Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD15G1002100 Malus domestica HOM05D006705 ORTHO05D008179 6.1e-148 528.9 700 100.0
MD12G1003200 Malus domestica HOM05D006705 ORTHO05D008179 2.7e-111 407.1 339 84.4
Prupe.1G354600 Prunus persica HOM05D006705 ORTHO05D008179 1.4e-107 394.8 324 85.2
RcHm_v2.0_Chr6g0304261 Rosa chinensis HOM05D006705 ORTHO05D008179 5.9e-103 379.4 322 69.6
FAN27G0286 Fragaria x ananassa HOM05D006705 ORTHO05D008179 9.5e-101 372.1 323 64.1
FvH4_2g37460 Fragaria vesca HOM05D006705 ORTHO05D008179 3.6e-100 370.2 323 64.1
FAN15G2229 Fragaria x ananassa HOM05D006705 ORTHO05D008179 2.0e-98 364.4 319 63.9
ClCG08G009460 Citrullus lanatus HOM05D006705 ORTHO05D008179 4.0e-91 340.1 250 72.0
QL02p014030 Quercus lobata HOM05D006705 ORTHO05D008179 8.9e-91 339.0 240 73.8
CANSAT25G1831 Cannabis sativa HOM05D006705 ORTHO05D008179 1.5e-90 338.2 240 74.2
Cfa014075 Carpinus fangiana HOM05D006705 ORTHO05D008179 4.4e-90 336.7 241 74.7
Haze_22772 Corylus avellana HOM05D006705 ORTHO05D008179 5.8e-90 336.3 243 74.1
Cpa.g.sc26.199 Carica papaya HOM05D006705 ORTHO05D008179 2.2e-89 334.3 241 73.4
MELO3C026541.2 Cucumis melo HOM05D006705 ORTHO05D008179 3.7e-89 333.6 254 73.6
CsaV3_6G031600 Cucumis sativus L. HOM05D006705 ORTHO05D008179 8.3e-89 332.4 254 69.3
Manes.05G134500 Manihot esculenta HOM05D006705 ORTHO05D008179 1.1e-88 332.0 238 73.5
COL.COLO4_06661 Corchorus olitorius HOM05D006705 ORTHO05D008179 4.1e-88 330.1 241 78.0
Gorai.002G117100 Gossypium raimondii HOM05D006705 ORTHO05D008179 2.7e-87 327.4 242 73.6
Dinv05535 Davidia involucrata HOM05D006705 ORTHO05D008179 3.5e-87 327.0 240 72.9
Glyma.04G018000 Glycine max HOM05D006705 ORTHO05D008179 4.6e-87 326.6 239 72.8
Sed0011006 Sechium edule HOM05D006705 ORTHO05D008179 4.6e-87 326.6 238 71.4
Thecc.08G058800 Theobroma cacao HOM05D006705 ORTHO05D008179 6.0e-87 326.2 242 72.7
Gohir.A01G105700 Gossypium hirsutum HOM05D006705 ORTHO05D008179 1.0e-86 325.5 242 75.2
Psat5g159080 Pisum sativum HOM05D006705 ORTHO05D008179 1.0e-86 325.5 240 73.8
Glyma.06G018300 Glycine max HOM05D006705 ORTHO05D008179 1.3e-86 325.1 238 73.1
Gohir.D01G092000 Gossypium hirsutum HOM05D006705 ORTHO05D008179 1.7e-86 324.7 242 73.1
CiPaw.08G072900 Carya illinoinensis HOM05D006705 ORTHO05D008179 2.5e-85 320.9 234 73.9
Ca_15434_v3 Cicer arietinum L. HOM05D006705 ORTHO05D008179 2.5e-85 320.9 240 72.1
Ca_15459_v3 Cicer arietinum L. HOM05D006705 ORTHO05D008179 2.5e-85 320.9 240 72.1
CSS0004504 Camellia sinensis var. sinensis HOM05D006705 ORTHO05D008179 4.3e-85 320.1 240 75.0
CSS0019684 Camellia sinensis var. sinensis HOM05D006705 ORTHO05D008179 4.3e-85 320.1 240 75.0
TAR376G0550 Trochodendron aralioides HOM05D006705 ORTHO05D008179 3.6e-84 317.0 243 71.6
Aa31LG9G12430 Aethionema arabicum HOM05D006705 ORTHO05D008179 4.7e-84 316.6 243 67.9
GSVIVG01013362001 Vitis vinifera HOM05D006705 ORTHO05D008179 1.8e-83 314.7 233 70.8
arahy.Tifrunner.gnm1.ann1.A2XG10 Arachis hypogaea HOM05D006705 ORTHO05D008179 4.0e-83 313.5 229 72.5
arahy.Tifrunner.gnm1.ann1.1DQJ64 Arachis hypogaea HOM05D006705 ORTHO05D008179 5.2e-83 313.2 229 72.9
Nn5g30939 Nelumbo nucifera HOM05D006705 ORTHO05D008179 5.2e-83 313.2 241 71.4
Potri.005G250200 Populus trichocarpa HOM05D006705 ORTHO05D008179 6.8e-83 312.8 243 73.3
Ciclev10000451m.g Citrus clementina HOM05D006705 ORTHO05D008179 1.2e-82 312.0 240 67.9
Thhalv10027665m.g Eutrema salsugineum HOM05D006705 ORTHO05D008179 1.2e-82 312.0 234 68.8
Atru.chr13.134 Acer truncatum HOM05D006705 ORTHO05D008179 1.5e-82 311.6 240 67.1
Lj1g0004605 Lotus japonicus HOM05D006705 ORTHO05D008179 2.6e-82 310.8 232 74.1
Lalb_Chr11g0061641 Lupinus albus HOM05D006705 ORTHO05D008179 3.4e-82 310.5 238 68.9
THA.LOC104825423 Tarenaya hassleriana HOM05D006705 ORTHO05D008179 3.4e-82 310.5 241 66.4
Sp7g08260 Schrenkiella parvula HOM05D006705 ORTHO05D008179 4.4e-82 310.1 232 69.8
CARHR284920 Cardamine hirsuta HOM05D006705 ORTHO05D008179 5.8e-82 309.7 240 68.3
VMungo1309G2580 Vigna mungo HOM05D006705 ORTHO05D008179 5.8e-82 309.7 662 75.8
Phvul.009G010700 Phaseolus vulgaris HOM05D006705 ORTHO05D008179 7.5e-82 309.3 236 69.1
AL8G19290 Arabidopsis lyrata HOM05D006705 ORTHO05D008179 1.3e-81 308.5 235 68.1
CAN.G985.2 Capsicum annuum HOM05D006705 ORTHO05D008179 1.7e-81 308.1 238 66.8
Hma1.2p1_0507F.1_g168450 Hydrangea macrophylla HOM05D006705 ORTHO05D008179 2.2e-81 307.8 241 71.4
Actinidia15490 Actinidia chinensis HOM05D006705 ORTHO05D008179 2.9e-81 307.4 238 68.1
BcaC06g31759 Brassica carinata HOM05D006705 ORTHO05D008179 4.9e-81 306.6 234 67.5
Medtr3g115270 Medicago truncatula HOM05D006705 ORTHO05D008179 1.1e-80 305.4 233 69.5
AT5G42310 Arabidopsis thaliana HOM05D006705 ORTHO05D008179 1.4e-80 305.1 232 68.1
Sabra05G0193800 Salix brachista HOM05D006705 ORTHO05D008179 1.4e-80 305.1 245 70.6
A03p65890 Brassica napus HOM05D006705 ORTHO05D008179 2.4e-80 304.3 235 66.8
BraA03t15643Z Brassica rapa HOM05D006705 ORTHO05D008179 2.4e-80 304.3 235 66.8
BcaC02g10761 Brassica carinata HOM05D006705 ORTHO05D008179 3.2e-80 303.9 234 67.1
C04p25410 Brassica napus HOM05D006705 ORTHO05D008179 3.2e-80 303.9 234 67.1
BolC4t24049H Brassica oleracea HOM05D006705 ORTHO05D008179 3.2e-80 303.9 234 67.1
Carub.0008s0687 Capsella rubella HOM05D006705 ORTHO05D008179 2.1e-79 301.2 234 67.9
Oeu007482.1 Olea europaea HOM05D006705 ORTHO05D008179 4.6e-79 300.1 240 65.8
MSTRG.1107 Avicennia marina HOM05D006705 ORTHO05D008179 6.0e-79 299.7 239 63.6
Aqoxy5G01043 Aquilegia oxysepala HOM05D006705 ORTHO05D008179 1.7e-78 298.1 247 66.8
Nitab4.5_0025577g0010 Nicotiana tabacum HOM05D006705 ORTHO05D008179 1.7e-78 298.1 238 66.0
Nitab4.5_0000337g0230 Nicotiana tabacum HOM05D006705 ORTHO05D008179 3.0e-78 297.4 238 65.5
PGSC0003DMG400011663 Solanum tuberosum HOM05D006705 ORTHO05D008179 1.5e-77 295.0 238 66.4
Lsat_1_v5_gn_9_45140 Lactuca sativa HOM05D006705 ORTHO05D008179 2.5e-77 294.3 238 63.9
Migut.C00960 Erythranthe guttata HOM05D006705 ORTHO05D008179 7.3e-77 292.7 239 63.6
Rhsim06G0007500 Rhododendron simsii HOM05D006705 ORTHO05D008179 7.3e-77 292.7 238 64.3
TPR.G38137 Trifolium pratense HOM05D006705 ORTHO05D008179 7.3e-77 292.7 231 70.6
PSO170G2138 Papaver somniferum HOM05D006705 ORTHO05D008179 4.7e-76 290.0 241 61.8
DCAR_013913 Daucus carota HOM05D006705 ORTHO05D008179 6.2e-76 289.7 238 68.5
vmacro21812 Vaccinium macrocarpon HOM05D006705 ORTHO05D008179 1.4e-75 288.5 239 63.6
Potri.002G010900 Populus trichocarpa HOM05D006705 ORTHO05D008179 1.8e-75 288.1 233 66.1
Solyc08g045850.3 Solanum lycopersicum HOM05D006705 ORTHO05D008179 1.8e-75 288.1 237 65.4
Sopen08g014170 Solanum pennellii HOM05D006705 ORTHO05D008179 1.8e-75 288.1 237 65.4
PSO210G3824 Papaver somniferum HOM05D006705 ORTHO05D008179 3.1e-75 287.3 241 61.0
Hund05113 Selenicereus undatus HOM05D006705 ORTHO05D008179 3.1e-75 287.3 239 63.2
HanXRQChr05g0146791 Helianthus annuus HOM05D006705 ORTHO05D008179 8.9e-75 285.8 238 63.9
Sabra02G0008200 Salix brachista HOM05D006705 ORTHO05D008179 8.9e-75 285.8 240 63.8
SalBow7G0522 Salvia bowleyana HOM05D006705 ORTHO05D008179 8.9e-75 285.8 239 62.8
SGA_v2.0_scaffold108G30860 Striga asiatica HOM05D006705 ORTHO05D008179 1.5e-74 285.0 235 64.3
Peaxi162Scf00400g00113 Petunia axillaris HOM05D006705 ORTHO05D008179 3.4e-74 283.9 238 63.0
AUR62043173 Chenopodium quinoa HOM05D006705 ORTHO05D008179 9.9e-74 282.3 241 61.4
Cc10_g00680 Coffea canephora HOM05D006705 ORTHO05D008179 2.2e-73 281.2 238 63.4
AUR62036875 Chenopodium quinoa HOM05D006705 ORTHO05D008179 6.4e-73 279.6 242 61.2
ECA232G0132 Erigeron canadensis HOM05D006705 ORTHO05D008179 1.1e-72 278.9 238 63.9
EL10Ac1g01967 Beta vulgaris HOM05D006705 ORTHO05D008179 7.1e-72 276.2 238 61.3
PGR031G2749 Punica granatum HOM05D006705 ORTHO05D008179 7.1e-72 276.2 238 64.3
CDE02G1751 Ceratophyllum demersum HOM05D006705 ORTHO05D008179 1.2e-71 275.4 211 66.4
Lsat_1_v5_gn_8_26180 Lactuca sativa HOM05D006705 ORTHO05D008179 7.3e-69 266.2 239 58.6
Ah.11g041180 Amaranthus hybridus HOM05D006705 ORTHO05D008179 4.7e-68 263.5 237 59.5
HanXRQChr12g0367581 Helianthus annuus HOM05D006705 ORTHO05D008179 4.4e-66 256.9 240 56.7
Sc15g0004450 Simmondsia chinensis HOM05D006705 ORTHO05D008179 1.2e-63 248.8 238 57.6
CDE04G2934 Ceratophyllum demersum HOM05D006705 ORTHO05D008179 1.7e-62 245.0 237 57.0
ECA233G5787 Erigeron canadensis HOM05D006705 ORTHO05D008179 9.6e-61 239.2 239 52.7
Lj4A11G70 Lonicera japonica HOM05D006705 ORTHO05D008179 3.6e-60 237.3 161 74.5
FAN20G2687 Fragaria x ananassa HOM05D000148 ORTHO05D008179 1.7e-57 228.4 158 73.4
Eucgr.F03553 Eucalyptus grandis HOM05D006705 ORTHO05D008179 5.6e-53 213.4 162 72.2
MBI08_g41522_MAGBIO Magnolia biondii HOM05D006705 ORTHO05D008179 8.4e-41 172.9 239 45.2
HPP92_000875 Vanilla planifolia HOM05D006705 ORTHO05D008179 1.4e-40 172.2 239 43.1
ATR0661G389 Amborella trichopoda HOM05D006705 ORTHO05D008179 2.9e-33 147.9 208 39.4
Eucgr.F03554 Eucalyptus grandis HOM05D006705 ORTHO05D008179 7.9e-31 139.8 79 87.3
SEGI_04333 Sequoiadendron giganteum HOM05D006705 ORTHO05D000002 1.1e-29 136.0 185 44.3
Nitab4.5_0002710g0130 Nicotiana tabacum HOM05D006705 ORTHO05D008179 2.8e-28 131.3 78 80.8
Mapoly0048s0090 Marchantia polymorpha HOM05D006705 ORTHO05D008179 1.6e-23 115.5 206 35.4
Zm00001eb323580 Zea mays HOM05D006705 ORTHO05D008179 7.9e-23 113.2 247 34.0
SMO180G0012 Selaginella moellendorffii HOM05D006705 ORTHO05D008179 1.3e-20 105.9 174 33.3
AagrBONN_evm.TU.Sc2ySwM_362.1316 Anthoceros agrestis HOM05D006705 ORTHO05D008179 1.7e-20 105.5 184 32.1
Os07g0548300 Oryza sativa ssp. japonica HOM05D006705 ORTHO05D008179 1.7e-20 105.5 248 34.7
Gorai.010G041000 Gossypium raimondii HOM05D006705 ORTHO05D008179 2.2e-20 105.1 62 82.3
Gohir.D06G036701 Gossypium hirsutum HOM05D006705 ORTHO05D008179 8.2e-20 103.2 60 83.3
FvH4_5g30181 Fragaria vesca HOM05D006705 ORTHO05D008179 5.3e-19 100.5 80 66.2
CDE02G4098 Ceratophyllum demersum HOM05D006705 ORTHO05D008179 1.2e-18 99.4 58 82.8
Gohir.D05G336850 Gossypium hirsutum HOM05D006705 ORTHO05D008179 1.5e-18 99.0 70 72.9
CDE02G0006 Ceratophyllum demersum HOM05D007456 ORTHO05D009411 2.6e-13 81.6 68 54.4
BcaNung05253 Brassica carinata HOM05D006705 ORTHO05D008179 1.1e-11 76.3 65 56.9
Lj1C1032G4 Lonicera japonica HOM05D007456 ORTHO05D009411 2.0e-10 72.0 61 52.5
PGR142G2334 Punica granatum HOM05D007456 ORTHO05D009411 2.0e-10 72.0 53 64.2
Lsat_1_v5_gn_4_134121 Lactuca sativa HOM05D007456 ORTHO05D009411 4.5e-10 70.9 76 46.1
HPP92_008353 Vanilla planifolia HOM05D006705 ORTHO05D008179 1.1e-08 66.2 53 52.8
Cc11_g03880 Coffea canephora HOM05D007456 ORTHO05D009411 1.9e-08 65.5 73 47.9
Gohir.D06G157800 Gossypium hirsutum HOM05D000485 ORTHO05D000341 2.1e-07 62.0 37 78.4
arahy.Tifrunner.gnm1.ann1.B1EWUA Arachis hypogaea HOM05D000001 ORTHO05D000003 4.0e-06 57.8 158 25.9
AUR62037373 Chenopodium quinoa HOM05D002479 ORTHO05D002675 4.0e-06 57.8 104 31.7
AUR62038945 Chenopodium quinoa HOM05D002479 ORTHO05D002675 4.0e-06 57.8 104 31.7
Pp3c11_21930 Physcomitrium patens HOM05D006705 ORTHO05D008179 5.2e-06 57.4 204 23.5
Actinidia01524 Actinidia chinensis HOM05D000001 ORTHO05D000003 8.8e-06 56.6 157 26.8


User provided reference genes

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