.8e-73 280.0 372 44.9
Actinidia38967 Actinidia chinensis HOM05D003620 ORTHO05D004261 2.3e-73 279.6 372 46.2
AL8G33150 Arabidopsis lyrata HOM05D003620 ORTHO05D004261 2.3e-73 279.6 373 45.3
Nitab4.5_0007987g0020 Nicotiana tabacum HOM05D003620 ORTHO05D004261 3.9e-73 278.9 372 45.4
TAR625G1066 Trochodendron aralioides HOM05D003620 ORTHO05D004261 3.9e-73 278.9 372 45.4
AT4G25970 Arabidopsis thaliana HOM05D003620 ORTHO05D004261 5.2e-73 278.5 372 45.7
Oeu037206.2 Olea europaea HOM05D003620 ORTHO05D004261 8.8e-73 277.7 372 45.7
Carub.0008s1770 Capsella rubella HOM05D003620 ORTHO05D004261 7.4e-72 274.6 372 45.2
Migut.B00643 Erythranthe guttata HOM05D003620 ORTHO05D004261 1.3e-71 273.9 373 45.3
Sabra03G0035800 Salix brachista HOM05D003620 ORTHO05D004261 3.5e-69 265.8 436 39.9
Aqoxy6G00354 Aquilegia oxysepala HOM05D003620 ORTHO05D004261 5.9e-69 265.0 372 45.2
AUR62004784 Chenopodium quinoa HOM05D003620 ORTHO05D004261 3.8e-68 262.3 372 43.3
Solyc01g104880.3 Solanum lycopersicum HOM05D003620 ORTHO05D004261 5.0e-68 261.9 372 44.6
Sopen01g047400 Solanum pennellii HOM05D003620 ORTHO05D004261 5.0e-68 261.9 372 44.6
Actinidia00242 Actinidia chinensis HOM05D003620 ORTHO05D004261 6.5e-68 261.5 365 46.0
QL02p098754 Quercus lobata HOM05D003620 ORTHO05D004261 8.5e-68 261.2 394 42.9
ATR1136G049 Amborella trichopoda HOM05D003620 ORTHO05D004261 1.5e-67 260.4 372 43.5
HanXRQChr03g0065791 Helianthus annuus HOM05D003620 ORTHO05D004261 5.5e-67 258.5 372 43.5
Manes.07G024800 Manihot esculenta HOM05D003620 ORTHO05D004261 2.1e-66 256.5 372 43.3
Dinv24230 Davidia involucrata HOM05D003620 ORTHO05D004261 4.7e-66 255.4 372 43.8
FAN13G1243 Fragaria x ananassa HOM05D003620 ORTHO05D004261 1.0e-65 254.2 344 45.1
PSO541G1613 Papaver somniferum HOM05D003620 ORTHO05D004261 1.3e-63 247.3 372 42.5
EL10Ac4g08941 Beta vulgaris HOM05D003620 ORTHO05D004261 1.7e-63 246.9 372 41.7
PSO675G2802 Papaver somniferum HOM05D003620 ORTHO05D004261 8.2e-63 244.6 372 42.2
Haze_10770 Corylus avellana HOM05D003620 ORTHO05D004261 1.8e-62 243.4 211 62.1
HPP92_019398 Vanilla planifolia HOM05D003620 ORTHO05D004261 2.4e-62 243.0 372 42.2
AUR62003395 Chenopodium quinoa HOM05D003620 ORTHO05D004261 3.1e-62 242.7 340 44.4
SalBow5G2235 Salvia bowleyana HOM05D003620 ORTHO05D004261 4.1e-62 242.3 487 35.3
Nitab4.5_0008610g0050 Nicotiana tabacum HOM05D003620 ORTHO05D004261 1.2e-61 240.7 351 43.6
CDE08G1148 Ceratophyllum demersum HOM05D003620 ORTHO05D004261 2.7e-61 239.6 372 41.1
Mapoly0064s0044 Marchantia polymorpha HOM05D003620 ORTHO05D004261 1.0e-60 237.7 373 38.9
Os01g0959800 Oryza sativa ssp. japonica HOM05D003620 ORTHO05D004261 3.2e-59 232.6 343 41.4
Rhsim11G0134200 Rhododendron simsii HOM05D003620 ORTHO05D004261 5.5e-59 231.9 348 43.7
AagrBONN_evm.TU.Sc2ySwM_228.3970 Anthoceros agrestis HOM05D003620 ORTHO05D004261 4.7e-58 228.8 401 37.4
Peaxi162Scf00152g01227 Petunia axillaris HOM05D003620 ORTHO05D004261 4.7e-58 228.8 371 40.7
DCAR_001444 Daucus carota HOM05D003620 ORTHO05D004261 1.8e-57 226.9 268 50.4
SMO244G0007 Selaginella moellendorffii HOM05D003620 ORTHO05D004261 5.7e-56 221.9 371 37.7
Pp3c15_7420 Physcomitrium patens HOM05D003620 ORTHO05D004261 1.4e-54 217.2 369 38.5
GSVIVG01029732001 Vitis vinifera HOM05D003620 ORTHO05D004261 5.9e-53 211.8 188 61.7
Aa31LG3G13090 Aethionema arabicum HOM05D003620 ORTHO05D004261 2.9e-52 209.5 172 62.8
SalBow5G2754 Salvia bowleyana HOM05D003620 ORTHO05D004261 5.0e-52 208.8 193 57.5
vmacro01806 Vaccinium macrocarpon HOM05D003620 ORTHO05D004261 2.5e-51 206.5 188 59.6
CsaV3_3G020620 Cucumis sativus L. HOM05D003620 ORTHO05D004261 4.2e-51 205.7 173 65.9
Cc02_g21940 Coffea canephora HOM05D003620 ORTHO05D004261 2.1e-50 203.4 188 58.0
Oeu047368.1 Olea europaea HOM05D003620 ORTHO05D004261 8.9e-49 198.0 177 61.0
Ciclev10000710m.g Citrus clementina HOM05D003620 ORTHO05D004261 2.6e-48 196.4 302 41.7
AL161U10010 Arabidopsis lyrata HOM05D003620 ORTHO05D004261 7.5e-48 194.9 189 56.1
Zm00001eb362570 Zea mays HOM05D003620 ORTHO05D004261 7.3e-43 178.3 303 37.6
Cpa.g.sc845.5 Carica papaya HOM05D003620 ORTHO05D004261 3.0e-36 156.4 127 63.0
Lj5C243T9 Lonicera japonica HOM05D003620 ORTHO05D004261 9.5e-35 151.4 159 52.2
CsaV3_6G003040 Cucumis sativus L. HOM05D003620 ORTHO05D004261 1.8e-33 147.1 114 71.9
Hund22190 Selenicereus undatus HOM05D003620 ORTHO05D004261 6.8e-33 145.2 145 58.6
Glyma.15G051100 Glycine max HOM05D003620 ORTHO05D004261 8.9e-33 144.8 222 40.1
Haze_10769 Corylus avellana HOM05D003620 ORTHO05D004261 2.2e-31 140.2 81 84.0
BolC9t54929H Brassica oleracea HOM05D003620 ORTHO05D004261 1.0e-28 131.3 174 44.3
C09p20220 Brassica napus HOM05D003620 ORTHO05D004261 1.7e-28 130.6 164 45.7
CBR_g4358 Chara braunii HOM05D003620 ORTHO05D004261 6.6e-28 128.6 173 45.1
Cc02_g21930 Coffea canephora HOM05D003620 ORTHO05D004261 6.6e-28 128.6 95 71.6
GSVIVG01029733001 Vitis vinifera HOM05D003620 ORTHO05D004261 5.6e-27 125.6 81 77.8
SGA_v2.0_scaffold83G26271 Striga asiatica HOM05D003620 ORTHO05D004261 2.8e-26 123.2 81 72.8
Zm00001eb011090 Zea mays HOM05D003620 ORTHO05D004261 2.8e-26 123.2 81 71.6
Zm00001eb141090 Zea mays HOM05D003620 ORTHO05D004261 1.3e-23 114.4 81 67.9
BcaC04g22352 Brassica carinata HOM05D003620 ORTHO05D004261 2.2e-23 113.6 92 60.9
SEGI_27738 Sequoiadendron giganteum HOM05D003620 ORTHO05D004261 1.0e-20 104.8 99 57.6
arahy.Tifrunner.gnm1.ann1.F2S38R Arachis hypogaea HOM05D003620 ORTHO05D004261 1.3e-20 104.4 89 60.7
Lj5C243G7 Lonicera japonica HOM05D003620 ORTHO05D004261 5.6e-19 99.0 86 60.5
SalBow5G0451 Salvia bowleyana HOM05D003620 ORTHO05D004261 4.0e-17 92.8 63 71.4
arahy.Tifrunner.gnm1.ann1.3Q8P58 Arachis hypogaea HOM05D003620 ORTHO05D004261 1.2e-16 91.3 122 48.4
C07p07760 Brassica napus HOM05D003620 ORTHO05D004261 4.9e-15 85.9 120 44.2
CBR_g4360 Chara braunii HOM05D003620 ORTHO05D004261 4.9e-15 85.9 84 51.2
BolC7t41195H Brassica oleracea HOM05D003620 ORTHO05D004261 1.4e-14 84.3 93 48.4
Lsat_1_v5_gn_4_179761 Lactuca sativa HOM05D003620 ORTHO05D004261 9.2e-14 81.6 98 50.0
MELO3C026793.2 Cucumis melo HOM05D003620 ORTHO05D004261 2.1e-13 80.5 56 71.4
arahy.Tifrunner.gnm1.ann1.UIRN9X Arachis hypogaea HOM05D003620 ORTHO05D004261 3.9e-12 76.3 64 64.1
C07p07770 Brassica napus HOM05D003620 ORTHO05D004261 1.5e-11 74.3 108 41.7
Cre02.g119600 Chlamydomonas reinhardtii HOM05D003620 ORTHO05D004261 2.8e-10 70.1 197 32.5
C07p07780 Brassica napus HOM05D003620 ORTHO05D004261 3.1e-09 66.6 55 60.0
BolC7t41196H Brassica oleracea HOM05D003620 ORTHO05D004261 3.1e-09 66.6 55 60.0
GSVIVG01038340001 Vitis vinifera HOM05D003620 ORTHO05D004261 4.0e-09 66.2 82 45.1
PRCOL_00006167 Prasinoderma coloniale HOM05D003620 ORTHO05D004261 2.2e-07 60.5 204 29.4
Oeu047369.1 Olea europaea HOM05D003620 ORTHO05D004261 1.1e-06 58.2 30 86.7
Lsat_1_v5_gn_4_137320 Lactuca sativa HOM05D000154 ORTHO05D000092 1.9e-06 57.4 128 35.2


User provided reference genes

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