Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD15G1369800 Malus domestica HOM05D005338 ORTHO05D006550 1.9e-111 406.0 221 100.0
Prupe.1G518900 Prunus persica HOM05D005338 ORTHO05D006550 3.8e-96 355.1 220 87.3
Prupe.1G517500 Prunus persica HOM05D005338 ORTHO05D006550 2.5e-95 352.4 220 86.4
Cpa.g.sc337.5 Carica papaya HOM05D005338 ORTHO05D006550 5.5e-95 351.3 221 83.3
Gohir.A11G203500 Gossypium hirsutum HOM05D005338 ORTHO05D006550 2.1e-94 349.4 221 83.7
Duzib147G0908 Durio zibethinus HOM05D005338 ORTHO05D006550 2.7e-94 349.0 221 83.3
Actinidia15288 Actinidia chinensis HOM05D005338 ORTHO05D006550 3.5e-94 348.6 221 82.8
QL02p007082 Quercus lobata HOM05D005338 ORTHO05D006550 4.6e-94 348.2 220 82.7
Gorai.007G236400 Gossypium raimondii HOM05D005338 ORTHO05D006550 2.3e-93 345.9 205 85.9
Hma1.2p1_0471F.1_g159310 Hydrangea macrophylla HOM05D005338 ORTHO05D006550 2.3e-93 345.9 221 82.4
Gorai.003G040400 Gossypium raimondii HOM05D005338 ORTHO05D006550 3.9e-93 345.1 221 81.9
Cfa002226 Carpinus fangiana HOM05D005338 ORTHO05D006550 5.1e-93 344.7 221 80.1
Gohir.D03G039200 Gossypium hirsutum HOM05D005338 ORTHO05D006550 8.7e-93 344.0 221 81.9
Gohir.A02G128500 Gossypium hirsutum HOM05D005338 ORTHO05D006550 1.5e-92 343.2 221 81.4
Nn8g40744 Nelumbo nucifera HOM05D005338 ORTHO05D006550 1.9e-92 342.8 221 80.1
Thecc.01G098200 Theobroma cacao HOM05D005338 ORTHO05D006550 1.9e-92 342.8 221 83.7
arahy.Tifrunner.gnm1.ann1.82M2ZV Arachis hypogaea HOM05D005338 ORTHO05D006550 2.5e-92 342.4 221 81.4
arahy.Tifrunner.gnm1.ann1.F09FAE Arachis hypogaea HOM05D005338 ORTHO05D006550 2.5e-92 342.4 221 81.4
arahy.Tifrunner.gnm1.ann1.N4382H Arachis hypogaea HOM05D005338 ORTHO05D006550 2.5e-92 342.4 221 81.4
arahy.Tifrunner.gnm1.ann1.VZ94AI Arachis hypogaea HOM05D005338 ORTHO05D006550 2.5e-92 342.4 221 81.4
CANSAT56G3114 Cannabis sativa HOM05D005338 ORTHO05D006550 2.5e-92 342.4 221 81.0
Oeu012884.1 Olea europaea HOM05D005338 ORTHO05D006550 2.5e-92 342.4 221 81.0
RcHm_v2.0_Chr5g0038311 Rosa chinensis HOM05D005338 ORTHO05D006550 2.5e-92 342.4 221 82.4
CiPaw.15G069200 Carya illinoinensis HOM05D005338 ORTHO05D006550 3.3e-92 342.0 221 79.6
GSVIVG01009622001 Vitis vinifera HOM05D005338 ORTHO05D006550 1.3e-91 340.1 219 79.0
Cc07_g04760 Coffea canephora HOM05D005338 ORTHO05D006550 1.6e-91 339.7 221 78.3
CSS0015965 Camellia sinensis var. sinensis HOM05D005338 ORTHO05D006550 3.7e-91 338.6 221 77.4
SalBow1G1006 Salvia bowleyana HOM05D000168 ORTHO05D006550 3.7e-91 338.6 221 81.4
Manes.13G095300 Manihot esculenta HOM05D005338 ORTHO05D006550 4.8e-91 338.2 223 80.7
Cfa018461 Carpinus fangiana HOM05D005338 ORTHO05D006550 6.3e-91 337.8 205 83.4
Glyma.15G160500 Glycine max HOM05D005338 ORTHO05D006550 6.3e-91 337.8 221 77.4
Nitab4.5_0003384g0030 Nicotiana tabacum HOM05D005338 ORTHO05D006550 6.3e-91 337.8 221 77.4
Eucgr.F01508 Eucalyptus grandis HOM05D005338 ORTHO05D006550 8.2e-91 337.4 221 79.6
Nitab4.5_0000154g0040 Nicotiana tabacum HOM05D005338 ORTHO05D006550 8.2e-91 337.4 220 77.3
COL.COLO4_27273 Corchorus olitorius HOM05D005338 ORTHO05D006550 1.8e-90 336.3 221 81.0
FAN08G1597 Fragaria x ananassa HOM05D005338 ORTHO05D006550 2.4e-90 335.9 220 79.5
MBI01_g22964_MAGBIO Magnolia biondii HOM05D005338 ORTHO05D006550 2.4e-90 335.9 221 76.9
EL10Ac3g06218 Beta vulgaris HOM05D005338 ORTHO05D006550 3.1e-90 335.5 221 81.0
FvH4_5g37300 Fragaria vesca HOM05D005338 ORTHO05D006550 3.1e-90 335.5 220 79.5
VMungo1215G3044 Vigna mungo HOM05D005338 ORTHO05D006550 3.1e-90 335.5 221 77.4
VMungo1309G1758 Vigna mungo HOM05D005338 ORTHO05D006550 4.1e-90 335.1 221 79.6
Migut.H00565 Erythranthe guttata HOM05D005338 ORTHO05D006550 6.9e-90 334.3 221 76.5
Medtr2g438770 Medicago truncatula HOM05D005338 ORTHO05D006550 6.9e-90 334.3 221 76.9
Phvul.009G240644 Phaseolus vulgaris HOM05D005338 ORTHO05D006550 6.9e-90 334.3 221 79.6
SGA_v2.0_scaffold4G02341 Striga asiatica HOM05D005338 ORTHO05D006550 6.9e-90 334.3 221 76.9
Glyma.09G054300 Glycine max HOM05D005338 ORTHO05D006550 9.0e-90 334.0 221 76.9
ClCG08G015430 Citrullus lanatus HOM05D005338 ORTHO05D006550 1.5e-89 333.2 221 76.5
CsaV3_2G028360 Cucumis sativus L. HOM05D005338 ORTHO05D006550 1.5e-89 333.2 221 76.5
FAN13G0739 Fragaria x ananassa HOM05D005338 ORTHO05D006550 1.5e-89 333.2 205 82.4
FAN04G2403 Fragaria x ananassa HOM05D005338 ORTHO05D006550 2.0e-89 332.8 217 78.8
FAN18G4080 Fragaria x ananassa HOM05D005338 ORTHO05D006550 2.0e-89 332.8 205 82.4
DCAR_003287 Daucus carota HOM05D005338 ORTHO05D006550 2.6e-89 332.4 221 78.7
PGR083G0298 Punica granatum HOM05D005338 ORTHO05D006550 2.6e-89 332.4 221 77.8
MSTRG.2958 Avicennia marina HOM05D005338 ORTHO05D006550 3.4e-89 332.0 221 77.4
Ciclev10026443m.g Citrus clementina HOM05D005338 ORTHO05D006550 3.4e-89 332.0 205 82.4
THA.LOC104824882 Tarenaya hassleriana HOM05D005338 ORTHO05D006550 3.4e-89 332.0 221 77.8
Sed0010775 Sechium edule HOM05D005338 ORTHO05D006550 5.9e-89 331.3 221 76.0
CANSAT25G1955 Cannabis sativa HOM05D005338 ORTHO05D006550 1.7e-88 329.7 221 76.0
CAN.G162.113 Capsicum annuum HOM05D005338 ORTHO05D006550 2.9e-88 328.9 218 75.7
Glyma.18G135700 Glycine max HOM05D005338 ORTHO05D006550 2.9e-88 328.9 221 76.9
Solyc06g008010.3 Solanum lycopersicum HOM05D005338 ORTHO05D006550 2.9e-88 328.9 218 76.6
PGSC0003DMG400014704 Solanum tuberosum HOM05D005338 ORTHO05D006550 2.9e-88 328.9 218 76.6
Lj4g0021487 Lotus japonicus HOM05D005338 ORTHO05D006550 5.0e-88 328.2 221 77.8
Lalb_Chr15g0083931 Lupinus albus HOM05D005338 ORTHO05D006550 5.0e-88 328.2 205 79.5
TWI74G1059 Tripterygium wilfordii HOM05D005338 ORTHO05D006550 5.0e-88 328.2 221 74.7
Gohir.D11G220100 Gossypium hirsutum HOM05D005338 ORTHO05D006550 6.5e-88 327.8 212 82.1
Sopen06g002850 Solanum pennellii HOM05D005338 ORTHO05D006550 6.5e-88 327.8 218 76.1
AT2G22370 Arabidopsis thaliana HOM05D005338 ORTHO05D006550 1.1e-87 327.0 221 75.6
Aqoxy6G01960 Aquilegia oxysepala HOM05D005338 ORTHO05D006550 1.2e-86 323.6 221 72.9
Thhalv10000318m.g Eutrema salsugineum HOM05D005338 ORTHO05D006550 1.2e-86 323.6 221 75.6
vmacro21598 Vaccinium macrocarpon HOM05D005338 ORTHO05D006550 1.6e-86 323.2 210 81.0
AL4G11870 Arabidopsis lyrata HOM05D005338 ORTHO05D006550 2.7e-86 322.4 221 75.1
Aqoxy1G02678 Aquilegia oxysepala HOM05D005338 ORTHO05D006550 4.6e-86 321.6 221 72.4
Potri.007G095300 Populus trichocarpa HOM05D005338 ORTHO05D006550 4.6e-86 321.6 221 77.8
CARHR113580 Cardamine hirsuta HOM05D005338 ORTHO05D006550 1.3e-85 320.1 221 72.4
Psat1g148520 Pisum sativum HOM05D005338 ORTHO05D006550 1.8e-85 319.7 226 72.1
ECA247G2066 Erigeron canadensis HOM05D005338 ORTHO05D006550 3.0e-85 318.9 223 73.5
Hund12454 Selenicereus undatus HOM05D005338 ORTHO05D006550 3.0e-85 318.9 210 77.6
BcaC02g08666 Brassica carinata HOM05D005338 ORTHO05D006550 6.7e-85 317.8 221 74.7
Carub.0004s0155 Capsella rubella HOM05D005338 ORTHO05D006550 8.7e-85 317.4 221 74.2
A04p16850 Brassica napus HOM05D005338 ORTHO05D006550 1.1e-84 317.0 221 74.7
BraA04t17318Z Brassica rapa HOM05D005338 ORTHO05D006550 1.1e-84 317.0 221 74.7
PSO017G6030 Papaver somniferum HOM05D005338 ORTHO05D006550 1.1e-84 317.0 221 71.9
BcaC02g08711 Brassica carinata HOM05D005338 ORTHO05D006550 1.5e-84 316.6 221 74.7
C04p51430 Brassica napus HOM05D005338 ORTHO05D006550 1.5e-84 316.6 221 74.7
HanXRQChr04g0104391 Helianthus annuus HOM05D005338 ORTHO05D006550 2.5e-84 315.8 224 71.9
Peaxi162Scf00479g00910 Petunia axillaris HOM05D005338 ORTHO05D006550 9.7e-84 313.9 209 76.6
BolC4t26735H Brassica oleracea HOM05D005338 ORTHO05D006550 1.3e-83 313.5 221 74.2
Medtr5g044730 Medicago truncatula HOM05D005338 ORTHO05D006550 4.8e-83 311.6 210 75.2
PSO170G4003 Papaver somniferum HOM05D005338 ORTHO05D006550 1.8e-82 309.7 221 71.0
CDE07G0352 Ceratophyllum demersum HOM05D005338 ORTHO05D006550 5.3e-82 308.1 199 79.4
Haze_25403 Corylus avellana HOM05D005338 ORTHO05D006550 5.3e-82 308.1 297 59.9
TPR.G29215 Trifolium pratense HOM05D005338 ORTHO05D006550 1.2e-81 307.0 210 74.3
Lsat_1_v5_gn_1_19481 Lactuca sativa HOM05D005338 ORTHO05D006550 7.7e-81 304.3 209 75.1
Os02g0193900 Oryza sativa ssp. japonica HOM05D005338 ORTHO05D006550 7.7e-81 304.3 204 72.5
Sabra07G0078500 Salix brachista HOM05D005338 ORTHO05D006550 7.7e-81 304.3 214 74.8
unitig_744.g23988 Utricularia gibba HOM05D005338 ORTHO05D006550 1.0e-80 303.9 205 77.1
Aa31LG7G14440 Aethionema arabicum HOM05D005338 ORTHO05D006550 1.3e-80 303.5 277 59.9
Zm00001eb236490 Zea mays HOM05D005338 ORTHO05D006550 1.7e-80 303.1 221 73.8
HPP92_021909 Vanilla planifolia HOM05D005338 ORTHO05D006550 2.2e-80 302.8 205 72.2
ATR0767G114 Amborella trichopoda HOM05D005338 ORTHO05D006550 2.9e-80 302.4 205 73.7
Sopen03g010490 Solanum pennellii HOM05D005338 ORTHO05D006550 1.4e-79 300.1 205 74.1
Sopen03g021660 Solanum pennellii HOM05D005338 ORTHO05D006550 2.5e-79 299.3 205 74.1
Sopen03g021630 Solanum pennellii HOM05D005338 ORTHO05D006550 1.6e-78 296.6 205 73.7
Sp4g01410 Schrenkiella parvula HOM05D005338 ORTHO05D006550 6.7e-77 291.2 221 68.8
Dinv36026 Davidia involucrata HOM05D005338 ORTHO05D006550 7.4e-76 287.7 218 70.2
CAN.G176.23 Capsicum annuum HOM05D005338 ORTHO05D006550 2.4e-74 282.7 188 76.1
SHI19279 Sapria himalayana HOM05D005338 ORTHO05D006550 7.7e-73 277.7 204 71.1
Rhsim06G0038600 Rhododendron simsii HOM05D005338 ORTHO05D006550 4.2e-71 271.9 185 75.7
Ca_02026_v3 Cicer arietinum L. HOM05D005338 ORTHO05D006550 2.1e-70 269.6 167 80.2
Lj4A782T79 Lonicera japonica HOM05D005338 ORTHO05D006550 7.4e-68 261.2 176 74.4
MELO3C010912.2 Cucumis melo HOM05D005338 ORTHO05D006550 1.1e-66 257.3 177 75.1
Mapoly0023s0045 Marchantia polymorpha HOM05D005338 ORTHO05D006550 1.4e-66 256.9 205 62.9
Pp3c14_750 Physcomitrium patens HOM05D005338 ORTHO05D006550 1.2e-65 253.8 209 58.9
SMO236G0045 Selaginella moellendorffii HOM05D005338 ORTHO05D006550 1.2e-65 253.8 205 61.0
SalBow1G1231 Salvia bowleyana HOM05D005338 ORTHO05D006550 1.3e-59 233.8 153 83.7
AagrBONN_evm.TU.Sc2ySwM_362.1720 Anthoceros agrestis HOM05D005338 ORTHO05D006550 3.8e-56 222.2 205 55.6
AUR62040070 Chenopodium quinoa HOM05D005338 ORTHO05D006550 4.2e-55 218.8 142 77.5
TAR628G0003 Trochodendron aralioides HOM05D005338 ORTHO05D006550 1.4e-53 213.8 145 77.2
Solyc03g046360.3 Solanum lycopersicum HOM05D005338 ORTHO05D006550 4.8e-51 205.3 205 57.6
RcHm_v2.0_Chr7g0238911 Rosa chinensis HOM05D005338 ORTHO05D006550 6.3e-51 204.9 179 64.8
Sc15g0006680 Simmondsia chinensis HOM05D005338 ORTHO05D006550 1.8e-50 203.4 145 73.1
Hma1.2p1_0023F.1_g015170 Hydrangea macrophylla HOM05D005338 ORTHO05D006550 1.7e-48 196.8 135 76.3
RcHm_v2.0_Chr5g0034471 Rosa chinensis HOM05D005338 ORTHO05D006550 8.5e-48 194.5 125 80.0
RcHm_v2.0_Chr7g0238871 Rosa chinensis HOM05D005338 ORTHO05D006550 8.8e-45 184.5 113 78.8
Sopen00g011030 Solanum pennellii HOM05D005338 ORTHO05D006550 1.2e-41 174.1 205 50.2
SMO236G0041 Selaginella moellendorffii HOM05D005338 ORTHO05D006550 3.5e-41 172.6 165 54.5
Sopen00g003620 Solanum pennellii HOM05D005338 ORTHO05D006550 3.6e-38 162.5 162 56.2
Sopen03g021680 Solanum pennellii HOM05D005338 ORTHO05D006550 3.1e-29 132.9 205 43.9
RcHm_v2.0_Chr7g0238881 Rosa chinensis HOM05D005338 ORTHO05D006550 1.9e-26 123.6 91 74.7
TPR.G5804 Trifolium pratense HOM05D005338 ORTHO05D006550 1.5e-23 114.0 84 72.6
Atru.chr1.3597 Acer truncatum HOM05D005338 ORTHO05D006550 3.4e-20 102.8 81 77.8
Atru.chr12.488 Acer truncatum HOM05D005338 ORTHO05D006550 1.5e-15 87.4 45 91.1
BcaC04g23293 Brassica carinata HOM05D005338 ORTHO05D006550 1.5e-15 87.4 56 71.4
TAR628G1182 Trochodendron aralioides HOM05D005338 ORTHO05D006550 1.5e-15 87.4 46 84.8
MD08G1183200 Malus domestica HOM05D005338 ORTHO05D006550 6.2e-14 82.0 91 57.1
SEGI_27973 Sequoiadendron giganteum HOM05D005338 ORTHO05D006550 2.0e-12 77.0 56 64.3
BraA09t41155Z Brassica rapa HOM05D005338 ORTHO05D006550 3.0e-08 63.2 66 56.1
C08p40830 Brassica napus HOM05D005338 ORTHO05D006550 2.5e-07 60.1 34 85.3
BolC8t51648H Brassica oleracea HOM05D005338 ORTHO05D006550 7.3e-07 58.5 34 85.3


User provided reference genes

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