Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD15G1151100 Malus domestica HOM05D003333 ORTHO05D003836 1.4e-54 216.5 147 100.0
Prupe.7G264700 Prunus persica HOM05D003333 ORTHO05D003836 1.0e-44 183.7 146 87.7
MD02G1006200 Malus domestica HOM05D003333 ORTHO05D003836 6.1e-42 174.5 146 86.3
FAN26G2607 Fragaria x ananassa HOM05D003333 ORTHO05D003836 4.5e-37 158.3 146 78.8
TWI34G1096 Tripterygium wilfordii HOM05D003333 ORTHO05D003836 4.5e-37 158.3 146 77.4
CiPaw.15G166600 Carya illinoinensis HOM05D003333 ORTHO05D003836 1.7e-36 156.4 146 78.1
Ciclev10008985m.g Citrus clementina HOM05D003333 ORTHO05D003836 2.9e-36 155.6 146 74.7
CANSAT11G2442 Cannabis sativa HOM05D003333 ORTHO05D003836 3.8e-36 155.2 146 76.7
RcHm_v2.0_Chr2g0085481 Rosa chinensis HOM05D003333 ORTHO05D003836 8.5e-36 154.1 146 69.2
Atru.chr6.2482 Acer truncatum HOM05D003333 ORTHO05D003836 1.1e-35 153.7 146 51.4
FAN23G0545 Fragaria x ananassa HOM05D003333 ORTHO05D003836 1.1e-35 153.7 146 77.4
HanXRQChr09g0244551 Helianthus annuus HOM05D003333 ORTHO05D003836 1.1e-35 153.7 146 71.9
FvH4_1g00760 Fragaria vesca HOM05D003333 ORTHO05D003836 3.2e-35 152.1 146 77.4
FAN28G1118 Fragaria x ananassa HOM05D003333 ORTHO05D003836 3.2e-35 152.1 146 77.4
Lj9A718T41 Lonicera japonica HOM05D003333 ORTHO05D003836 7.2e-35 151.0 146 75.3
Duzib168G0432 Durio zibethinus HOM05D003333 ORTHO05D003836 9.4e-35 150.6 146 73.3
Gorai.009G056000 Gossypium raimondii HOM05D003333 ORTHO05D003836 1.2e-34 150.2 146 75.3
Gohir.A05G052600 Gossypium hirsutum HOM05D003333 ORTHO05D003836 1.6e-34 149.8 146 75.3
Oeu021312.1 Olea europaea HOM05D003333 ORTHO05D003836 1.6e-34 149.8 146 74.7
DCAR_019403 Daucus carota HOM05D003333 ORTHO05D003836 2.7e-34 149.1 146 76.0
Cfa020808 Carpinus fangiana HOM05D003333 ORTHO05D003836 3.6e-34 148.7 145 73.8
Dinv43259 Davidia involucrata HOM05D003333 ORTHO05D003836 3.6e-34 148.7 146 75.3
Gohir.D05G054300 Gossypium hirsutum HOM05D003333 ORTHO05D003836 3.6e-34 148.7 146 74.7
Eucgr.C02501 Eucalyptus grandis HOM05D003333 ORTHO05D003836 8.0e-34 147.5 146 74.7
Eucgr.L01446 Eucalyptus grandis HOM05D003333 ORTHO05D003836 8.0e-34 147.5 146 74.7
Eucgr.L03182 Eucalyptus grandis HOM05D003333 ORTHO05D003836 8.0e-34 147.5 146 74.7
Medtr4g130620 Medicago truncatula HOM05D003333 ORTHO05D003836 8.0e-34 147.5 146 76.0
Hma1.2p1_0222F.1_g093690 Hydrangea macrophylla HOM05D003333 ORTHO05D003836 1.4e-33 146.7 146 76.7
Phvul.003G155100 Phaseolus vulgaris HOM05D003333 ORTHO05D003836 1.8e-33 146.4 146 74.7
CSS0000248 Camellia sinensis var. sinensis HOM05D003333 ORTHO05D003836 2.3e-33 146.0 146 76.7
QL02p093741 Quercus lobata HOM05D003333 ORTHO05D003836 3.0e-33 145.6 146 76.0
Sabra18G0089700 Salix brachista HOM05D003333 ORTHO05D003836 4.0e-33 145.2 146 74.7
VMungo1215G1683 Vigna mungo HOM05D003333 ORTHO05D003836 4.0e-33 145.2 146 74.7
Glyma.02G205200 Glycine max HOM05D003333 ORTHO05D003836 5.2e-33 144.8 146 74.7
Aqoxy7G03374 Aquilegia oxysepala HOM05D003333 ORTHO05D003836 8.8e-33 144.1 146 74.0
Dinv41364 Davidia involucrata HOM05D003333 ORTHO05D003836 8.8e-33 144.1 146 75.3
TAR636G2329 Trochodendron aralioides HOM05D003333 ORTHO05D003836 8.8e-33 144.1 145 75.9
Manes.14G145200 Manihot esculenta HOM05D003333 ORTHO05D003836 1.5e-32 143.3 146 49.3
Thecc.09G028300 Theobroma cacao HOM05D003333 ORTHO05D003836 1.5e-32 143.3 146 73.3
MSTRG.6153 Avicennia marina HOM05D003333 ORTHO05D003836 2.6e-32 142.5 146 74.7
Rhsim01G0028000 Rhododendron simsii HOM05D003333 ORTHO05D003836 2.6e-32 142.5 146 76.0
Cc00_g27050 Coffea canephora HOM05D003333 ORTHO05D003836 4.4e-32 141.7 146 70.5
Lj4g0011279 Lotus japonicus HOM05D003333 ORTHO05D003836 4.4e-32 141.7 146 74.7
Nn8g39960 Nelumbo nucifera HOM05D003333 ORTHO05D003836 4.4e-32 141.7 146 74.0
arahy.Tifrunner.gnm1.ann1.GH9EZK Arachis hypogaea HOM05D003333 ORTHO05D003836 9.7e-32 140.6 146 74.7
ECA240G0541 Erigeron canadensis HOM05D003333 ORTHO05D003836 9.7e-32 140.6 146 70.5
Sed0000092 Sechium edule HOM05D003333 ORTHO05D003836 9.7e-32 140.6 146 74.7
Ca_21138_v3 Cicer arietinum L. HOM05D003333 ORTHO05D003836 2.2e-31 139.4 146 75.3
Ca_21143_v3 Cicer arietinum L. HOM05D003333 ORTHO05D003836 2.2e-31 139.4 146 75.3
vmacro16794 Vaccinium macrocarpon HOM05D003333 ORTHO05D003836 3.7e-31 138.7 146 74.7
Lalb_Chr13g0300781 Lupinus albus HOM05D003333 ORTHO05D003836 6.3e-31 137.9 146 73.3
Lsat_1_v5_gn_7_50080 Lactuca sativa HOM05D003333 ORTHO05D003836 1.8e-30 136.3 146 74.7
Migut.J01369 Erythranthe guttata HOM05D003333 ORTHO05D003836 2.4e-30 136.0 146 65.8
MBI15_g18227_MAGBIO Magnolia biondii HOM05D003333 ORTHO05D003836 4.1e-30 135.2 145 69.7
PSO541G3342 Papaver somniferum HOM05D003333 ORTHO05D003836 4.1e-30 135.2 146 74.0
Potri.018G104900 Populus trichocarpa HOM05D003333 ORTHO05D003836 4.1e-30 135.2 146 72.6
ClCG02G014400 Citrullus lanatus HOM05D003333 ORTHO05D003836 7.0e-30 134.4 146 74.0
Psat0s3930g0160 Pisum sativum HOM05D003333 ORTHO05D003836 7.0e-30 134.4 146 71.2
SalBow1G6609 Salvia bowleyana HOM05D003333 ORTHO05D003836 7.0e-30 134.4 146 72.6
CARHR271670 Cardamine hirsuta HOM05D003333 ORTHO05D003836 4.5e-29 131.7 145 70.3
Sp6g19570 Schrenkiella parvula HOM05D003333 ORTHO05D003836 1.3e-28 130.2 146 45.9
SGA_v2.0_scaffold265G46094 Striga asiatica HOM05D003333 ORTHO05D003836 1.7e-28 129.8 146 70.5
Oeu021319.1 Olea europaea HOM05D003333 ORTHO05D003836 5.0e-28 128.3 141 72.3
Sc08g0009270 Simmondsia chinensis HOM05D003333 ORTHO05D003836 8.5e-28 127.5 146 70.5
AT5G57900 Arabidopsis thaliana HOM05D003333 ORTHO05D003836 3.2e-27 125.6 145 46.2
Aa31LG3G13720 Aethionema arabicum HOM05D003333 ORTHO05D003836 4.2e-27 125.2 145 68.3
BolC9t57828H Brassica oleracea HOM05D003333 ORTHO05D003836 5.5e-27 124.8 147 53.7
THA.LOC104803544 Tarenaya hassleriana HOM05D003333 ORTHO05D003836 7.2e-27 124.4 146 69.2
Cpa.g.sc46.170 Carica papaya HOM05D003333 ORTHO05D003836 9.4e-27 124.0 150 47.3
PGR142G2767 Punica granatum HOM05D003333 ORTHO05D003836 9.4e-27 124.0 146 67.1
CsaV3_2G007600 Cucumis sativus L. HOM05D003333 ORTHO05D003836 1.6e-26 123.2 146 71.9
Carub.0008s1843 Capsella rubella HOM05D003333 ORTHO05D003836 3.6e-26 122.1 145 62.8
MELO3C004126.2 Cucumis melo HOM05D003333 ORTHO05D003836 3.6e-26 122.1 146 72.6
CDE04G3371 Ceratophyllum demersum HOM05D003333 ORTHO05D003836 8.0e-26 120.9 146 67.1
A10p15260 Brassica napus HOM05D003333 ORTHO05D003836 1.0e-25 120.6 147 44.2
BraA10t43607Z Brassica rapa HOM05D003333 ORTHO05D003836 1.0e-25 120.6 147 44.2
FAN13G1111 Fragaria x ananassa HOM05D003333 ORTHO05D003836 1.4e-25 120.2 147 59.2
Hund08925 Selenicereus undatus HOM05D003333 ORTHO05D003836 1.4e-25 120.2 145 70.3
Ah.14g084580 Amaranthus hybridus HOM05D003333 ORTHO05D003836 2.3e-25 119.4 145 67.6
Ah.14g084600 Amaranthus hybridus HOM05D003333 ORTHO05D003836 2.3e-25 119.4 145 66.2
ATR0019G010 Amborella trichopoda HOM05D003333 ORTHO05D003836 2.3e-25 119.4 145 40.7
C09p49770 Brassica napus HOM05D003333 ORTHO05D003836 6.8e-25 117.9 147 53.7
AL8G33960 Arabidopsis lyrata HOM05D003333 ORTHO05D003836 8.8e-25 117.5 145 43.4
FvH4_5g27040 Fragaria vesca HOM05D003333 ORTHO05D003836 1.2e-24 117.1 147 64.6
arahy.Tifrunner.gnm1.ann1.LQ9XAK Arachis hypogaea HOM05D003333 ORTHO05D003836 1.5e-24 116.7 128 71.1
HPP92_013422 Vanilla planifolia HOM05D003333 ORTHO05D003836 2.0e-24 116.3 145 63.4
Zm00001eb177870 Zea mays HOM05D003333 ORTHO05D003836 2.8e-23 112.5 146 37.7
TPR.G24850 Trifolium pratense HOM05D003333 ORTHO05D003836 6.3e-23 111.3 114 76.3
Haze_19185 Corylus avellana HOM05D003333 ORTHO05D003836 1.4e-22 110.2 113 75.2
AUR62025341 Chenopodium quinoa HOM05D003333 ORTHO05D003836 1.8e-22 109.8 145 67.6
AL7G21500 Arabidopsis lyrata HOM05D003333 ORTHO05D003836 1.2e-21 107.1 145 66.9
Thhalv10014217m.g Eutrema salsugineum HOM05D003333 ORTHO05D003836 1.2e-21 107.1 145 62.1
Dinv42841 Davidia involucrata HOM05D003333 ORTHO05D003836 3.5e-21 105.5 115 73.0
AT4G30640 Arabidopsis thaliana HOM05D003333 ORTHO05D003836 7.7e-21 104.4 145 66.2
PGSC0003DMG400011146 Solanum tuberosum HOM05D003333 ORTHO05D003836 2.3e-20 102.8 145 64.8
Aa31LG2G19780 Aethionema arabicum HOM05D003333 ORTHO05D003836 3.8e-20 102.1 145 58.6
Nitab4.5_0002320g0010 Nicotiana tabacum HOM05D003333 ORTHO05D003836 3.8e-20 102.1 141 65.2
Nitab4.5_0002724g0090 Nicotiana tabacum HOM05D003333 ORTHO05D003836 3.8e-20 102.1 145 64.1
THA.LOC104811832 Tarenaya hassleriana HOM05D003333 ORTHO05D003836 8.6e-20 100.9 145 58.6
AUR62028342 Chenopodium quinoa HOM05D003333 ORTHO05D003836 1.9e-19 99.8 145 64.8
Solyc07g005750.3 Solanum lycopersicum HOM05D003333 ORTHO05D003836 1.9e-19 99.8 145 61.4
Thhalv10014209m.g Eutrema salsugineum HOM05D003333 ORTHO05D003836 3.3e-19 99.0 148 58.8
Peaxi162Scf00267g00510 Petunia axillaris HOM05D003333 ORTHO05D003836 5.5e-19 98.2 145 62.8
Sopen07g001850 Solanum pennellii HOM05D003333 ORTHO05D003836 5.5e-19 98.2 145 63.4
EL10Ac8g18939 Beta vulgaris HOM05D003333 ORTHO05D003836 9.5e-19 97.4 113 70.8
BcaNung02970 Brassica carinata HOM05D003333 ORTHO05D003836 9.5e-19 97.4 144 61.8
BcaNung04558 Brassica carinata HOM05D003333 ORTHO05D003836 9.5e-19 97.4 148 48.6
Actinidia38315 Actinidia chinensis HOM05D003333 ORTHO05D003836 1.6e-18 96.7 112 75.0
FAN08G3193 Fragaria x ananassa HOM05D003333 ORTHO05D003836 1.6e-18 96.7 151 60.9
BraA01t00704Z Brassica rapa HOM05D003333 ORTHO05D003836 4.7e-18 95.1 140 63.6
FAN16G1551 Fragaria x ananassa HOM05D003333 ORTHO05D003836 6.1e-18 94.7 151 60.3
SEGI_29061 Sequoiadendron giganteum HOM05D003333 ORTHO05D003836 6.1e-18 94.7 145 55.2
CARHR238520 Cardamine hirsuta HOM05D003333 ORTHO05D003836 8.0e-18 94.4 145 38.6
FAN04G1412 Fragaria x ananassa HOM05D003333 ORTHO05D003836 8.0e-18 94.4 147 42.2
BolC3t21167H Brassica oleracea HOM05D003333 ORTHO05D003836 1.4e-17 93.6 145 61.4
A08p19150 Brassica napus HOM05D003333 ORTHO05D003836 1.8e-17 93.2 145 61.4
BraA08t33876Z Brassica rapa HOM05D003333 ORTHO05D003836 1.8e-17 93.2 145 61.4
FAN26G3012 Fragaria x ananassa HOM05D003333 ORTHO05D003836 3.0e-17 92.4 151 59.6
Sp7g28550 Schrenkiella parvula HOM05D003333 ORTHO05D003836 3.0e-17 92.4 145 61.4
BcaNung00576 Brassica carinata HOM05D003333 ORTHO05D003836 5.2e-17 91.7 148 48.6
C07p58110 Brassica napus HOM05D003333 ORTHO05D003836 5.2e-17 91.7 148 48.6
AUR62028344 Chenopodium quinoa HOM05D003333 ORTHO05D003836 5.2e-17 91.7 113 70.8
FAN21G3730 Fragaria x ananassa HOM05D003333 ORTHO05D003836 5.2e-17 91.7 147 61.9
A01p07610 Brassica napus HOM05D003333 ORTHO05D003836 1.5e-16 90.1 140 62.1
C01p08250 Brassica napus HOM05D003333 ORTHO05D003836 1.5e-16 90.1 140 62.1
BolC1t00813H Brassica oleracea HOM05D003333 ORTHO05D003836 1.5e-16 90.1 140 62.1
Oeu018383.3 Olea europaea HOM05D003333 ORTHO05D003836 3.4e-16 89.0 189 32.8
Aa31LG2G19800 Aethionema arabicum HOM05D003333 ORTHO05D003836 4.4e-16 88.6 145 57.9
BcaC09g51858 Brassica carinata HOM05D003333 ORTHO05D003836 4.4e-16 88.6 140 61.4
C03p88610 Brassica napus HOM05D003333 ORTHO05D003836 7.5e-16 87.8 140 60.7
Carub.0007s0992 Capsella rubella HOM05D003333 ORTHO05D003836 7.5e-16 87.8 145 59.3
BcaB03g12653 Brassica carinata HOM05D003333 ORTHO05D003836 2.2e-15 86.3 145 36.6
AUR62025340 Chenopodium quinoa HOM05D003333 ORTHO05D003836 2.2e-15 86.3 145 61.4
CAN.G160.47 Capsicum annuum HOM05D003333 ORTHO05D003836 4.9e-15 85.1 146 59.6
A03p60210 Brassica napus HOM05D003333 ORTHO05D003836 3.1e-14 82.4 148 49.3
Aa31LG2G19850 Aethionema arabicum HOM05D003333 ORTHO05D003836 5.4e-14 81.6 145 44.1
Sp7g28530 Schrenkiella parvula HOM05D003333 ORTHO05D003836 5.4e-14 81.6 152 37.5
Aa31LG2G19860 Aethionema arabicum HOM05D003333 ORTHO05D003836 9.2e-14 80.9 146 57.5
Aa31LG2G19790 Aethionema arabicum HOM05D003333 ORTHO05D003836 1.2e-13 80.5 145 58.6
FAN18G2716 Fragaria x ananassa HOM05D003333 ORTHO05D003836 3.5e-13 79.0 143 39.2
Sp7g28520 Schrenkiella parvula HOM05D003333 ORTHO05D003836 4.5e-13 78.6 146 56.2
AagrBONN_evm.TU.Sc2ySwM_368.1612 Anthoceros agrestis HOM05D003333 ORTHO05D003836 5.9e-13 78.2 147 49.7
BcaNung04560 Brassica carinata HOM05D003333 ORTHO05D003836 1.3e-12 77.0 145 58.6
Aa31LG2G19840 Aethionema arabicum HOM05D003333 ORTHO05D003836 1.7e-12 76.6 141 53.2
SEGI_02706 Sequoiadendron giganteum HOM05D003333 ORTHO05D003836 2.3e-12 76.3 113 55.8
arahy.Tifrunner.gnm1.ann1.CR443U Arachis hypogaea HOM05D003333 ORTHO05D003836 1.9e-11 73.2 100 76.0
BcaNung00573 Brassica carinata HOM05D003333 ORTHO05D003836 1.9e-11 73.2 146 54.8
C07p58070 Brassica napus HOM05D003333 ORTHO05D003836 1.9e-11 73.2 146 56.8
C07p58120 Brassica napus HOM05D003333 ORTHO05D003836 1.9e-11 73.2 155 32.9
BolC7t46266H Brassica oleracea HOM05D003333 ORTHO05D003836 1.9e-11 73.2 146 56.8
BolC7t46271H Brassica oleracea HOM05D003333 ORTHO05D003836 1.9e-11 73.2 155 32.9
BcaC09g51854 Brassica carinata HOM05D003333 ORTHO05D003836 3.3e-11 72.4 147 50.3
BolC1t00817H Brassica oleracea HOM05D003333 ORTHO05D003836 3.3e-11 72.4 147 50.3
Carub.0005s1014 Capsella rubella HOM05D003333 ORTHO05D003836 3.3e-11 72.4 143 32.9
A03p60160 Brassica napus HOM05D003333 ORTHO05D003836 4.3e-11 72.0 146 57.5
BcaB05g24930 Brassica carinata HOM05D003333 ORTHO05D003836 7.3e-11 71.2 113 35.4
BolC7t46269H Brassica oleracea HOM05D003333 ORTHO05D003836 6.1e-10 68.2 139 33.8
BcaNung00575 Brassica carinata HOM05D003333 ORTHO05D003836 1.8e-09 66.6 139 59.0
A03p60200 Brassica napus HOM05D003333 ORTHO05D003836 3.1e-09 65.9 139 57.6
Carub.0005s1013 Capsella rubella HOM05D003333 ORTHO05D003836 5.2e-09 65.1 143 32.9
C01p08260 Brassica napus HOM05D003333 ORTHO05D003836 8.9e-09 64.3 51 60.8
C07p58100 Brassica napus HOM05D003333 ORTHO05D003836 8.9e-09 64.3 152 55.3
AL5G22560 Arabidopsis lyrata HOM05D003333 ORTHO05D003836 2.0e-08 63.2 148 51.4
Medtr4g130630 Medicago truncatula HOM05D003333 ORTHO05D003836 2.0e-08 63.2 145 56.6
BcaNung02972 Brassica carinata HOM05D003333 ORTHO05D003836 5.8e-08 61.6 51 58.8
BraA07t27986Z Brassica rapa HOM05D003333 ORTHO05D003836 1.3e-07 60.5 51 56.9
A07p01860 Brassica napus HOM05D003333 ORTHO05D003836 1.7e-07 60.1 51 56.9
BcaNung04559 Brassica carinata HOM05D003333 ORTHO05D003836 2.2e-07 59.7 141 55.3
Dinv10065 Davidia involucrata HOM05D003333 ORTHO05D003836 6.4e-07 58.2 37 67.6
SMO118G0396 Selaginella moellendorffii HOM05D003333 ORTHO05D003836 1.4e-06 57.0 49 46.9
BcaC06g36466 Brassica carinata HOM05D003333 ORTHO05D003836 2.4e-06 56.2 51 54.9
CARHR109380 Cardamine hirsuta HOM05D003333 ORTHO05D003836 4.1e-06 55.5 48 56.2
Mapoly0003s0037 Marchantia polymorpha HOM05D003333 ORTHO05D003836 4.1e-06 55.5 145 50.3


User provided reference genes

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