Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C001556.2 Cucumis melo HOM05D004464 ORTHO05D005135 2.7e-39 164.9 82 100.0
CsaV3_4G010040 Cucumis sativus L. HOM05D004464 ORTHO05D005135 1.7e-38 162.2 81 98.8
ClCG07G016070 Citrullus lanatus HOM05D004464 ORTHO05D005135 6.6e-38 160.2 81 97.5
Sed0009719 Sechium edule HOM05D004464 ORTHO05D005135 1.6e-36 155.6 81 93.8
PGR042G1328 Punica granatum HOM05D004464 ORTHO05D005135 3.2e-32 141.4 81 82.7
Lju361A7T16 Lonicera japonica HOM05D004464 ORTHO05D005135 1.6e-31 139.0 82 81.7
HanXRQChr15g0490131 Helianthus annuus HOM05D004464 ORTHO05D005135 2.1e-31 138.7 81 81.5
GSVIVG01036537001 Vitis vinifera HOM05D004464 ORTHO05D005135 2.1e-31 138.7 81 81.5
Dinv33871 Davidia involucrata HOM05D004464 ORTHO05D005135 2.7e-31 138.3 81 80.2
Actinidia26272 Actinidia chinensis HOM05D004464 ORTHO05D005135 3.5e-31 137.9 81 81.5
Atru.chr5.3325 Acer truncatum HOM05D004464 ORTHO05D005135 4.6e-31 137.5 81 81.5
Atru.chr12.814 Acer truncatum HOM05D004464 ORTHO05D005135 7.8e-31 136.7 81 80.2
Duzib150G0689 Durio zibethinus HOM05D004464 ORTHO05D005135 7.8e-31 136.7 81 81.5
TAR371G0146 Trochodendron aralioides HOM05D004464 ORTHO05D005135 7.8e-31 136.7 81 80.2
Oeu033412.2 Olea europaea HOM05D004464 ORTHO05D005135 1.0e-30 136.3 81 80.2
Prupe.3G248300 Prunus persica HOM05D004464 ORTHO05D005135 1.0e-30 136.3 81 80.2
Dinv34904 Davidia involucrata HOM05D004464 ORTHO05D005135 1.3e-30 136.0 81 80.2
Eucgr.J01412 Eucalyptus grandis HOM05D004464 ORTHO05D005135 1.3e-30 136.0 81 80.2
Actinidia17608 Actinidia chinensis HOM05D004464 ORTHO05D005135 1.7e-30 135.6 81 80.2
Thecc.01G298100 Theobroma cacao HOM05D004464 ORTHO05D005135 1.7e-30 135.6 81 80.2
Gohir.D05G003500 Gossypium hirsutum HOM05D004464 ORTHO05D005135 2.3e-30 135.2 81 79.0
Gorai.009G003100 Gossypium raimondii HOM05D004464 ORTHO05D005135 2.3e-30 135.2 81 79.0
CDE10G0456 Ceratophyllum demersum HOM05D004464 ORTHO05D005135 3.0e-30 134.8 81 79.0
CDE10G0562 Ceratophyllum demersum HOM05D004464 ORTHO05D005135 3.9e-30 134.4 81 79.0
Nn4g23543 Nelumbo nucifera HOM05D004464 ORTHO05D005135 3.9e-30 134.4 81 80.2
Hund16239 Selenicereus undatus HOM05D004464 ORTHO05D005135 3.9e-30 134.4 81 77.8
Ciclev10012892m.g Citrus clementina HOM05D004464 ORTHO05D005135 5.1e-30 134.0 81 79.0
TWI36G0525 Tripterygium wilfordii HOM05D004464 ORTHO05D005135 5.1e-30 134.0 81 77.8
TWI36G0787 Tripterygium wilfordii HOM05D004464 ORTHO05D005135 5.1e-30 134.0 81 77.8
Duzib170G0747 Durio zibethinus HOM05D004464 ORTHO05D005135 6.6e-30 133.7 81 79.0
Gohir.A05G003100 Gossypium hirsutum HOM05D004464 ORTHO05D005135 6.6e-30 133.7 81 77.8
TWI75G1858 Tripterygium wilfordii HOM05D004464 ORTHO05D005135 6.6e-30 133.7 81 77.8
MSTRG.15432 Avicennia marina HOM05D004464 ORTHO05D005135 1.1e-29 132.9 81 79.0
Phvul.007G072900 Phaseolus vulgaris HOM05D004464 ORTHO05D005135 1.1e-29 132.9 81 79.0
Glyma.10G232700 Glycine max HOM05D004464 ORTHO05D005135 1.5e-29 132.5 81 77.8
Glyma.20G161600 Glycine max HOM05D004464 ORTHO05D005135 1.5e-29 132.5 81 77.8
Lj3g0020854 Lotus japonicus HOM05D004464 ORTHO05D005135 1.5e-29 132.5 81 80.2
Lj4g0017621 Lotus japonicus HOM05D004464 ORTHO05D005135 1.5e-29 132.5 81 80.2
Sopen02g034060 Solanum pennellii HOM05D004464 ORTHO05D005135 1.9e-29 132.1 81 77.8
PGSC0003DMG400001469 Solanum tuberosum HOM05D004464 ORTHO05D005135 1.9e-29 132.1 81 77.8
TPR.G29907 Trifolium pratense HOM05D004464 ORTHO05D005135 1.9e-29 132.1 81 79.0
FvH4_6g46310 Fragaria vesca HOM05D004464 ORTHO05D005135 2.5e-29 131.7 81 77.8
FAN02G0274 Fragaria x ananassa HOM05D004464 ORTHO05D005135 2.5e-29 131.7 81 77.8
FAN05G3637 Fragaria x ananassa HOM05D004464 ORTHO05D005135 2.5e-29 131.7 81 77.8
FAN09G0031 Fragaria x ananassa HOM05D004464 ORTHO05D005135 2.5e-29 131.7 81 77.8
FAN14G2017 Fragaria x ananassa HOM05D004464 ORTHO05D005135 2.5e-29 131.7 81 77.8
Medtr8g102530 Medicago truncatula HOM05D004464 ORTHO05D005135 4.3e-29 131.0 81 76.5
SalBow1G0807 Salvia bowleyana HOM05D004464 ORTHO05D005135 4.3e-29 131.0 81 76.5
TPR.G23462 Trifolium pratense HOM05D004464 ORTHO05D005135 4.3e-29 131.0 81 79.0
arahy.Tifrunner.gnm1.ann1.6V5APJ Arachis hypogaea HOM05D004464 ORTHO05D005135 5.6e-29 130.6 81 76.5
arahy.Tifrunner.gnm1.ann1.AQQ1ZC Arachis hypogaea HOM05D004464 ORTHO05D005135 5.6e-29 130.6 81 76.5
Hma1.2p1_1837F.1_g304810 Hydrangea macrophylla HOM05D004464 ORTHO05D005135 5.6e-29 130.6 81 76.5
Solyc02g089280.3 Solanum lycopersicum HOM05D004464 ORTHO05D005135 5.6e-29 130.6 81 76.5
COL.COLO4_21291 Corchorus olitorius HOM05D004464 ORTHO05D005135 7.3e-29 130.2 81 77.8
Manes.01G100100 Manihot esculenta HOM05D004464 ORTHO05D005135 7.3e-29 130.2 81 77.8
Nn3g17540 Nelumbo nucifera HOM05D004464 ORTHO05D005135 9.6e-29 129.8 81 79.0
EL10Ac2g04433 Beta vulgaris HOM05D004464 ORTHO05D005135 1.3e-28 129.4 81 75.3
SGA_v2.0_scaffold148G36455 Striga asiatica HOM05D004464 ORTHO05D005135 1.3e-28 129.4 81 76.5
RcHm_v2.0_Chr2g0164761 Rosa chinensis HOM05D004464 ORTHO05D005135 1.6e-28 129.0 81 76.5
Migut.K00882 Erythranthe guttata HOM05D004464 ORTHO05D005135 2.1e-28 128.6 81 76.5
MD09G1075700 Malus domestica HOM05D004464 ORTHO05D005135 3.6e-28 127.9 81 74.1
Peaxi162Scf01039g00131 Petunia axillaris HOM05D004464 ORTHO05D005135 3.6e-28 127.9 81 76.5
Ah.10g038200 Amaranthus hybridus HOM05D004464 ORTHO05D005135 6.2e-28 127.1 81 75.3
MD17G1066400 Malus domestica HOM05D004464 ORTHO05D005135 6.2e-28 127.1 81 74.1
AUR62023152 Chenopodium quinoa HOM05D004464 ORTHO05D005135 8.1e-28 126.7 81 76.5
QL09p044371 Quercus lobata HOM05D004464 ORTHO05D005135 8.1e-28 126.7 81 76.5
Ah.16g101000 Amaranthus hybridus HOM05D004464 ORTHO05D005135 1.1e-27 126.3 81 74.1
CANSAT64G2552 Cannabis sativa HOM05D004464 ORTHO05D005135 1.1e-27 126.3 81 74.1
Nitab4.5_0001339g0030 Nicotiana tabacum HOM05D004464 ORTHO05D005135 1.1e-27 126.3 81 74.1
Sc07g0002150 Simmondsia chinensis HOM05D004464 ORTHO05D005135 1.4e-27 125.9 81 74.1
SGA_v2.0_scaffold163G37992 Striga asiatica HOM05D004464 ORTHO05D005135 1.4e-27 125.9 81 74.1
Cc07_g04530 Coffea canephora HOM05D004464 ORTHO05D005135 1.8e-27 125.6 81 75.3
MBI15_g04989_MAGBIO Magnolia biondii HOM05D004464 ORTHO05D005135 1.8e-27 125.6 81 72.8
MBI15_g11301_MAGBIO Magnolia biondii HOM05D004464 ORTHO05D005135 1.8e-27 125.6 81 72.8
THA.LOC104820981 Tarenaya hassleriana HOM05D004464 ORTHO05D005135 1.8e-27 125.6 81 74.1
VMungo0720G0545 Vigna mungo HOM05D004464 ORTHO05D005135 1.8e-27 125.6 81 77.8
CANSAT11G0238 Cannabis sativa HOM05D004464 ORTHO05D005135 2.4e-27 125.2 81 72.8
CiPaw.06G059900 Carya illinoinensis HOM05D004464 ORTHO05D005135 2.4e-27 125.2 81 75.3
AUR62009474 Chenopodium quinoa HOM05D004464 ORTHO05D005135 2.4e-27 125.2 81 75.3
CSS0016516 Camellia sinensis var. sinensis HOM05D004464 ORTHO05D005135 3.1e-27 124.8 81 71.6
CSS0037173 Camellia sinensis var. sinensis HOM05D004464 ORTHO05D005135 3.1e-27 124.8 81 71.6
CiPaw.15G080600 Carya illinoinensis HOM05D004464 ORTHO05D005135 3.1e-27 124.8 81 74.1
Lalb_Chr16g0389591 Lupinus albus HOM05D004464 ORTHO05D005135 5.3e-27 124.0 81 74.1
Sabra10G0012000 Salix brachista HOM05D004464 ORTHO05D005135 5.3e-27 124.0 81 74.1
Sabra17G0087000 Salix brachista HOM05D004464 ORTHO05D005135 5.3e-27 124.0 81 74.1
Potri.017G101200 Populus trichocarpa HOM05D004464 ORTHO05D005135 6.9e-27 123.6 81 74.1
CAN.G497.54 Capsicum annuum HOM05D004464 ORTHO05D005135 9.0e-27 123.2 81 71.6
DCAR_016093 Daucus carota HOM05D004464 ORTHO05D005135 9.0e-27 123.2 81 71.6
Sp6g28370 Schrenkiella parvula HOM05D004464 ORTHO05D005135 1.2e-26 122.9 81 71.6
Aa31LG2G910 Aethionema arabicum HOM05D004464 ORTHO05D005135 2.0e-26 122.1 81 71.6
unitig_0.g1789 Utricularia gibba HOM05D004464 ORTHO05D005135 2.0e-26 122.1 81 74.1
Aa31LG11G13830 Aethionema arabicum HOM05D004464 ORTHO05D005135 2.6e-26 121.7 81 71.6
Potri.004G113600 Populus trichocarpa HOM05D004464 ORTHO05D005135 2.6e-26 121.7 81 72.8
BcaNung02202 Brassica carinata HOM05D004464 ORTHO05D005135 7.6e-26 120.2 81 69.1
vmacro18124 Vaccinium macrocarpon HOM05D004464 ORTHO05D005135 9.9e-26 119.8 80 72.5
Psat7g017000 Pisum sativum HOM05D004464 ORTHO05D005135 1.3e-25 119.4 81 74.1
ATR0743G033 Amborella trichopoda HOM05D004464 ORTHO05D005135 2.2e-25 118.6 81 69.1
Pp3c13_7750 Physcomitrium patens HOM05D004464 ORTHO05D005135 2.2e-25 118.6 81 71.6
QL02p065152 Quercus lobata HOM05D004464 ORTHO05D005135 2.2e-25 118.6 81 72.8
BcaB01g05028 Brassica carinata HOM05D004464 ORTHO05D005135 2.9e-25 118.2 81 67.9
DCAR_010215 Daucus carota HOM05D004464 ORTHO05D005135 2.9e-25 118.2 78 70.5
BcaC03g18447 Brassica carinata HOM05D004464 ORTHO05D005135 3.8e-25 117.9 81 70.4
A02p03200 Brassica napus HOM05D004464 ORTHO05D005135 3.8e-25 117.9 81 70.4
C02p07950 Brassica napus HOM05D004464 ORTHO05D005135 3.8e-25 117.9 81 70.4
BolC2t06718H Brassica oleracea HOM05D004464 ORTHO05D005135 3.8e-25 117.9 81 70.4
BraA02t05291Z Brassica rapa HOM05D004464 ORTHO05D005135 3.8e-25 117.9 81 70.4
Aqoxy3G02935 Aquilegia oxysepala HOM05D004464 ORTHO05D005135 4.9e-25 117.5 81 71.6
AT5G15750 Arabidopsis thaliana HOM05D004464 ORTHO05D005135 4.9e-25 117.5 81 66.7
A03p07340 Brassica napus HOM05D004464 ORTHO05D005135 6.4e-25 117.1 81 67.9
BraA03t10058Z Brassica rapa HOM05D004464 ORTHO05D005135 6.4e-25 117.1 81 67.9
ECA285G0012 Erigeron canadensis HOM05D004464 ORTHO05D005135 6.4e-25 117.1 81 70.4
C03p08530 Brassica napus HOM05D004464 ORTHO05D005135 1.1e-24 116.3 81 66.7
BolC3t13358H Brassica oleracea HOM05D004464 ORTHO05D005135 1.1e-24 116.3 81 66.7
Cfa007699 Carpinus fangiana HOM05D004464 ORTHO05D005135 1.1e-24 116.3 81 72.8
AL6G26590 Arabidopsis lyrata HOM05D004464 ORTHO05D005135 5.4e-24 114.0 81 65.4
PSO017G3712 Papaver somniferum HOM05D004464 ORTHO05D005135 5.4e-24 114.0 81 67.9
PSO478G4867 Papaver somniferum HOM05D004464 ORTHO05D005135 5.4e-24 114.0 81 67.9
SMO089G0012 Selaginella moellendorffii HOM05D004464 ORTHO05D005135 5.4e-24 114.0 81 66.7
Carub.0004s0609 Capsella rubella HOM05D004464 ORTHO05D005135 9.3e-24 113.2 81 65.4
CARHR197580 Cardamine hirsuta HOM05D004464 ORTHO05D005135 9.3e-24 113.2 81 64.2
Haze_14377 Corylus avellana HOM05D004464 ORTHO05D005135 9.3e-24 113.2 88 68.2
Ca_17363_v3 Cicer arietinum L. HOM05D002451 ORTHO05D007901 1.2e-23 112.8 68 76.5
AagrBONN_evm.TU.Sc2ySwM_344.90 Anthoceros agrestis HOM05D004464 ORTHO05D005135 3.5e-23 111.3 81 69.1
Mapoly0007s0196 Marchantia polymorpha HOM05D004464 ORTHO05D005135 3.5e-23 111.3 81 64.2
Carub.0006s1390 Capsella rubella HOM05D004464 ORTHO05D005135 7.9e-23 110.2 81 65.4
BcaNung00660 Brassica carinata HOM05D004464 ORTHO05D005135 1.0e-22 109.8 81 61.7
BolC1t00394H Brassica oleracea HOM05D004464 ORTHO05D005135 1.0e-22 109.8 81 61.7
SHI12226 Sapria himalayana HOM05D004464 ORTHO05D005135 1.3e-22 109.4 82 65.9
Zm00001eb280020 Zea mays HOM05D004464 ORTHO05D005135 1.3e-22 109.4 81 64.2
TAR629G1609 Trochodendron aralioides HOM05D004464 ORTHO05D005135 3.0e-22 108.2 66 75.8
PSO782G4050 Papaver somniferum HOM05D004464 ORTHO05D005135 1.5e-21 105.9 81 63.0
PSO198G0095 Papaver somniferum HOM05D004464 ORTHO05D005135 2.5e-21 105.1 81 63.0
MCO12G368 Micromonas commoda HOM05D004464 ORTHO05D005135 7.4e-21 103.6 81 63.0
CBR_g26031 Chara braunii HOM05D004464 ORTHO05D005135 1.6e-20 102.4 81 60.5
Cre03.g170750 Chlamydomonas reinhardtii HOM05D004464 ORTHO05D005135 1.1e-19 99.8 81 63.0
Lsat_1_v5_gn_3_96881 Lactuca sativa HOM05D004464 ORTHO05D005135 6.9e-19 97.1 78 62.8
Gorai.007G357000 Gossypium raimondii HOM05D004464 ORTHO05D005135 3.8e-17 91.3 50 82.0
HPP92_025702 Vanilla planifolia HOM05D004464 ORTHO05D005135 3.2e-16 88.2 81 58.0
Thecc.01G298200 Theobroma cacao HOM05D004464 ORTHO05D005135 1.6e-15 85.9 47 83.0
BcaNung00661 Brassica carinata HOM05D004464 ORTHO05D005135 2.7e-15 85.1 81 51.9
SHI12394 Sapria himalayana HOM05D004464 ORTHO05D005135 3.5e-15 84.7 82 56.1
Glyma.16G058000 Glycine max HOM05D004464 ORTHO05D005135 3.3e-13 78.2 50 72.0
Nitab4.5_0009887g0020 Nicotiana tabacum HOM05D004464 ORTHO05D005135 1.3e-12 76.3 50 68.0
SMO302G0020 Selaginella moellendorffii HOM05D004464 ORTHO05D005135 1.4e-11 72.8 79 53.2
Cfa025099 Carpinus fangiana HOM05D002539 ORTHO05D005135 4.0e-11 71.2 81 43.2
AagrBONN_evm.TU.Sc2ySwM_362.1773 Anthoceros agrestis HOM05D004464 ORTHO05D005135 2.0e-10 68.9 50 64.0


User provided reference genes

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