Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C003216.2 Cucumis melo HOM05D007241 ORTHO05D009142 1.5e-178 629.4 327 100.0
CsaV3_4G025900 Cucumis sativus L. HOM05D007241 ORTHO05D009142 3.4e-170 601.7 327 95.1
ClCG04G007350 Citrullus lanatus HOM05D007241 ORTHO05D009142 1.1e-160 570.1 337 89.9
Sed0022131 Sechium edule HOM05D007241 ORTHO05D009142 3.8e-153 545.0 326 85.9
GSVIVG01034032001 Vitis vinifera HOM05D007241 ORTHO05D009142 5.1e-105 385.2 347 61.1
Duzib093G2007 Durio zibethinus HOM05D007241 ORTHO05D009142 1.1e-102 377.5 346 59.8
CiPaw.10G153200 Carya illinoinensis HOM05D007241 ORTHO05D009142 1.8e-102 376.7 346 60.7
Thecc.05G024800 Theobroma cacao HOM05D007241 ORTHO05D009142 3.1e-102 375.9 345 60.0
Cpa.g.sc56.88 Carica papaya HOM05D007241 ORTHO05D009142 2.0e-101 373.2 352 57.1
PGR004G2498 Punica granatum HOM05D007241 ORTHO05D009142 2.0e-101 373.2 341 59.5
Duzib106G0374 Durio zibethinus HOM05D007241 ORTHO05D009142 5.8e-101 371.7 346 60.4
Gorai.012G110300 Gossypium raimondii HOM05D007241 ORTHO05D009142 1.1e-99 367.5 353 58.4
Haze_20925 Corylus avellana HOM05D007241 ORTHO05D009142 1.9e-99 366.7 346 57.8
Gohir.D04G127300 Gossypium hirsutum HOM05D007241 ORTHO05D009142 3.2e-99 365.9 359 57.4
Atru.chr8.2123 Acer truncatum HOM05D007241 ORTHO05D009142 1.2e-98 364.0 331 60.4
Prupe.6G268100 Prunus persica HOM05D007241 ORTHO05D009142 1.2e-98 364.0 337 57.9
Nn2g11326 Nelumbo nucifera HOM05D007241 ORTHO05D009142 6.0e-98 361.7 346 59.8
CSS0004399 Camellia sinensis var. sinensis HOM05D007241 ORTHO05D009142 7.8e-98 361.3 343 59.5
CANSAT35G2041 Cannabis sativa HOM05D007241 ORTHO05D009142 1.3e-97 360.5 325 57.8
THA.LOC104823276 Tarenaya hassleriana HOM05D007241 ORTHO05D009142 6.6e-97 358.2 346 56.6
Eucgr.K03006 Eucalyptus grandis HOM05D007241 ORTHO05D009142 1.2e-95 354.0 356 55.3
Oeu015010.1 Olea europaea HOM05D007241 ORTHO05D009142 1.4e-94 350.5 309 60.5
Solyc09g011830.4 Solanum lycopersicum HOM05D007241 ORTHO05D009142 4.0e-94 349.0 347 55.3
TAR633G0637 Trochodendron aralioides HOM05D007241 ORTHO05D009142 5.2e-94 348.6 352 57.4
Lalb_Chr13g0291331 Lupinus albus HOM05D007241 ORTHO05D009142 1.2e-93 347.4 337 55.8
Lj3g0002129 Lotus japonicus HOM05D007241 ORTHO05D009142 1.5e-93 347.1 327 56.3
Sabra06G0072600 Salix brachista HOM05D007241 ORTHO05D009142 4.4e-93 345.5 344 56.4
Sopen09g006650 Solanum pennellii HOM05D007241 ORTHO05D009142 7.6e-93 344.7 347 54.5
Ciclev10012141m.g Citrus clementina HOM05D007241 ORTHO05D009142 9.9e-93 344.4 344 56.4
FvH4_6g12350 Fragaria vesca HOM05D007241 ORTHO05D009142 1.7e-92 343.6 339 56.6
FAN02G0490 Fragaria x ananassa HOM05D007241 ORTHO05D009142 1.7e-92 343.6 339 56.3
Potri.006G094800 Populus trichocarpa HOM05D007241 ORTHO05D009142 1.7e-92 343.6 344 56.1
Thhalv10021091m.g Eutrema salsugineum HOM05D007241 ORTHO05D009142 2.2e-92 343.2 343 55.1
FAN14G0673 Fragaria x ananassa HOM05D007241 ORTHO05D009142 6.4e-92 341.7 338 56.5
Aa31LG3G1690 Aethionema arabicum HOM05D007241 ORTHO05D009142 8.4e-92 341.3 342 55.0
CAN.G1233.2 Capsicum annuum HOM05D007241 ORTHO05D009142 1.1e-91 340.9 338 55.6
BolC1t05471H Brassica oleracea HOM05D007241 ORTHO05D009142 1.4e-91 340.5 342 55.8
RcHm_v2.0_Chr3g0464151 Rosa chinensis HOM05D007241 ORTHO05D009142 1.4e-91 340.5 341 54.8
BcaC09g48056 Brassica carinata HOM05D007241 ORTHO05D009142 1.9e-91 340.1 342 55.6
FAN05G2185 Fragaria x ananassa HOM05D007241 ORTHO05D009142 2.4e-91 339.7 339 55.8
PGSC0003DMG400020362 Solanum tuberosum HOM05D007241 ORTHO05D009142 3.2e-91 339.3 341 55.1
Cc06_g01830 Coffea canephora HOM05D007241 ORTHO05D009142 1.2e-90 337.4 340 55.0
Glyma.01G109100 Glycine max HOM05D007241 ORTHO05D009142 1.2e-90 337.4 342 55.6
AUR62015997 Chenopodium quinoa HOM05D007241 ORTHO05D009142 2.1e-90 336.7 342 56.4
Carub.0003s0832 Capsella rubella HOM05D007241 ORTHO05D009142 2.7e-90 336.3 337 55.2
Manes.08G083700 Manihot esculenta HOM05D007241 ORTHO05D009142 3.5e-90 335.9 343 55.7
BcaC09g48011 Brassica carinata HOM05D007241 ORTHO05D009142 4.6e-90 335.5 334 56.3
Dinv35525 Davidia involucrata HOM05D007241 ORTHO05D009142 4.6e-90 335.5 332 58.4
BraA01t04312Z Brassica rapa HOM05D007241 ORTHO05D009142 6.0e-90 335.1 342 55.0
Peaxi162Scf00427g00616 Petunia axillaris HOM05D007241 ORTHO05D009142 6.0e-90 335.1 343 54.5
Nitab4.5_0007671g0010 Nicotiana tabacum HOM05D007241 ORTHO05D009142 7.8e-90 334.7 343 53.4
Hma1.2p1_0671F.1_g200780 Hydrangea macrophylla HOM05D007241 ORTHO05D009142 1.0e-89 334.3 325 58.8
CARHR083550 Cardamine hirsuta HOM05D007241 ORTHO05D009142 3.0e-89 332.8 339 54.6
MSTRG.5609 Avicennia marina HOM05D007241 ORTHO05D009142 3.9e-89 332.4 335 55.5
Nitab4.5_0000008g0420 Nicotiana tabacum HOM05D007241 ORTHO05D009142 8.7e-89 331.3 343 53.9
AT3G09210 Arabidopsis thaliana HOM05D007241 ORTHO05D009142 1.5e-88 330.5 341 54.5
AL3G20320 Arabidopsis lyrata HOM05D007241 ORTHO05D009142 2.5e-88 329.7 342 54.1
EL10Ac3g05675 Beta vulgaris HOM05D007241 ORTHO05D009142 3.3e-88 329.3 282 62.1
Gohir.A04G087000 Gossypium hirsutum HOM05D007241 ORTHO05D009142 3.3e-88 329.3 346 54.9
MBI14_g28606_MAGBIO Magnolia biondii HOM05D007241 ORTHO05D009142 5.6e-88 328.6 339 54.0
Sp3g07590 Schrenkiella parvula HOM05D007241 ORTHO05D009142 1.6e-87 327.0 333 54.1
Ah.07g207300 Amaranthus hybridus HOM05D007241 ORTHO05D009142 2.1e-87 326.6 346 54.0
Sc22g0004510 Simmondsia chinensis HOM05D007241 ORTHO05D009142 1.8e-86 323.6 320 56.9
TWI74G0988 Tripterygium wilfordii HOM05D007241 ORTHO05D009142 1.8e-86 323.6 351 53.8
Migut.J00242 Erythranthe guttata HOM05D007241 ORTHO05D009142 8.4e-84 314.7 330 53.3
VMungo0331G1333 Vigna mungo HOM05D007241 ORTHO05D009142 1.2e-82 310.8 342 52.3
vmacro20223 Vaccinium macrocarpon HOM05D007241 ORTHO05D009142 2.7e-82 309.7 350 51.1
SGA_v2.0_scaffold85G26792 Striga asiatica HOM05D007241 ORTHO05D009142 4.6e-82 308.9 333 51.4
Phvul.010G006200 Phaseolus vulgaris HOM05D007241 ORTHO05D009142 1.0e-81 307.8 339 50.7
MD04G1143600 Malus domestica HOM05D007241 ORTHO05D009142 1.3e-81 307.4 317 56.2
Aqoxy1G00764 Aquilegia oxysepala HOM05D007241 ORTHO05D009142 2.5e-80 303.1 343 51.3
Hund04733 Selenicereus undatus HOM05D007241 ORTHO05D009142 4.3e-80 302.4 342 53.2
Psat7g241800 Pisum sativum HOM05D007241 ORTHO05D009142 1.3e-79 300.8 343 49.9
arahy.Tifrunner.gnm1.ann1.IV4I8P Arachis hypogaea HOM05D007241 ORTHO05D009142 1.6e-79 300.4 288 53.8
SalBow3G1957 Salvia bowleyana HOM05D007241 ORTHO05D009142 1.6e-79 300.4 295 53.9
unitig_749.g14176 Utricularia gibba HOM05D007241 ORTHO05D009142 1.6e-79 300.4 323 51.4
PSO063G4791 Papaver somniferum HOM05D007241 ORTHO05D009142 3.6e-79 299.3 351 50.7
Lsat_1_v5_gn_2_72881 Lactuca sativa HOM05D007241 ORTHO05D009142 1.5e-77 293.9 321 48.6
HanXRQChr10g0300011 Helianthus annuus HOM05D007241 ORTHO05D009142 5.8e-77 292.0 277 53.4
Actinidia13799 Actinidia chinensis HOM05D007241 ORTHO05D009142 9.9e-77 291.2 317 53.9
DCAR_010398 Daucus carota HOM05D007241 ORTHO05D009142 3.8e-76 289.3 385 44.9
Ca_20114_v3 Cicer arietinum L. HOM05D007241 ORTHO05D009142 2.7e-74 283.1 393 44.5
Medtr4g019060 Medicago truncatula HOM05D007241 ORTHO05D009142 6.0e-74 282.0 345 47.0
ATR0618G224 Amborella trichopoda HOM05D007241 ORTHO05D009142 1.9e-72 276.9 340 48.8
ECA233G2042 Erigeron canadensis HOM05D007241 ORTHO05D009142 8.1e-71 271.6 274 51.1
arahy.Tifrunner.gnm1.ann1.D4R6TJ Arachis hypogaea HOM05D007241 ORTHO05D009142 9.0e-70 268.1 333 45.9
Rhsim05G0202600 Rhododendron simsii HOM05D007241 ORTHO05D009142 1.0e-68 264.6 342 48.0
HPP92_014289 Vanilla planifolia HOM05D007241 ORTHO05D009142 6.9e-62 241.9 230 52.2
Os03g0825500 Oryza sativa ssp. japonica HOM05D007241 ORTHO05D009142 1.9e-59 233.8 320 43.1
AUR62021204 Chenopodium quinoa HOM05D007241 ORTHO05D009142 6.3e-55 218.8 342 45.3
Zm00001eb063100 Zea mays HOM05D007241 ORTHO05D009142 6.5e-52 208.8 283 41.7
CDE04G1578 Ceratophyllum demersum HOM05D007241 ORTHO05D009142 1.4e-51 207.6 219 51.1
arahy.Tifrunner.gnm1.ann1.4L01Q9 Arachis hypogaea HOM05D007241 ORTHO05D009142 2.0e-48 197.2 201 50.2
TPR.G8187 Trifolium pratense HOM05D007241 ORTHO05D009142 6.9e-46 188.7 281 42.7
MD12G1157800 Malus domestica HOM05D007241 ORTHO05D009142 3.0e-33 146.7 259 39.8
COL.COLO4_14646 Corchorus olitorius HOM05D007241 ORTHO05D009142 2.8e-31 140.2 138 56.5
Mapoly0003s0142 Marchantia polymorpha HOM05D007241 ORTHO05D009142 2.4e-30 137.1 315 32.1
TPR.G40038 Trifolium pratense HOM05D007241 ORTHO05D009142 5.9e-29 132.5 96 60.4
Lj3A958T74 Lonicera japonica HOM05D007241 ORTHO05D009142 3.8e-28 129.8 134 56.0
Lj3A958T75 Lonicera japonica HOM05D007241 ORTHO05D009142 1.1e-22 111.7 123 50.4
Pp3c24_19950 Physcomitrium patens HOM05D007241 ORTHO05D009142 5.4e-22 109.4 287 28.2
COL.COLO4_14645 Corchorus olitorius HOM05D007241 ORTHO05D009142 2.7e-21 107.1 131 54.2
CBR_g25746 Chara braunii HOM05D000019 ORTHO05D000048 1.0e-20 105.1 300 27.3
BcaB05g24622 Brassica carinata HOM05D007241 ORTHO05D009142 3.1e-14 83.6 118 39.8
SEGI_13087 Sequoiadendron giganteum HOM05D007241 ORTHO05D009142 4.5e-13 79.7 90 44.4
TAR629G1375 Trochodendron aralioides HOM05D007241 ORTHO05D009142 1.2e-10 71.6 52 67.3
SMO164G0023 Selaginella moellendorffii HOM05D007241 ORTHO05D009142 5.7e-08 62.8 321 24.3
FAN28G2275 Fragaria x ananassa HOM05D000356 ORTHO05D000265 1.4e-06 58.2 100 44.0


User provided reference genes

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