Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C000039.2 Cucumis melo HOM05D003829 ORTHO05D004943 2.7e-38 161.4 75 100.0
CsaV3_1G003150 Cucumis sativus L. HOM05D003829 ORTHO05D004943 2.3e-37 158.3 75 97.3
ClCG06G015260 Citrullus lanatus HOM05D003829 ORTHO05D004943 1.8e-34 148.7 75 89.3
Sed0025371 Sechium edule HOM05D003829 ORTHO05D004943 9.1e-34 146.4 75 86.7
HanXRQChr03g0078721 Helianthus annuus HOM05D003829 ORTHO05D004943 7.9e-30 133.3 75 80.0
Sc12g0007010 Simmondsia chinensis HOM05D003829 ORTHO05D004943 1.0e-29 132.9 75 80.0
Cc00_g04570 Coffea canephora HOM05D003829 ORTHO05D004943 2.3e-29 131.7 75 80.0
TAR622G1091 Trochodendron aralioides HOM05D003829 ORTHO05D004943 2.3e-29 131.7 75 78.7
EL10Ac6g14132 Beta vulgaris HOM05D003829 ORTHO05D004943 5.1e-29 130.6 75 78.7
PGR119G2172 Punica granatum HOM05D003829 ORTHO05D004943 8.8e-29 129.8 75 77.3
GSVIVG01008188001 Vitis vinifera HOM05D003829 ORTHO05D004943 8.8e-29 129.8 75 76.0
HanXRQChr09g0270121 Helianthus annuus HOM05D003829 ORTHO05D004943 2.6e-28 128.3 75 77.3
Atru.chr10.875 Acer truncatum HOM05D003829 ORTHO05D004943 3.3e-28 127.9 75 77.3
Manes.06G055300 Manihot esculenta HOM05D003829 ORTHO05D004943 5.7e-28 127.1 75 73.3
Hund27361 Selenicereus undatus HOM05D003829 ORTHO05D004943 5.7e-28 127.1 74 79.7
Nn3g17616 Nelumbo nucifera HOM05D003829 ORTHO05D004943 1.3e-27 125.9 74 74.3
Thecc.03G060100 Theobroma cacao HOM05D003829 ORTHO05D004943 1.7e-27 125.6 75 76.0
COL.COLO4_28877 Corchorus olitorius HOM05D003829 ORTHO05D004943 2.8e-27 124.8 73 74.0
Glyma.05G016400 Glycine max HOM05D003829 ORTHO05D004943 2.8e-27 124.8 75 77.3
Glyma.17G083700 Glycine max HOM05D003829 ORTHO05D004943 2.8e-27 124.8 75 77.3
Oeu029991.1 Olea europaea HOM05D003829 ORTHO05D004943 2.8e-27 124.8 75 74.7
SGA_v2.0_scaffold116G32207 Striga asiatica HOM05D003829 ORTHO05D004943 6.3e-27 123.6 75 73.3
Prupe.5G212200 Prunus persica HOM05D003829 ORTHO05D004943 8.2e-27 123.2 75 74.7
ATR0789G018 Amborella trichopoda HOM05D003829 ORTHO05D004943 1.1e-26 122.9 75 74.7
arahy.Tifrunner.gnm1.ann1.03AHKF Arachis hypogaea HOM05D003829 ORTHO05D004943 1.4e-26 122.5 75 76.0
arahy.Tifrunner.gnm1.ann1.WM1R7K Arachis hypogaea HOM05D003829 ORTHO05D004943 1.4e-26 122.5 75 76.0
Ciclev10014690m.g Citrus clementina HOM05D003829 ORTHO05D004943 1.4e-26 122.5 75 72.0
Actinidia35063 Actinidia chinensis HOM05D003829 ORTHO05D004943 1.8e-26 122.1 75 73.3
MSTRG.22458 Avicennia marina HOM05D003829 ORTHO05D004943 1.8e-26 122.1 75 73.3
AUR62008644 Chenopodium quinoa HOM05D003829 ORTHO05D004943 1.8e-26 122.1 75 72.0
Hma1.2p1_0340F.1_g130210 Hydrangea macrophylla HOM05D003829 ORTHO05D004943 1.8e-26 122.1 75 74.7
Hma1.2p1_0744F.1_g211650 Hydrangea macrophylla HOM05D003829 ORTHO05D004943 1.8e-26 122.1 75 74.7
SalBow6G2606 Salvia bowleyana HOM05D003829 ORTHO05D004943 1.8e-26 122.1 75 72.0
AUR62014243 Chenopodium quinoa HOM05D003829 ORTHO05D004943 2.4e-26 121.7 75 72.0
MD06G1208000 Malus domestica HOM05D003829 ORTHO05D004943 2.4e-26 121.7 75 73.3
Medtr5g077610 Medicago truncatula HOM05D003829 ORTHO05D004943 2.4e-26 121.7 75 74.7
Psat4g043920 Pisum sativum HOM05D003829 ORTHO05D004943 2.4e-26 121.7 75 74.7
Actinidia18960 Actinidia chinensis HOM05D003829 ORTHO05D004943 3.1e-26 121.3 75 72.0
Lalb_Chr12g0197451 Lupinus albus HOM05D003829 ORTHO05D004943 3.1e-26 121.3 75 76.0
SGA_v2.0_scaffold127G34045 Striga asiatica HOM05D003829 ORTHO05D004943 3.1e-26 121.3 75 74.7
Ah.03g138770 Amaranthus hybridus HOM05D003829 ORTHO05D004943 4.1e-26 120.9 75 70.7
Migut.L00155 Erythranthe guttata HOM05D003829 ORTHO05D004943 4.1e-26 120.9 75 73.3
Migut.M00517 Erythranthe guttata HOM05D003829 ORTHO05D004943 4.1e-26 120.9 75 73.3
Migut.N03353 Erythranthe guttata HOM05D003829 ORTHO05D004943 4.1e-26 120.9 75 73.3
Migut.O00831 Erythranthe guttata HOM05D003829 ORTHO05D004943 4.1e-26 120.9 75 73.3
Cpa.g.sc271.5 Carica papaya HOM05D003829 ORTHO05D004943 5.3e-26 120.6 75 70.7
Lj4g0017423 Lotus japonicus HOM05D003829 ORTHO05D004943 5.3e-26 120.6 75 73.3
Prupe.5G041000 Prunus persica HOM05D003829 ORTHO05D004943 5.3e-26 120.6 75 73.3
ECA240G3266 Erigeron canadensis HOM05D003829 ORTHO05D003544 7.0e-26 120.2 75 76.0
Eucgr.B02012 Eucalyptus grandis HOM05D003829 ORTHO05D004943 7.0e-26 120.2 74 70.3
Medtr4g112680 Medicago truncatula HOM05D003829 ORTHO05D004943 9.1e-26 119.8 75 73.3
Gohir.A12G270300 Gossypium hirsutum HOM05D003829 ORTHO05D004943 1.2e-25 119.4 75 70.7
Gohir.D12G270700 Gossypium hirsutum HOM05D003829 ORTHO05D004943 1.2e-25 119.4 75 70.7
Gorai.008G291100 Gossypium raimondii HOM05D003829 ORTHO05D004943 1.2e-25 119.4 75 70.7
CANSAT80G2907 Cannabis sativa HOM05D003829 ORTHO05D004943 2.0e-25 118.6 75 72.0
TWI73G0611 Tripterygium wilfordii HOM05D003829 ORTHO05D004943 2.0e-25 118.6 75 73.3
Phvul.003G180700 Phaseolus vulgaris HOM05D003829 ORTHO05D004943 3.5e-25 117.9 75 73.3
VMungo1215G2863 Vigna mungo HOM05D003829 ORTHO05D004943 3.5e-25 117.9 75 73.3
Rhsim01G0138800 Rhododendron simsii HOM05D003829 ORTHO05D004943 5.9e-25 117.1 74 68.9
CSS0022273 Camellia sinensis var. sinensis HOM05D003829 ORTHO05D004943 7.7e-25 116.7 75 70.7
Potri.013G068100 Populus trichocarpa HOM05D003829 ORTHO05D004943 7.7e-25 116.7 75 70.7
Rhsim09G0091000 Rhododendron simsii HOM05D003829 ORTHO05D004943 7.7e-25 116.7 74 68.9
SEGI_39885 Sequoiadendron giganteum HOM05D003829 ORTHO05D004943 1.0e-24 116.3 75 70.7
Nn6g34733 Nelumbo nucifera HOM05D003829 ORTHO05D004943 1.3e-24 115.9 72 72.2
RcHm_v2.0_Chr7g0184111 Rosa chinensis HOM05D003829 ORTHO05D004943 1.3e-24 115.9 75 68.0
MD14G1218400 Malus domestica HOM05D003829 ORTHO05D004943 1.7e-24 115.5 75 69.3
Sabra13G0059400 Salix brachista HOM05D003829 ORTHO05D004943 2.2e-24 115.2 75 69.3
THA.LOC104806554 Tarenaya hassleriana HOM05D003829 ORTHO05D004943 2.2e-24 115.2 74 68.9
vmacro21052 Vaccinium macrocarpon HOM05D003829 ORTHO05D004943 2.2e-24 115.2 75 68.0
THA.LOC104820955 Tarenaya hassleriana HOM05D003829 ORTHO05D004943 3.8e-24 114.4 74 67.6
DCAR_011621 Daucus carota HOM05D003829 ORTHO05D004943 6.5e-24 113.6 75 69.3
Potri.018G070200 Populus trichocarpa HOM05D003829 ORTHO05D004943 1.1e-23 112.8 75 66.7
SEGI_27435 Sequoiadendron giganteum HOM05D003829 ORTHO05D004943 1.1e-23 112.8 75 69.3
Sp6g28120 Schrenkiella parvula HOM05D003829 ORTHO05D004943 1.4e-23 112.5 75 68.0
AL2G32240 Arabidopsis lyrata HOM05D003829 ORTHO05D004943 1.9e-23 112.1 75 64.0
FvH4_5g13020 Fragaria vesca HOM05D003829 ORTHO05D004943 3.2e-23 111.3 75 68.0
FAN18G1085 Fragaria x ananassa HOM05D003829 ORTHO05D004943 3.2e-23 111.3 75 68.0
FAN08G2534 Fragaria x ananassa HOM05D003829 ORTHO05D004943 4.2e-23 110.9 75 66.7
Carub.0002s1941 Capsella rubella HOM05D003829 ORTHO05D004943 9.4e-23 109.8 75 64.0
FAN13G0156 Fragaria x ananassa HOM05D003829 ORTHO05D004943 9.4e-23 109.8 75 68.0
BraA03t10079Z Brassica rapa HOM05D000168 ORTHO05D000811 1.2e-22 109.4 75 65.3
unitig_0.g846 Utricularia gibba HOM05D003829 ORTHO05D004943 1.2e-22 109.4 74 67.6
C02p08100 Brassica napus HOM05D003829 ORTHO05D004943 1.6e-22 109.0 74 66.2
A03p07510 Brassica napus HOM05D003829 ORTHO05D004943 4.7e-22 107.5 75 65.3
CAN.G282.43 Capsicum annuum HOM05D003829 ORTHO05D004943 4.7e-22 107.5 75 62.7
Sopen01g003830 Solanum pennellii HOM05D003829 ORTHO05D004943 8.0e-22 106.7 75 62.7
Mapoly0013s0023 Marchantia polymorpha HOM05D003829 ORTHO05D004943 1.4e-21 105.9 75 64.0
CARHR065490 Cardamine hirsuta HOM05D003829 ORTHO05D004943 6.7e-21 103.6 86 58.1
BcaC04g18917 Brassica carinata HOM05D003829 ORTHO05D004943 1.1e-20 102.8 75 64.0
A10p23060 Brassica napus HOM05D003829 ORTHO05D004943 1.1e-20 102.8 75 64.0
C09p61050 Brassica napus HOM05D003829 ORTHO05D004943 1.1e-20 102.8 75 64.0
BolC9t58950H Brassica oleracea HOM05D003829 ORTHO05D004943 1.1e-20 102.8 75 64.0
BraA10t44375Z Brassica rapa HOM05D003829 ORTHO05D004943 1.1e-20 102.8 75 64.0
AT1G72550 Arabidopsis thaliana HOM05D003829 ORTHO05D004943 7.4e-20 100.1 82 57.3
CDE10G0520 Ceratophyllum demersum HOM05D003829 ORTHO05D004943 9.7e-20 99.8 75 60.0
unitig_60.g25860 Utricularia gibba HOM05D003829 ORTHO05D004943 2.2e-19 98.6 88 56.8
TPR.G23867 Trifolium pratense HOM05D003829 ORTHO05D004943 3.7e-19 97.8 75 64.0
C03p08720 Brassica napus HOM05D003829 ORTHO05D004943 6.3e-19 97.1 75 61.3
BolC3t13370H Brassica oleracea HOM05D000168 ORTHO05D000811 6.3e-19 97.1 75 61.3
Aa31LG11G13610 Aethionema arabicum HOM05D003829 ORTHO05D004943 1.4e-18 95.9 101 48.5
Dinv38617 Davidia involucrata HOM05D003829 ORTHO05D004943 1.4e-18 95.9 54 75.9
BcaB08g36877 Brassica carinata HOM05D003829 ORTHO05D004943 3.1e-18 94.7 79 58.2
CiPaw.04G139300 Carya illinoinensis HOM05D003829 ORTHO05D004943 3.1e-18 94.7 75 61.3
Lj4C813G7 Lonicera japonica HOM05D003829 ORTHO05D004943 4.1e-18 94.4 53 77.4
QL10p021913 Quercus lobata HOM05D003829 ORTHO05D004943 2.0e-17 92.0 74 59.5
CiPaw.15G121900 Carya illinoinensis HOM05D003829 ORTHO05D004943 2.6e-17 91.7 75 57.3
COL.COLO4_30269 Corchorus olitorius HOM05D003829 ORTHO05D004943 3.5e-17 91.3 52 76.9
CDE10G0816 Ceratophyllum demersum HOM05D003829 ORTHO05D004943 5.9e-17 90.5 64 60.9
BcaC03g18463 Brassica carinata HOM05D003829 ORTHO05D004943 5.0e-16 87.4 76 56.6
BolC2t06732H Brassica oleracea HOM05D003829 ORTHO05D004943 5.0e-16 87.4 76 56.6
Thhalv10007156m.g Eutrema salsugineum HOM05D003829 ORTHO05D004943 1.1e-15 86.3 75 50.7
SMO351G0192 Selaginella moellendorffii HOM05D003829 ORTHO05D004943 1.9e-15 85.5 59 61.0
CBR_g49053 Chara braunii HOM05D003829 ORTHO05D004943 7.2e-15 83.6 59 57.6
Ca_21737_v3 Cicer arietinum L. HOM05D003829 ORTHO05D004943 9.4e-15 83.2 54 70.4
Duzib205G0197 Durio zibethinus HOM05D003829 ORTHO05D004943 1.2e-14 82.8 54 66.7
Pp3c22_15340 Physcomitrium patens HOM05D003829 ORTHO05D004943 1.2e-14 82.8 60 60.0
PSO339G3234 Papaver somniferum HOM05D003829 ORTHO05D004943 2.1e-14 82.0 83 50.6
HPP92_013143 Vanilla planifolia HOM05D003829 ORTHO05D004943 2.1e-14 82.0 75 50.7
HPP92_013183 Vanilla planifolia HOM05D003829 ORTHO05D004943 2.1e-14 82.0 75 50.7
Pp3c19_13120 Physcomitrium patens HOM05D003829 ORTHO05D004943 8.0e-14 80.1 58 60.3
HPP92_013145 Vanilla planifolia HOM05D003829 ORTHO05D004943 1.0e-13 79.7 57 57.9
Atru.chr11.247 Acer truncatum HOM05D003829 ORTHO05D004943 2.3e-13 78.6 51 70.6
PSO676G0009 Papaver somniferum HOM05D003829 ORTHO05D004943 1.2e-12 76.3 82 45.1
PSO384G2719 Papaver somniferum HOM05D003829 ORTHO05D004943 1.5e-12 75.9 80 46.2
Solyc01g008310.4 Solanum lycopersicum HOM05D003829 ORTHO05D004943 2.0e-12 75.5 52 63.5
Aqoxy6G02137 Aquilegia oxysepala HOM05D003829 ORTHO05D004943 5.7e-12 73.9 76 50.0
Aqoxy1G02793 Aquilegia oxysepala HOM05D003829 ORTHO05D004943 2.8e-11 71.6 76 48.7
Zm00001eb267900 Zea mays HOM05D003829 ORTHO05D004943 4.8e-11 70.9 76 47.4
Haze_18554 Corylus avellana HOM05D003829 ORTHO05D004943 1.8e-10 68.9 52 63.5
PRCOL_00001438 Prasinoderma coloniale HOM05D003829 ORTHO05D004943 1.8e-10 68.9 72 43.1
Cfa021591 Carpinus fangiana HOM05D003829 ORTHO05D004943 3.1e-10 68.2 54 61.1
Os05g0558900 Oryza sativa ssp. japonica HOM05D003829 ORTHO05D004943 3.1e-10 68.2 76 46.1
Haze_26625 Corylus avellana HOM05D003829 ORTHO05D004943 2.0e-09 65.5 74 39.2
MCO09G827 Micromonas commoda HOM05D003829 ORTHO05D004943 4.5e-09 64.3 72 44.4
Haze_25315 Corylus avellana HOM05D003829 ORTHO05D004943 5.9e-09 63.9 52 57.7
TAR374G1547 Trochodendron aralioides HOM05D003829 ORTHO05D004943 1.0e-08 63.2 32 84.4
Cre13.g603900 Chlamydomonas reinhardtii HOM05D003829 ORTHO05D004943 4.2e-07 57.8 84 38.1
Peaxi162Scf00153g00217 Petunia axillaris HOM05D003829 ORTHO05D004943 5.5e-07 57.4 75 42.7


User provided reference genes

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