Gene: AT5G57900

General Information

Structural Information

Species Arabidopsis thaliana
Gene Identifier AT5G57900
Transcript Identifier AT5G57900.1
Gene Type Coding gene
Location Chr5 : 23449916-23450915 : negative

Gene Family Information

Homologous GF
Orthologous GF

ID HOM05D003333
#Genes/#Species 205/93
Phylogenetic origin

ID ORTHO05D003836
#Genes/#Species 203/93
Phylogenetic origin

Gene Duplication Information

Block Duplication Block duplicate

Labels

Identifiers

tid AT5G57900.1
symbol SKIP1
uniprot Q9FDX1

Descriptions

Description SKP1 interacting partner 1

Computational description SKP1 interacting partner 1 (SKIP1); CONTAINS InterPro DOMAIN/s: F-box domain, Skp2-like (InterPro:IPR022364); BEST Arabidopsis thaliana protein match is: RNI-like superfamily protein (TAIR:AT4G30640.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

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Functional Annotation

Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0016567	IEA	Gene Ontology	protein ubiquitination
GO:0031146	IBA	Gene Ontology	SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	1

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0005515	IPI	Gene Ontology	protein binding	2
GO:0005515	IEA	InterPro	protein binding

Cellular Component

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0005634	IEA	GOA Database	nucleus
GO:0005634	ISM	Gene Ontology	nucleus
GO:0019005	IDA IBA	Gene Ontology	SCF ubiquitin ligase complex	1 2

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR032675	Leucine-rich repeat domain superfamily
IPR006553	Leucine-rich repeat, cysteine-containing subtype
IPR036047	F-box-like domain superfamily
IPR001611	Leucine-rich repeat

Mapman id	Description
19.2.2.8.1.4.3	Protein homeostasis.ubiquitin-proteasome system.ubiquitin-fold protein conjugation.Cullin-based ubiquitylation complexes.SKP1-CUL1-FBX (SCF) E3 ubiquitin ligase complexes.F-BOX substrate adaptor activities.substrate adaptor (FBX)