Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD15G1297700 Malus domestica HOM05D000001 ORTHO05D002182 2.4e-40 168.3 81 100.0
MD13G1249600 Malus domestica HOM05D001882 ORTHO05D002314 3.9e-14 81.3 43 86.0
MD10G1043800 Malus domestica HOM05D001882 ORTHO05D002182 5.0e-14 80.9 43 86.0
MD04G1109800 Malus domestica HOM05D001882 ORTHO05D002182 3.3e-13 78.2 43 83.7
MD17G1274500 Malus domestica HOM05D001882 ORTHO05D002182 7.3e-13 77.0 43 83.7
MD05G1277200 Malus domestica HOM05D000001 ORTHO05D002182 6.8e-11 70.5 41 82.9
MD10G1256100 Malus domestica HOM05D000001 ORTHO05D002182 8.9e-11 70.1 41 80.5
Cfa000874 Carpinus fangiana HOM05D000001 ORTHO05D002182 2.6e-10 68.6 41 75.6
FAN25G3090 Fragaria x ananassa HOM05D000001 ORTHO05D002182 4.4e-10 67.8 41 78.0
Prupe.4G087500 Prunus persica HOM05D000001 ORTHO05D002182 4.4e-10 67.8 41 78.0
Peaxi162Scf00045g00234 Petunia axillaris HOM05D000001 ORTHO05D002182 5.8e-10 67.4 45 64.4
Manes.17G074900 Manihot esculenta HOM05D000001 ORTHO05D002182 7.5e-10 67.0 41 75.6
ClCG01G025010 Citrullus lanatus HOM05D000001 ORTHO05D000003 9.9e-10 66.6 41 73.2
Potri.001G358100 Populus trichocarpa HOM05D000001 ORTHO05D002182 9.9e-10 66.6 41 75.6
Duzib132G0111 Durio zibethinus HOM05D000001 ORTHO05D002182 1.3e-09 66.2 41 73.2
FvH4_3g09510 Fragaria vesca HOM05D000001 ORTHO05D002182 1.3e-09 66.2 41 75.6
FAN11G1988 Fragaria x ananassa HOM05D000001 ORTHO05D002182 1.3e-09 66.2 41 75.6
MBI02_g26597_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D002182 1.3e-09 66.2 42 71.4
Ciclev10014038m.g Citrus clementina HOM05D000001 ORTHO05D002182 1.7e-09 65.9 41 75.6
RcHm_v2.0_Chr5g0015091 Rosa chinensis HOM05D000001 ORTHO05D002182 1.7e-09 65.9 41 75.6
TAR627G0492 Trochodendron aralioides HOM05D000001 ORTHO05D002182 1.7e-09 65.9 41 73.2
Aqoxy4G00106 Aquilegia oxysepala HOM05D000001 ORTHO05D002182 2.2e-09 65.5 41 70.7
CANSAT35G0468 Cannabis sativa HOM05D000001 ORTHO05D002182 2.2e-09 65.5 41 75.6
FAN16G2122 Fragaria x ananassa HOM05D000001 ORTHO05D002182 2.2e-09 65.5 41 75.6
Lsat_1_v5_gn_7_32301 Lactuca sativa HOM05D000001 ORTHO05D002182 2.2e-09 65.5 41 73.2
QL05p054340 Quercus lobata HOM05D000001 ORTHO05D002182 2.2e-09 65.5 41 73.2
Haze_05716 Corylus avellana HOM05D000001 ORTHO05D002182 2.9e-09 65.1 41 70.7
ECA236G0529 Erigeron canadensis HOM05D000001 ORTHO05D002182 2.9e-09 65.1 41 75.6
FAN21G2407 Fragaria x ananassa HOM05D000001 ORTHO05D002182 2.9e-09 65.1 41 75.6
CsaV3_6G052190 Cucumis sativus L. HOM05D000001 ORTHO05D002182 3.7e-09 64.7 41 70.7
Gohir.A01G128300 Gossypium hirsutum HOM05D000001 ORTHO05D002182 4.9e-09 64.3 41 70.7
Gohir.D01G116400 Gossypium hirsutum HOM05D000001 ORTHO05D002182 4.9e-09 64.3 41 70.7
Gorai.002G141900 Gossypium raimondii HOM05D000001 ORTHO05D002182 4.9e-09 64.3 41 70.7
Sc17g0004770 Simmondsia chinensis HOM05D000001 ORTHO05D002182 4.9e-09 64.3 41 68.3
Atru.chr10.1032 Acer truncatum HOM05D000001 ORTHO05D002182 6.4e-09 63.9 41 70.7
HanXRQChr04g0112101 Helianthus annuus HOM05D000001 ORTHO05D002182 6.4e-09 63.9 41 70.7
Nn4g26648 Nelumbo nucifera HOM05D000001 ORTHO05D002182 6.4e-09 63.9 41 73.2
CSS0005660 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D002182 8.3e-09 63.5 41 70.7
CSS0040764 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D002182 8.3e-09 63.5 41 70.7
TWI53G1691 Tripterygium wilfordii HOM05D000001 ORTHO05D002182 8.3e-09 63.5 41 68.3
MELO3C007093.2 Cucumis melo HOM05D000001 ORTHO05D002182 1.1e-08 63.2 41 70.7
GSVIVG01021576001 Vitis vinifera HOM05D000001 ORTHO05D002182 1.1e-08 63.2 41 70.7
Dinv21493 Davidia involucrata HOM05D000001 ORTHO05D002182 1.4e-08 62.8 41 70.7
Sed0027382 Sechium edule HOM05D000001 ORTHO05D002182 1.4e-08 62.8 41 68.3
CiPaw.09G117800 Carya illinoinensis HOM05D000001 ORTHO05D002182 1.9e-08 62.4 41 70.7
AUR62002658 Chenopodium quinoa HOM05D000001 ORTHO05D002182 2.4e-08 62.0 41 68.3
Hund21554 Selenicereus undatus HOM05D000001 ORTHO05D002182 2.4e-08 62.0 41 70.7
Cc09_g08610 Coffea canephora HOM05D000001 ORTHO05D002182 3.2e-08 61.6 41 68.3
PGR083G2164 Punica granatum HOM05D000001 ORTHO05D002182 3.2e-08 61.6 41 63.4
Lj1C1167T9 Lonicera japonica HOM05D000001 ORTHO05D002182 4.1e-08 61.2 41 70.7
Lj6g0021423 Lotus japonicus HOM05D000001 ORTHO05D002182 4.1e-08 61.2 41 70.7
Rhsim13G0118700 Rhododendron simsii HOM05D000001 ORTHO05D002182 4.1e-08 61.2 41 65.9
THA.LOC104812328 Tarenaya hassleriana HOM05D000001 ORTHO05D002182 4.1e-08 61.2 41 65.9
Actinidia23089 Actinidia chinensis HOM05D000001 ORTHO05D002182 5.4e-08 60.8 41 68.3
ATR1098G120 Amborella trichopoda HOM05D000001 ORTHO05D002182 5.4e-08 60.8 41 65.9
Thecc.02G010000 Theobroma cacao HOM05D000001 ORTHO05D002182 5.4e-08 60.8 41 65.9
Oeu058467.1 Olea europaea HOM05D000001 ORTHO05D002182 7.1e-08 60.5 41 68.3
Os05g0512000 Oryza sativa ssp. japonica HOM05D000001 ORTHO05D002182 9.2e-08 60.1 41 65.9
unitig_37.g12084 Utricularia gibba HOM05D000001 ORTHO05D002182 9.2e-08 60.1 43 60.5
Oeu041164.2 Olea europaea HOM05D000001 ORTHO05D002182 1.2e-07 59.7 41 65.9
AL7G33060 Arabidopsis lyrata HOM05D000001 ORTHO05D002182 1.6e-07 59.3 41 65.9
Thhalv10024364m.g Eutrema salsugineum HOM05D000001 ORTHO05D002182 1.6e-07 59.3 41 65.9
Glyma.15G092000 Glycine max HOM05D000001 ORTHO05D002182 1.6e-07 59.3 40 70.0
MD12G1143800 Malus domestica HOM05D000008 ORTHO05D246844 1.6e-07 59.3 41 73.2
AT4G21070 Arabidopsis thaliana HOM05D000001 ORTHO05D002182 2.1e-07 58.9 41 65.9
CAN.G36.29 Capsicum annuum HOM05D000001 ORTHO05D002182 2.1e-07 58.9 41 63.4
Glyma.13G220400 Glycine max HOM05D000001 ORTHO05D002182 2.1e-07 58.9 40 70.0
PGSC0003DMG400005381 Solanum tuberosum HOM05D000001 ORTHO05D002182 2.1e-07 58.9 41 63.4
TPR.G26230 Trifolium pratense HOM05D000001 ORTHO05D002182 2.1e-07 58.9 41 63.4
DCAR_027877 Daucus carota HOM05D000001 ORTHO05D002182 2.7e-07 58.5 41 68.3
Medtr2g018880 Medicago truncatula HOM05D000001 ORTHO05D002182 2.7e-07 58.5 41 68.3
Ah.14g086270 Amaranthus hybridus HOM05D000001 ORTHO05D002182 3.5e-07 58.2 41 63.4
EL10Ac8g19611 Beta vulgaris HOM05D000001 ORTHO05D002182 3.5e-07 58.2 41 65.9
Migut.M01869 Erythranthe guttata HOM05D000001 ORTHO05D002182 3.5e-07 58.2 41 63.4
BolC1t01450H Brassica oleracea HOM05D000001 ORTHO05D002182 4.6e-07 57.8 41 65.9
BraA01t01189Z Brassica rapa HOM05D000001 ORTHO05D000003 4.6e-07 57.8 41 65.9
Carub.0007s2036 Capsella rubella HOM05D000001 ORTHO05D002182 4.6e-07 57.8 41 63.4
CARHR227660 Cardamine hirsuta HOM05D000001 ORTHO05D002182 4.6e-07 57.8 41 63.4
Psat1g191360 Pisum sativum HOM05D000001 ORTHO05D002182 4.6e-07 57.8 40 67.5
Sp7g19160 Schrenkiella parvula HOM05D000001 ORTHO05D002182 4.6e-07 57.8 41 63.4
Hma1.2p1_0689F.1_g203780 Hydrangea macrophylla HOM05D000001 ORTHO05D002182 6.0e-07 57.4 41 65.9
Sopen08g008190 Solanum pennellii HOM05D000001 ORTHO05D002182 6.0e-07 57.4 41 61.0
BcaNung03846 Brassica carinata HOM05D000001 ORTHO05D002182 7.8e-07 57.0 41 63.4
Phvul.006G167200 Phaseolus vulgaris HOM05D000001 ORTHO05D002182 7.8e-07 57.0 40 67.5
SEGI_28504 Sequoiadendron giganteum HOM05D000001 ORTHO05D002182 7.8e-07 57.0 41 61.0
BcaC01g00718 Brassica carinata HOM05D000001 ORTHO05D002182 1.0e-06 56.6 41 61.0
BcaC09g51263 Brassica carinata HOM05D000001 ORTHO05D002182 1.0e-06 56.6 42 59.5
A01p12430 Brassica napus HOM05D000001 ORTHO05D002182 1.0e-06 56.6 41 63.4
A08p15300 Brassica napus HOM05D000001 ORTHO05D002182 1.0e-06 56.6 41 61.0
C03p83540 Brassica napus HOM05D000001 ORTHO05D002182 1.0e-06 56.6 41 61.0
BolC3t20635H Brassica oleracea HOM05D000001 ORTHO05D002182 1.0e-06 56.6 41 61.0
BraA08t33507Z Brassica rapa HOM05D000001 ORTHO05D002182 1.0e-06 56.6 41 61.0
C01p15010 Brassica napus HOM05D000001 ORTHO05D000003 1.3e-06 56.2 41 63.4
PSO541G3782 Papaver somniferum HOM05D000001 ORTHO05D002182 1.3e-06 56.2 41 61.0
PSO675G2687 Papaver somniferum HOM05D000001 ORTHO05D002182 1.3e-06 56.2 41 61.0
Zm00001eb292490 Zea mays HOM05D000001 ORTHO05D002182 1.3e-06 56.2 41 58.5
vmacro03421 Vaccinium macrocarpon HOM05D000001 ORTHO05D002182 1.7e-06 55.8 41 63.4
arahy.Tifrunner.gnm1.ann1.KIB2TD Arachis hypogaea HOM05D000001 ORTHO05D006446 2.3e-06 55.5 38 63.2
arahy.Tifrunner.gnm1.ann1.CR4GUX Arachis hypogaea HOM05D000001 ORTHO05D002182 3.0e-06 55.1 38 65.8
Lalb_Chr15g0086691 Lupinus albus HOM05D000001 ORTHO05D002182 3.9e-06 54.7 40 60.0
arahy.Tifrunner.gnm1.ann1.PL2FJ9 Arachis hypogaea HOM05D000001 ORTHO05D002182 5.1e-06 54.3 38 63.2
Lalb_Chr18g0055211 Lupinus albus HOM05D000001 ORTHO05D002182 5.1e-06 54.3 40 60.0


User provided reference genes

Program Settings